Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005194

Physical Location & Seq

Genomic Coordinates Reverse (-)

30590573 .. 30591001

Gene Structure 429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g38640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCTGCAGATTTCCCAGAGACTAATACCTTGCAGTGTGCTCTTGGTGTCAATGAGTTCGAAGATTTTGAAGTCACAGAAGTTGATGGAACCATTCTGTGGGACTTGCTTGAAGAGTTGGAGAATCAAGAGAAGAAGAGTGACAAGAGTGAGCTCATTGATCATGAACCTAATAATATGATGACCAATGCCGAGGAGGTTTCGATGAAGAACGAGAGCTCCATCCCGGACTCAAACTCAAAATGGGTAACGATGGAAGATATGATGGTGGAGACTGATCCGTTACGTGAGATAGAGGGTTGGTTCACAGATGACATGGTGGGAATGATAGACTTTGGTTATACTGTGGGAGATTACTCACAATTGCACAATGGAGTTGGAGCCTCCAGCAATGAAGTTACTTATAATTGCTTGTGGGAAGAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

16.15

Weight (kDa)

4.05

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005194)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38640 FvH4_6g38650
prunus_persica	Prupe.3G177400_v2.0.a1 Prupe.3G177500_v2.0.a1
pyrus_communis	pycom09g06830 pycom17g12910
rosa_chinensis	RchiOBHm_Chr2g0152101
rosa_laevigata	RLG00000020608 RLG00000020609
rosa_multiflora	Rmu_sc0000760.1_g000006 Rmu_sc0003043.1_g000028
rosa_roxburghii	Rroxscaffold_2G00095920 Rroxscaffold_2G00095930
rosa_rugosa	Rorug02G0431100 Rorug02G0431100
rosa_samantha	Rh2AG491500 Rh2AG491600 Rh2AG491900 Rh2BG504100 Rh2BG504300 Rh2BG504400 Rh2CG478000 Rh2CG478200 Rh2CG478400 Rh2DG515200 Rh2DG515400 Rh2DG515500 Rh2DG515700
rosa_wichuraiana	Rw2G040420 Rw2G040430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	405
AccB7I	CCANNNNNTGG	1 cut(s)	99
AclWI	GGATC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	99
AgsI	TTSAA	2 cut(s)	71, 113
AloI	GAACNNNNNNTCC	2 cut(s)	203, 235
AluBI	AGCT	3 cut(s)	154, 219, 426
AluI	AGCT	3 cut(s)	154, 219, 426
Alw21I	GWGCWC	3 cut(s)	43, 156, 221
Alw26I	GTCTC	2 cut(s)	14, 266
AlwI	GGATC	1 cut(s)	272
ApeKI	GCWGC	1 cut(s)	5
AsuC2I	CCSGG	1 cut(s)	227
AsuII	TTCGAA	1 cut(s)	60
BanII	GRGCYC	2 cut(s)	156, 221
Bbv12I	GWGCWC	3 cut(s)	43, 156, 221
BccI	CCATC	4 cut(s)	80, 230, 247, 259
BclI	TGATCA	1 cut(s)	160
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	2 cut(s)	14, 266
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	227
BmiI	GGNNCC	2 cut(s)	91, 382
BmrFI	CCNGG	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	370
Bpu14I	TTCGAA	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	227
BsaAI	YACGTR	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse3DI	GCAATG	1 cut(s)	397
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMI	GCAATG	1 cut(s)	397
BseRI	GAGGAG	1 cut(s)	209
BsiHKAI	GWGCWC	3 cut(s)	43, 156, 221
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmAI	GTCTC	2 cut(s)	14, 266
BsmFI	GGGAC	1 cut(s)	116
Bsp119I	TTCGAA	1 cut(s)	60
Bsp1286I	GDGCHC	3 cut(s)	43, 156, 221
Bsp143I	GATC	2 cut(s)	160, 277
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	2 cut(s)	91, 382
BspMAI	CTGCAG	1 cut(s)	10
BspPI	GGATC	1 cut(s)	272
BspT104I	TTCGAA	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	397
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	2 cut(s)	160, 277
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	3 cut(s)	108, 131, 414
BstBAI	YACGTR	1 cut(s)	287
BstBI	TTCGAA	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	2 cut(s)	163, 280
BstMAI	GTCTC	2 cut(s)	14, 266
BstMBI	GATC	2 cut(s)	160, 277
BstSCI	CCNGG	1 cut(s)	225
BstSFI	CTRYAG	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	222
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	41
CciI	TCATGA	1 cut(s)	163
CviAII	CATG	2 cut(s)	164, 316
CviJI	RGCY	5 cut(s)	5, 154, 219, 383, 426
CviKI_1	RGCY	5 cut(s)	5, 154, 219, 383, 426
DpnI	GATC	2 cut(s)	162, 279
DpnII	GATC	2 cut(s)	160, 277
Eam1104I	CTCTTC	3 cut(s)	108, 131, 414
EarI	CTCTTC	3 cut(s)	108, 131, 414
Ecl136II	GAGCTC	2 cut(s)	154, 219
Eco24I	GRGCYC	2 cut(s)	156, 221
Eco53kI	GAGCTC	2 cut(s)	154, 219
EcoICRI	GAGCTC	2 cut(s)	154, 219
EcoT38I	GRGCYC	2 cut(s)	156, 221
FaeI	CATG	2 cut(s)	167, 319
FaiI	YATR	6 cut(s)	165, 179, 263, 317, 342, 405
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	2 cut(s)	163, 315
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	209
FriOI	GRGCYC	2 cut(s)	156, 221
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	370
HapII	CCGG	1 cut(s)	227
Hin1II	CATG	2 cut(s)	167, 319
HinfI	GANTC	2 cut(s)	124, 230
HpaII	CCGG	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188III	TCNNGA	2 cut(s)	128, 164
Hpy8I	GTNNAC	1 cut(s)	306
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	3 cut(s)	8, 34, 367
HpySE526I	ACGT	1 cut(s)	286
Hsp92II	CATG	2 cut(s)	167, 319
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	160, 277
LmnI	GCTCC	2 cut(s)	224, 380
LpnPI	CCDG	3 cut(s)	30, 240, 400
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	5 cut(s)	73, 140, 247, 282, 397
MalI	GATC	2 cut(s)	162, 279
MboI	GATC	2 cut(s)	160, 277
MboII	GAAGA	6 cut(s)	74, 125, 145, 148, 220, 269
MfeI	CAATTG	1 cut(s)	362
MhlI	GDGCHC	3 cut(s)	43, 156, 221
MluCI	AATT	2 cut(s)	362, 406
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	2 cut(s)	99, 358
MnlI	CCTC	4 cut(s)	187, 190, 289, 394
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	227
MunI	CAATTG	1 cut(s)	362
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	2 cut(s)	160, 277
NlaIII	CATG	2 cut(s)	167, 319
NlaIV	GGNNCC	2 cut(s)	91, 382
NmeAIII	GCCGAG	1 cut(s)	217
NmuCI	GTSAC	2 cut(s)	73, 140
NspV	TTCGAA	1 cut(s)	60
PagI	TCATGA	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	124
PflMI	CCANNNNNTGG	1 cut(s)	99
PfoI	TCCNGGA	1 cut(s)	225
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
Ppu21I	YACGTR	1 cut(s)	287
PsiI	TTATAA	1 cut(s)	405
Psp124BI	GAGCTC	2 cut(s)	156, 221
PspN4I	GGNNCC	2 cut(s)	91, 382
PstI	CTGCAG	1 cut(s)	10
SacI	GAGCTC	2 cut(s)	156, 221
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	160, 277
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	3 cut(s)	43, 156, 221
SetI	ASST	7 cut(s)	32, 156, 172, 201, 221, 289, 428
SfcI	CTRYAG	1 cut(s)	6
SfuI	TTCGAA	1 cut(s)	60
Sse9I	AATT	2 cut(s)	362, 406
SstI	GAGCTC	2 cut(s)	156, 221
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	2 cut(s)	60, 203
TasI	AATT	2 cut(s)	362, 406
TfiI	GAWTC	1 cut(s)	124
TscAI	CASTG	1 cut(s)	41
TseFI	GTSAC	2 cut(s)	73, 140
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	73, 140
TspDTI	ATGAA	3 cut(s)	180, 221, 408
TspGWI	ACGGA	1 cut(s)	270
TspRI	CASTG	1 cut(s)	41
Van91I	CCANNNNNTGG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.