Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005194

Physical Location & Seq

Genomic Coordinates Reverse (-)

55278491 .. 55282507

Gene Structure 4017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0431100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGAAGATTTCTCGGAGCAGAGTGGATTTGATGACAACCAAATCGGTTATGATGGGGAGGAGGAACAATTTGAACAGCCGCAAGAGCAGCAGCAATTCGATTCCGGGCGTGAGTTTGAGGCGAACCATAACGTAGTCGTAGATAGTGAAGGCAATGAGTTTAGGGAGTCTTCATTCAGGGCTGATTCGGCTGCGGGAAAACTATTTGTAGGAGGCGTTTCATGGGAGACCACTGAAGAAACCTTTACTAATTACTTCAGCAAATATGGAGAAATAGCAGATTCTGTTATAATGTTAGACAAACATACTGGGAGGCCAAGGGGGTTTGGATTCGTAACATTTTCTGATCCAGTGGCTGCTGATGCAGTTTTGGAGGAAGAACATGTCATAGATGGCAGAGTGGTGGAGGTGAAGAGGACCGTTCCCAGGGAGGATATGGGATTTAAGGGGGGATCAAAAAGAAAGAAGATTTTTGTTGGTGGGATACCAACGTCTTTGAATGATGAGGAATTGGGGGAATATTTCTCTACATTTGGTAGCATTGTTGAACACCAGATTATGGTAGATCACAAAACTGGGAGGTCTAGAGGATTTGGATTTGTCACTTTTGAGAATGAAGATGCTCTTGACAAGGTATTCTCAGAAGGAAAAATACATGAACTTGGAGGCAAACAGGTGGAAATAAAAAGGGCTGAACCTAAAAGGCCTGGTGGTGATTTTAGTGGTAGTGCTGCAAGGTCGTATGGTGGCTTAGGTGGCCCTGCAGCTGGATATGGTGGATATAATTCTGGAGGTCGTTTCAACGGAAAAATGGGCAGGGGCTATGGCGGACCTGGTGGTTATGGTGCTGCCTATGGGAATTACAACAATTATGCTGGAAATTATGCTGCGAACTATGCAGGTTTCTATGGTGGCTATGGTGGATATGGATATGGTTTTGGGTATGGCGGACCCATGTATGGCAATGCTGGATATGGAGCGGGTGGTTATGGCATGCCTGGTGGTTATGGTGCTCCTACTGGTTATGGTGGTGGTAAAGGGTATGGAAGTGGTTCTGCTGGTCGGGGTCAAGGTAGGGGTCGGGGGCGTGGTGGTAGTAGTTATGATGCTGGTAGAGGATATGATAGGAGTGGTGATTCCACAACTGGAAGATATCATCCTTATCAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

390

Amino Acids

41.59

Weight (kDa)

5.14

Isoelectric Point (pI)

35.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	68 - 133	2.1e-14	RNA recognition motif
RRM_7	PF16367	155 - 216	5.2e-06	RNA recognition motif
RRM_1	PF00076	157 - 225	7.8e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005194)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38640 FvH4_6g38650
prunus_persica	Prupe.3G177400_v2.0.a1 Prupe.3G177500_v2.0.a1
pyrus_communis	pycom09g06830 pycom17g12910
rosa_chinensis	RchiOBHm_Chr2g0152101
rosa_laevigata	RLG00000020608 RLG00000020609
rosa_multiflora	Rmu_sc0000760.1_g000006 Rmu_sc0003043.1_g000028
rosa_roxburghii	Rroxscaffold_2G00095920 Rroxscaffold_2G00095930
rosa_rugosa	Rorug02G0431100 Rorug02G0431100
rosa_samantha	Rh2AG491500 Rh2AG491600 Rh2AG491900 Rh2BG504100 Rh2BG504300 Rh2BG504400 Rh2CG478000 Rh2CG478200 Rh2CG478400 Rh2DG515200 Rh2DG515400 Rh2DG515500 Rh2DG515700
rosa_wichuraiana	Rw2G040420 Rw2G040430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	290
Acc36I	ACCTGC	1 cut(s)	890
AccB7I	CCANNNNNTGG	1 cut(s)	559
AccBSI	CCGCTC	1 cut(s)	980
AciI	CCGC	5 cut(s)	80, 194, 828, 948, 980
AclWI	GGATC	2 cut(s)	341, 460
AcuI	CTGAAG	2 cut(s)	241, 255
AfiI	CCNNNNNNNGG	4 cut(s)	426, 559, 767, 959
AflIII	ACRYGT	1 cut(s)	382
AgsI	TTSAA	4 cut(s)	74, 499, 548, 802
AjnI	CCWGG	4 cut(s)	425, 706, 832, 997
AluBI	AGCT	1 cut(s)	767
AluI	AGCT	1 cut(s)	767
Alw21I	GWGCWC	1 cut(s)	1015
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	2 cut(s)	341, 460
AlwNI	CAGNNNCTG	2 cut(s)	284, 356
AoxI	GGCC	3 cut(s)	314, 704, 757
ApeKI	GCWGC	8 cut(s)	88, 91, 191, 356, 731, 764, 848, 887
Asp700I	GAANNNNTTC	1 cut(s)	1051
AspS9I	GGNCC	4 cut(s)	417, 758, 830, 950
AsuC2I	CCSGG	1 cut(s)	106
AsuHPI	GGTGA	3 cut(s)	421, 725, 1145
AvaII	GGWCC	3 cut(s)	417, 830, 950
BaeI	ACNNNNGTAYC	2 cut(s)	476, 509
BarI	GAAGNNNNNNTAC	2 cut(s)	636, 668
BbsI	GAAGAC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	1015
BbvI	GCAGC	8 cut(s)	100, 103, 178, 343, 718, 776, 835, 874
BccI	CCATC	2 cut(s)	47, 386
BciT130I	CCWGG	4 cut(s)	427, 708, 834, 999
BciVI	GTATCC	1 cut(s)	477
BcnI	CCSGG	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	585
BfmI	CTRYAG	1 cut(s)	762
BfuAI	ACCTGC	1 cut(s)	890
BfuI	GTATCC	1 cut(s)	477
BisI	GCNGC	9 cut(s)	80, 89, 92, 192, 357, 732, 765, 849, 888
BlsI	GCNGC	9 cut(s)	81, 90, 93, 193, 358, 733, 766, 850, 889
Bme1390I	CCNGG	5 cut(s)	106, 427, 708, 834, 999
Bme18I	GGWCC	3 cut(s)	417, 830, 950
BmgT120I	GGNCC	4 cut(s)	417, 758, 830, 950
BmiI	GGNNCC	1 cut(s)	952
BmrFI	CCNGG	5 cut(s)	106, 427, 708, 834, 999
BmrI	ACTGGG	2 cut(s)	318, 585
BmsI	GCATC	3 cut(s)	352, 610, 1096
BmuI	ACTGGG	2 cut(s)	318, 585
BpiI	GAAGAC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	810
Bpu10I	CCTNAGC	1 cut(s)	751
BpuMI	CCSGG	1 cut(s)	106
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	3 cut(s)	317, 425, 426
Bsc4I	CCNNNNNNNGG	4 cut(s)	426, 559, 767, 959
Bse1I	ACTGG	5 cut(s)	313, 350, 580, 1024, 1150
Bse3DI	GCAATG	2 cut(s)	160, 970
BseBI	CCWGG	4 cut(s)	427, 708, 834, 999
BseDI	CCNNGG	3 cut(s)	317, 425, 426
BseGI	GGATG	1 cut(s)	1156
BseLI	CCNNNNNNNGG	4 cut(s)	426, 559, 767, 959
BseMI	GCAATG	2 cut(s)	160, 970
BseMII	CTCAG	1 cut(s)	654
BseNI	ACTGG	5 cut(s)	313, 350, 580, 1024, 1150
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	8 cut(s)	100, 103, 178, 343, 718, 776, 835, 874
BshFI	GGCC	3 cut(s)	316, 706, 759
BsiHKAI	GWGCWC	1 cut(s)	1015
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	4 cut(s)	426, 559, 767, 959
BsmAI	GTCTC	1 cut(s)	221
BsnI	GGCC	3 cut(s)	316, 706, 759
Bso31I	GGTCTC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	1015
Bsp143I	GATC	3 cut(s)	346, 452, 565
BspACI	CCGC	5 cut(s)	80, 194, 828, 948, 980
BspANI	GGCC	3 cut(s)	316, 706, 759
BspCNI	CTCAG	1 cut(s)	653
BspLI	GGNNCC	1 cut(s)	952
BspMAI	CTGCAG	1 cut(s)	766
BspMI	ACCTGC	1 cut(s)	890
BspPI	GGATC	2 cut(s)	341, 460
BspTNI	GGTCTC	1 cut(s)	221
BsrBI	CCGCTC	1 cut(s)	980
BsrDI	GCAATG	2 cut(s)	160, 970
BsrI	ACTGG	5 cut(s)	313, 350, 580, 1024, 1150
BssECI	CCNNGG	3 cut(s)	317, 425, 426
BssMI	GATC	3 cut(s)	346, 452, 565
BssT1I	CCWWGG	1 cut(s)	317
Bst2UI	CCWGG	4 cut(s)	427, 708, 834, 999
Bst4CI	ACNGT	1 cut(s)	421
Bst6I	CTCTTC	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	995
BstDEI	CTNAG	2 cut(s)	640, 751
BstF5I	GGATG	1 cut(s)	1156
BstKTI	GATC	3 cut(s)	349, 455, 568
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	3 cut(s)	346, 452, 565
BstMWI	GCNNNNNNNGC	6 cut(s)	85, 88, 188, 362, 756, 896
BstNI	CCWGG	4 cut(s)	427, 708, 834, 999
BstNSI	RCATGY	2 cut(s)	386, 997
BstSCI	CCNGG	5 cut(s)	104, 425, 706, 832, 997
BstSFI	CTRYAG	1 cut(s)	762
BstV1I	GCAGC	8 cut(s)	100, 103, 178, 343, 718, 776, 835, 874
BstV2I	GAAGAC	1 cut(s)	162
BsuI	GTATCC	1 cut(s)	477
BsuRI	GGCC	3 cut(s)	316, 706, 759
BtsCI	GGATG	1 cut(s)	1156
BtsIMutI	CAGTG	2 cut(s)	231, 357
BveI	ACCTGC	1 cut(s)	890
Cac8I	GCNNGC	1 cut(s)	995
CaiI	CAGNNNCTG	2 cut(s)	284, 356
Cfr13I	GGNCC	4 cut(s)	417, 758, 830, 950
CsiI	ACCWGGT	1 cut(s)	832
CviAII	CATG	5 cut(s)	222, 383, 656, 955, 994
DdeI	CTNAG	2 cut(s)	640, 751
DpnI	GATC	3 cut(s)	348, 454, 567
DpnII	GATC	3 cut(s)	346, 452, 565
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
EciI	GGCGGA	2 cut(s)	843, 963
Eco130I	CCWWGG	1 cut(s)	317
Eco147I	AGGCCT	1 cut(s)	706
Eco31I	GGTCTC	1 cut(s)	221
Eco32I	GATATC	1 cut(s)	1154
Eco47I	GGWCC	3 cut(s)	417, 830, 950
Eco57I	CTGAAG	2 cut(s)	241, 255
EcoRII	CCWGG	4 cut(s)	425, 706, 832, 997
EcoRV	GATATC	1 cut(s)	1154
EcoT14I	CCWWGG	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	5 cut(s)	225, 386, 659, 958, 997
FalI	AAGNNNNNCTT	2 cut(s)	609, 641
FatI	CATG	5 cut(s)	221, 382, 655, 954, 993
FauI	CCCGC	2 cut(s)	187, 973
Fnu4HI	GCNGC	9 cut(s)	80, 89, 92, 192, 357, 732, 765, 849, 888
FokI	GGATG	1 cut(s)	1143
Fsp4HI	GCNGC	9 cut(s)	80, 89, 92, 192, 357, 732, 765, 849, 888
FspBI	CTAG	1 cut(s)	585
GluI	GCNGC	9 cut(s)	80, 89, 92, 192, 357, 732, 765, 849, 888
GsuI	CTGGAG	1 cut(s)	810
HaeIII	GGCC	3 cut(s)	316, 706, 759
HapII	CCGG	1 cut(s)	105
Hin1II	CATG	5 cut(s)	225, 386, 659, 958, 997
HinfI	GANTC	6 cut(s)	101, 167, 185, 281, 330, 1136
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	3 cut(s)	421, 725, 1145
Hpy188I	TCNGA	3 cut(s)	16, 346, 643
Hpy188III	TCNNGA	3 cut(s)	585, 626, 789
HpyAV	CCTTC	2 cut(s)	143, 638
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4IV	ACGT	2 cut(s)	132, 491
HpyCH4V	TGCA	4 cut(s)	365, 734, 764, 899
HpyF10VI	GCNNNNNNNGC	6 cut(s)	85, 88, 188, 362, 756, 896
HpyF3I	CTNAG	2 cut(s)	640, 751
HpySE526I	ACGT	2 cut(s)	132, 491
Hsp92II	CATG	5 cut(s)	225, 386, 659, 958, 997
Kzo9I	GATC	3 cut(s)	346, 452, 565
LmnI	GCTCC	3 cut(s)	16, 977, 1018
Lsp1109I	GCAGC	8 cut(s)	100, 103, 178, 343, 718, 776, 835, 874
LweI	GCATC	3 cut(s)	352, 610, 1096
MabI	ACCWGGT	1 cut(s)	832
MaeI	CTAG	1 cut(s)	585
MaeII	ACGT	2 cut(s)	132, 491
MaeIII	GTNAC	2 cut(s)	334, 601
MalI	GATC	3 cut(s)	348, 454, 567
MbiI	CCGCTC	1 cut(s)	980
MboI	GATC	3 cut(s)	346, 452, 565
MboII	GAAGA	8 cut(s)	17, 162, 248, 389, 424, 478, 629, 1161
MhlI	GDGCHC	1 cut(s)	1015
MluCI	AATT	9 cut(s)	68, 95, 250, 509, 784, 859, 868, 880, 1168
MlyI	GAGTC	1 cut(s)	176
MroXI	GAANNNNTTC	1 cut(s)	1051
MseI	TTAA	1 cut(s)	444
MspA1I	CMGCKG	1 cut(s)	767
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	5 cut(s)	106, 427, 708, 834, 999
MvaI	CCWGG	4 cut(s)	427, 708, 834, 999
MwoI	GCNNNNNNNGC	6 cut(s)	85, 88, 188, 362, 756, 896
NciI	CCSGG	1 cut(s)	106
NdeII	GATC	3 cut(s)	346, 452, 565
NlaIII	CATG	5 cut(s)	225, 386, 659, 958, 997
NlaIV	GGNNCC	1 cut(s)	952
NmuCI	GTSAC	1 cut(s)	601
NspI	RCATGY	2 cut(s)	386, 997
PaeI	GCATGC	1 cut(s)	997
PasI	CCCWGGG	1 cut(s)	426
PceI	AGGCCT	1 cut(s)	706
PciI	ACATGT	1 cut(s)	382
PdmI	GAANNNNTTC	1 cut(s)	1051
PfeI	GAWTC	5 cut(s)	101, 185, 281, 330, 1136
PflMI	CCANNNNNTGG	1 cut(s)	559
PkrI	GCNGC	9 cut(s)	81, 90, 93, 193, 358, 733, 766, 850, 889
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PscI	ACATGT	1 cut(s)	382
PsiI	TTATAA	1 cut(s)	290
Psp6I	CCWGG	4 cut(s)	425, 706, 832, 997
PspGI	CCWGG	4 cut(s)	425, 706, 832, 997
PspN4I	GGNNCC	1 cut(s)	952
PspPI	GGNCC	4 cut(s)	417, 758, 830, 950
PstI	CTGCAG	1 cut(s)	766
PstNI	CAGNNNCTG	2 cut(s)	284, 356
PvuII	CAGCTG	1 cut(s)	767
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	9 cut(s)	80, 89, 92, 192, 357, 732, 765, 849, 888
Sau3AI	GATC	3 cut(s)	346, 452, 565
Sau96I	GGNCC	4 cut(s)	417, 758, 830, 950
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	5 cut(s)	106, 427, 708, 834, 999
SduI	GDGCHC	1 cut(s)	1015
SexAI	ACCWGGT	1 cut(s)	832
SfaNI	GCATC	3 cut(s)	352, 610, 1096
SfcI	CTRYAG	1 cut(s)	762
SinI	GGWCC	3 cut(s)	417, 830, 950
SphI	GCATGC	1 cut(s)	997
Sse9I	AATT	9 cut(s)	68, 95, 250, 509, 784, 859, 868, 880, 1168
SseBI	AGGCCT	1 cut(s)	706
SsiI	CCGC	5 cut(s)	80, 194, 828, 948, 980
SspI	AATATT	1 cut(s)	521
SspMI	CTAG	1 cut(s)	585
StuI	AGGCCT	1 cut(s)	706
StyD4I	CCNGG	5 cut(s)	104, 425, 706, 832, 997
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	1 cut(s)	421
TaiI	ACGT	2 cut(s)	135, 494
TaqI	TCGA	1 cut(s)	99
TasI	AATT	9 cut(s)	68, 95, 250, 509, 784, 859, 868, 880, 1168
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	5 cut(s)	101, 185, 281, 330, 1136
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	2 cut(s)	238, 357
TseFI	GTSAC	1 cut(s)	601
TseI	GCWGC	8 cut(s)	88, 91, 191, 356, 731, 764, 848, 887
Tsp45I	GTSAC	1 cut(s)	601
TspDTI	ATGAA	4 cut(s)	162, 210, 630, 672
TspGWI	ACGGA	1 cut(s)	819
TspRI	CASTG	2 cut(s)	238, 357
Van91I	CCANNNNNTGG	1 cut(s)	559
VpaK11BI	GGWCC	3 cut(s)	417, 830, 950
XbaI	TCTAGA	1 cut(s)	584
XceI	RCATGY	2 cut(s)	386, 997
XcmI	CCANNNNNNNNNTGG	1 cut(s)	433
XmnI	GAANNNNTTC	1 cut(s)	1051
XspI	CTAG	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.