Rh2CG478400

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0005194
Physical Location & Seq
Reverse (-)
64351567 .. 64358495
6929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG478400.1

Sequence Viewer

Length: 432 bp
ATGGAGAGATCAGGTAATAAGGTGATACGCAAAGGTTATGTCCCAGTGCTTGTGGGGAAACAAGGGGATGAAGATGATCTCATGGAGAAACTATGGATGCCGATCAAGCTTATCAACCATCCTCGCATCATTGCGCTACTCAACAATTCAGCCGATGAATTTGGGTTTCGCCAACAGGGCTTGCTTAAGATAATTACTCAAGATGTTCACCTTGTCAAAGCTAATCGCTGCAGAAGCAAAGTAAACTCCATAGCAAAACCTGAGGACAATGTACAGTATGTATGCATGGTTGGATTGAGGCCTAAAGCTTCAAGGGCGAAGGCAGAGAAGAGGAAGGTTGAATACAACAAGAACATGGATGTGTACGACAAGAAACAAGCAAGAGTAATTACCTATTACTTTGGCAAAGGACATGATTGCTGCAATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

143

Amino Acids

16.45

Weight (kDa)

9.62

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 4 - 64 6.2e-07 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 158
AfaI GTAC 2 cut(s) 273, 365
AflII CTTAAG 1 cut(s) 185
AgsI TTSAA 2 cut(s) 312, 341
AluBI AGCT 3 cut(s) 109, 221, 308
AluI AGCT 3 cut(s) 109, 221, 308
AoxI GGCC 1 cut(s) 299
ApeKI GCWGC 2 cut(s) 228, 420
ApoI RAATTY 1 cut(s) 158
ArsI GACNNNNNNTTYG 2 cut(s) 24, 56
AspLEI GCGC 1 cut(s) 136
AsuHPI GGTGA 2 cut(s) 34, 200
AxyI CCTNAGG 1 cut(s) 261
BarI GAAGNNNNNNTAC 2 cut(s) 326, 358
BbvI GCAGC 2 cut(s) 215, 407
BccI CCATC 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 229
BfrI CTTAAG 1 cut(s) 185
BglI GCCNNNNNGGC 1 cut(s) 177
BisI GCNGC 2 cut(s) 229, 421
BlsI GCNGC 2 cut(s) 230, 422
BmrI ACTGGG 1 cut(s) 38
BmsI GCATC 2 cut(s) 87, 135
BmuI ACTGGG 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 44
Bse21I CCTNAGG 1 cut(s) 261
Bse3DI GCAATG 1 cut(s) 129
Bse8I GATNNNNATC 1 cut(s) 101
BseGI GGATG 4 cut(s) 73, 102, 118, 364
BseJI GATNNNNATC 1 cut(s) 101
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 1 cut(s) 44
BseXI GCAGC 2 cut(s) 215, 407
BshFI GGCC 1 cut(s) 301
BslFI GGGAC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 1 cut(s) 301
Bsp1407I TGTACA 1 cut(s) 271
Bsp143I GATC 3 cut(s) 8, 76, 102
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 1 cut(s) 253
BspMAI CTGCAG 1 cut(s) 233
BspTI CTTAAG 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 129
BsrGI TGTACA 1 cut(s) 271
BsrI ACTGG 1 cut(s) 44
BssMI GATC 3 cut(s) 8, 76, 102
Bst4CI ACNGT 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 323
BstAFI CTTAAG 1 cut(s) 185
BstAUI TGTACA 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 261
BstF5I GGATG 4 cut(s) 73, 102, 118, 364
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 3 cut(s) 11, 79, 105
BstMBI GATC 3 cut(s) 8, 76, 102
BstMWI GCNNNNNNNGC 4 cut(s) 106, 177, 234, 314
BstSFI CTRYAG 1 cut(s) 229
BstV1I GCAGC 2 cut(s) 215, 407
Bsu36I CCTNAGG 1 cut(s) 261
BsuRI GGCC 1 cut(s) 301
BtsCI GGATG 4 cut(s) 73, 102, 118, 364
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 182
CfoI GCGC 1 cut(s) 136
Csp6I GTAC 2 cut(s) 272, 364
CviAII CATG 4 cut(s) 82, 286, 355, 413
CviJI RGCY 6 cut(s) 109, 152, 180, 221, 301, 308
CviKI_1 RGCY 6 cut(s) 109, 152, 180, 221, 301, 308
CviQI GTAC 2 cut(s) 272, 364
DdeI CTNAG 1 cut(s) 261
DpnI GATC 3 cut(s) 10, 78, 104
DpnII GATC 3 cut(s) 8, 76, 102
Eam1104I CTCTTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 323
Eco147I AGGCCT 1 cut(s) 301
Eco81I CCTNAGG 1 cut(s) 261
EcoT22I ATGCAT 1 cut(s) 287
FaeI CATG 4 cut(s) 85, 289, 358, 416
FaiI YATR 9 cut(s) 39, 83, 94, 251, 279, 283, 287, 356, 414
FaqI GGGAC 1 cut(s) 26
FatI CATG 4 cut(s) 81, 285, 354, 412
Fnu4HI GCNGC 2 cut(s) 229, 421
FokI GGATG 4 cut(s) 80, 105, 109, 371
Fsp4HI GCNGC 2 cut(s) 229, 421
GlaI GCGC 1 cut(s) 135
GluI GCNGC 2 cut(s) 229, 421
HaeIII GGCC 1 cut(s) 301
HhaI GCGC 1 cut(s) 136
Hin1II CATG 4 cut(s) 85, 289, 358, 416
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HindIII AAGCTT 2 cut(s) 107, 306
HphI GGTGA 2 cut(s) 34, 200
Hpy166II GTNNAC 3 cut(s) 208, 244, 364
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 3 cut(s) 208, 244, 364
HpyAV CCTTC 2 cut(s) 313, 328
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4V TGCA 3 cut(s) 231, 285, 423
HpyF10VI GCNNNNNNNGC 4 cut(s) 106, 177, 234, 314
HpyF3I CTNAG 1 cut(s) 261
Hsp92II CATG 4 cut(s) 85, 289, 358, 416
HspAI GCGC 1 cut(s) 134
Kzo9I GATC 3 cut(s) 8, 76, 102
LpnPI CCDG 3 cut(s) 57, 161, 273
Lsp1109I GCAGC 2 cut(s) 215, 407
LweI GCATC 2 cut(s) 87, 135
MalI GATC 3 cut(s) 10, 78, 104
MboI GATC 3 cut(s) 8, 76, 102
MboII GAAGA 2 cut(s) 83, 340
MluCI AATT 4 cut(s) 145, 158, 192, 387
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 4 cut(s) 132, 256, 291, 324
Mph1103I ATGCAT 1 cut(s) 287
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 359
MspCI CTTAAG 1 cut(s) 185
MwoI GCNNNNNNNGC 4 cut(s) 106, 177, 234, 314
NdeII GATC 3 cut(s) 8, 76, 102
NlaIII CATG 4 cut(s) 85, 289, 358, 416
NsiI ATGCAT 1 cut(s) 287
PceI AGGCCT 1 cut(s) 301
PkrI GCNGC 2 cut(s) 230, 422
PstI CTGCAG 1 cut(s) 233
RsaI GTAC 2 cut(s) 273, 365
RsaNI GTAC 2 cut(s) 272, 364
RseI CAYNNNNRTG 1 cut(s) 359
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 2 cut(s) 229, 421
Sau3AI GATC 3 cut(s) 8, 76, 102
SfaNI GCATC 2 cut(s) 87, 135
SfcI CTRYAG 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 2 cut(s) 185, 198
SmoI CTYRAG 2 cut(s) 185, 198
Sse9I AATT 4 cut(s) 145, 158, 192, 387
SseBI AGGCCT 1 cut(s) 301
StuI AGGCCT 1 cut(s) 301
TaaI ACNGT 1 cut(s) 276
TasI AATT 4 cut(s) 145, 158, 192, 387
TatI WGTACW 1 cut(s) 271
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 1 cut(s) 51
TseI GCWGC 2 cut(s) 228, 420
TspDTI ATGAA 2 cut(s) 84, 171
TspRI CASTG 1 cut(s) 51
Vha464I CTTAAG 1 cut(s) 185
XapI RAATTY 1 cut(s) 158
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.