Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004624

Physical Location & Seq

Genomic Coordinates Reverse (-)

16039535 .. 16042795

Gene Structure 3261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1162300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTCAGTTGATAATTTGTTCGGAAAGCTTCCTGATCATCTCGTAATAGAAATTTTCATCCGAGTTCCTGTCTCAGAGTGGGCACAAATCTCCTGCGTTAAAAAACAGTGGGCCAATTTGTTTCACGGAGAACTCTTGTGGCAAGCTGCTCTTGCTATGACATTTCCTTTGGCTAGCCAAGCTAAAAGGTGGCCGGGACCTATCCCTCGAGGATTGAGCAAGAGGAGATTTGAAGCTTTATATGTCAGTAAACATATATTTTCTCTGGATGGCGAGATTGATGAGATCGTGGGCCATAGTTTTATGTTTCTAAAAGAGCAGCTTGAGCGTTCAACCATGCCACCCTCTTCTAGTATACTGCACGGAACCCTCATAGATCAGTTTATTGCTTGTGGGAAATCGAGGGTCATGGCTCATGATCTTGCTTCCCAGATCTGGCTGGCTGTTCTCGACAATTTAGAGGAAAATGAGAAAACTTTTCAATTACTTAAACGTCTTGCACAAGAGGCTGATGTTTTTCTCCCGTACCCATACTCAAGATCGATCAAAGTCCAATGGAGGGTGTTTGAAAAGCTCTTCACAGATTTTCGCGACTGCTTCAATCATGTAGATTATTATGATGTGCTGGGTTGTGCAAAGAACAATTTTCAGCCATTACCATCCACTTGGTTAGGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

227

Amino Acids

26.14

Weight (kDa)

6.65

Isoelectric Point (pI)

48.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004624)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20270 AT3G20270 AT3G20270 AT3G20270 AT3G20270 AT3G20270
fragaria_vesca	FvH4_6g36931 FvH4_6g36931 FvH4_6g36931
malus_domestica	MD09G1165400.v1.1 MD17G1162300.v1.1
prunus_persica	Prupe.3G023100_v2.0.a1
pyrus_communis	pycom09g08280
rosa_chinensis	RchiOBHm_Chr2g0149371 RchiOBHm_Chr2g0149381
rosa_laevigata	RLG00000020396 RLG00000020402
rosa_multiflora	Rmu_co8329327.1_g000001 Rmu_sc0000873.1_g000018 Rmu_sc0006867.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098150 Rroxscaffold_2G00098160
rosa_rugosa	Rorug02G0411900
rosa_samantha	Rh2AG471600 Rh2AG471700 Rh2BG483900 Rh2CG457600 Rh2CG457700 Rh2DG492900 Rh2DG493000
rosa_wichuraiana	Rw2G038380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	207
AccI	GTMKAC	1 cut(s)	355
AccII	CGCG	1 cut(s)	591
AcoI	YGGCCR	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	51
AfaI	GTAC	1 cut(s)	527
AfiI	CCNNNNNNNGG	2 cut(s)	435, 559
AgsI	TTSAA	5 cut(s)	233, 333, 482, 569, 601
AluBI	AGCT	6 cut(s)	28, 146, 182, 236, 322, 574
AluI	AGCT	6 cut(s)	28, 146, 182, 236, 322, 574
Alw26I	GTCTC	1 cut(s)	76
Ama87I	CYCGRG	1 cut(s)	207
AoxI	GGCC	3 cut(s)	111, 191, 292
ApeKI	GCWGC	2 cut(s)	146, 319
ApoI	RAATTY	1 cut(s)	51
ArsI	GACNNNNNNTTYG	2 cut(s)	151, 183
AspS9I	GGNCC	3 cut(s)	111, 197, 292
AsuC2I	CCSGG	1 cut(s)	195
AsuNHI	GCTAGC	1 cut(s)	173
AvaI	CYCGRG	1 cut(s)	207
AvaII	GGWCC	1 cut(s)	197
BaeGI	GKGCMC	1 cut(s)	85
BbvI	GCAGC	2 cut(s)	133, 331
BccI	CCATC	2 cut(s)	263, 667
BclI	TGATCA	1 cut(s)	34
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	2 cut(s)	174, 351
BglII	AGATCT	1 cut(s)	432
BisI	GCNGC	2 cut(s)	147, 320
BlsI	GCNGC	2 cut(s)	148, 321
Bme1390I	CCNGG	1 cut(s)	195
Bme18I	GGWCC	1 cut(s)	197
BmeT110I	CYCGRG	1 cut(s)	207
BmgT120I	GGNCC	3 cut(s)	111, 197, 292
BmiI	GGNNCC	2 cut(s)	198, 367
BmrFI	CCNGG	1 cut(s)	195
BmtI	GCTAGC	1 cut(s)	177
BpuEI	CTTGAG	2 cut(s)	344, 520
BpuMI	CCSGG	1 cut(s)	195
Bsa29I	ATCGAT	1 cut(s)	542
Bsc4I	CCNNNNNNNGG	2 cut(s)	435, 559
BseCI	ATCGAT	1 cut(s)	542
BseGI	GGATG	3 cut(s)	57, 274, 659
BseLI	CCNNNNNNNGG	2 cut(s)	435, 559
BseMII	CTCAG	1 cut(s)	87
BseRI	GAGGAG	1 cut(s)	238
BseSI	GKGCMC	1 cut(s)	85
BseXI	GCAGC	2 cut(s)	133, 331
BseYI	CCCAGC	1 cut(s)	625
BsgI	GTGCAG	1 cut(s)	344
Bsh1236I	CGCG	1 cut(s)	591
BshFI	GGCC	3 cut(s)	113, 193, 294
BshVI	ATCGAT	1 cut(s)	542
BsiHKCI	CYCGRG	1 cut(s)	207
BsiSI	CCGG	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	2 cut(s)	435, 559
BsmAI	GTCTC	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	210
BsnI	GGCC	3 cut(s)	113, 193, 294
BsoBI	CYCGRG	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	7 cut(s)	34, 285, 376, 418, 432, 539, 543
Bsp68I	TCGCGA	1 cut(s)	591
BspANI	GGCC	3 cut(s)	113, 193, 294
BspCNI	CTCAG	1 cut(s)	86
BspDI	ATCGAT	1 cut(s)	542
BspFNI	CGCG	1 cut(s)	591
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	2 cut(s)	198, 367
BspOI	GCTAGC	1 cut(s)	177
BspQI	GCTCTTC	1 cut(s)	581
BssMI	GATC	7 cut(s)	34, 285, 376, 418, 432, 539, 543
BssNAI	GTATAC	1 cut(s)	356
Bst1107I	GTATAC	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	108
Bst6I	CTCTTC	2 cut(s)	352, 581
BstC8I	GCNNGC	3 cut(s)	144, 175, 441
BstDEI	CTNAG	1 cut(s)	73
BstF5I	GGATG	3 cut(s)	57, 274, 659
BstFNI	CGCG	1 cut(s)	591
BstKTI	GATC	7 cut(s)	37, 288, 379, 421, 435, 542, 546
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	7 cut(s)	34, 285, 376, 418, 432, 539, 543
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 179, 325, 506
BstSCI	CCNGG	1 cut(s)	193
BstSLI	GKGCMC	1 cut(s)	85
BstUI	CGCG	1 cut(s)	591
BstV1I	GCAGC	2 cut(s)	133, 331
BstX2I	RGATCY	1 cut(s)	432
BstXI	CCANNNNNNTGG	1 cut(s)	666
BstYI	RGATCY	1 cut(s)	432
BstZ17I	GTATAC	1 cut(s)	356
Bsu15I	ATCGAT	1 cut(s)	542
BsuRI	GGCC	3 cut(s)	113, 193, 294
BsuTUI	ATCGAT	1 cut(s)	542
BtsCI	GGATG	3 cut(s)	57, 274, 659
BtsIMutI	CAGTG	1 cut(s)	113
BtuMI	TCGCGA	1 cut(s)	591
Cac8I	GCNNGC	3 cut(s)	144, 175, 441
CciI	TCATGA	1 cut(s)	415
Cfr13I	GGNCC	3 cut(s)	111, 197, 292
ClaI	ATCGAT	1 cut(s)	542
Csp6I	GTAC	1 cut(s)	526
CviAII	CATG	4 cut(s)	337, 409, 416, 605
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	7 cut(s)	36, 287, 378, 420, 434, 541, 545
DpnII	GATC	7 cut(s)	34, 285, 376, 418, 432, 539, 543
EaeI	YGGCCR	1 cut(s)	191
Eam1104I	CTCTTC	2 cut(s)	352, 581
EarI	CTCTTC	2 cut(s)	352, 581
Eco47I	GGWCC	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	197
FaeI	CATG	4 cut(s)	340, 412, 419, 608
FalI	AAGNNNNNCTT	4 cut(s)	135, 167, 306, 338
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	4 cut(s)	336, 408, 415, 604
FbaI	TGATCA	1 cut(s)	34
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	147, 320
FokI	GGATG	3 cut(s)	44, 281, 646
Fsp4HI	GCNGC	2 cut(s)	147, 320
FspBI	CTAG	2 cut(s)	174, 351
GluI	GCNGC	2 cut(s)	147, 320
GsaI	CCCAGC	1 cut(s)	629
HaeIII	GGCC	3 cut(s)	113, 193, 294
HapII	CCGG	1 cut(s)	194
Hin1II	CATG	4 cut(s)	340, 412, 419, 608
HindIII	AAGCTT	2 cut(s)	26, 234
HpaII	CCGG	1 cut(s)	194
Hpy166II	GTNNAC	2 cut(s)	251, 356
Hpy188I	TCNGA	3 cut(s)	23, 62, 76
Hpy188III	TCNNGA	6 cut(s)	32, 266, 416, 449, 537, 590
Hpy8I	GTNNAC	2 cut(s)	251, 356
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	3 cut(s)	361, 500, 635
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 179, 325, 506
HpyF3I	CTNAG	1 cut(s)	73
HpySE526I	ACGT	1 cut(s)	493
Hsp92II	CATG	4 cut(s)	340, 412, 419, 608
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	7 cut(s)	34, 285, 376, 418, 432, 539, 543
LguI	GCTCTTC	1 cut(s)	581
LpnPI	CCDG	9 cut(s)	45, 81, 106, 207, 251, 421, 425, 443, 611
Lsp1109I	GCAGC	2 cut(s)	133, 331
MaeI	CTAG	2 cut(s)	174, 351
MaeII	ACGT	1 cut(s)	493
MaeIII	GTNAC	1 cut(s)	674
MalI	GATC	7 cut(s)	36, 287, 378, 420, 434, 541, 545
MboI	GATC	7 cut(s)	34, 285, 376, 418, 432, 539, 543
MboII	GAAGA	2 cut(s)	339, 568
MflI	RGATCY	1 cut(s)	432
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	6 cut(s)	13, 51, 115, 454, 482, 643
MnlI	CCTC	9 cut(s)	203, 216, 216, 355, 380, 396, 454, 499, 552
MseI	TTAA	2 cut(s)	99, 489
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	195
MvnI	CGCG	1 cut(s)	591
MwoI	GCNNNNNNNGC	4 cut(s)	152, 179, 325, 506
NciI	CCSGG	1 cut(s)	195
NdeII	GATC	7 cut(s)	34, 285, 376, 418, 432, 539, 543
NheI	GCTAGC	1 cut(s)	173
NlaIII	CATG	4 cut(s)	340, 412, 419, 608
NlaIV	GGNNCC	2 cut(s)	198, 367
NruI	TCGCGA	1 cut(s)	591
PaeR7I	CTCGAG	1 cut(s)	207
PagI	TCATGA	1 cut(s)	415
PciSI	GCTCTTC	1 cut(s)	581
PkrI	GCNGC	2 cut(s)	148, 321
PpuMI	RGGWCCY	1 cut(s)	197
Psp5II	RGGWCCY	1 cut(s)	197
PspFI	CCCAGC	1 cut(s)	625
PspN4I	GGNNCC	2 cut(s)	198, 367
PspPI	GGNCC	3 cut(s)	111, 197, 292
PspPPI	RGGWCCY	1 cut(s)	197
PspXI	VCTCGAGB	1 cut(s)	207
PsuI	RGATCY	1 cut(s)	432
RruI	TCGCGA	1 cut(s)	591
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
SapI	GCTCTTC	1 cut(s)	581
SaqAI	TTAA	2 cut(s)	99, 489
SatI	GCNGC	2 cut(s)	147, 320
Sau3AI	GATC	7 cut(s)	34, 285, 376, 418, 432, 539, 543
Sau96I	GGNCC	3 cut(s)	111, 197, 292
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	85
Sfr274I	CTCGAG	1 cut(s)	207
SinI	GGWCC	1 cut(s)	197
SlaI	CTCGAG	1 cut(s)	207
SmlI	CTYRAG	3 cut(s)	207, 323, 535
SmoI	CTYRAG	3 cut(s)	207, 323, 535
Sse9I	AATT	6 cut(s)	13, 51, 115, 454, 482, 643
SspMI	CTAG	2 cut(s)	174, 351
StyD4I	CCNGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	108
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	4 cut(s)	208, 401, 450, 542
TasI	AATT	6 cut(s)	13, 51, 115, 454, 482, 643
Tru1I	TTAA	2 cut(s)	99, 489
Tru9I	TTAA	2 cut(s)	99, 489
TscAI	CASTG	1 cut(s)	113
TseI	GCWGC	2 cut(s)	146, 319
TspDTI	ATGAA	1 cut(s)	46
TspGWI	ACGGA	2 cut(s)	141, 378
TspRI	CASTG	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	197
XapI	RAATTY	1 cut(s)	51
XhoI	CTCGAG	1 cut(s)	207
XmiI	GTMKAC	1 cut(s)	355
XspI	CTAG	2 cut(s)	174, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.