RLG00000020609

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005194
Physical Location & Seq
Reverse (-)
66706734 .. 66708721
1988 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020609

Sequence Viewer

Length: 432 bp
ATGGAGAGATCAGGTAATAAGGTAATTCGCAAAGGTTATGTCCCAGTGCTTGTGGGGAAACAAGGGGATGAAGATGATCTCATGGAGAAACTATGGATGCCGATCAAGCTTATCAACCATCCTCGCATCATTGCGCTACTCAACAATTCAGCCGATGTATTTGGGTTTCGCCAACAGGGCTTGCTTAAGATAATTACTCAAGATGTTCACCTTGTCAAAGCTAGTTGCTGCAGAAGCAAAGCAAACTCCATAGCAAAACCTGAGGACAATGTACAGTATGTATGCATGGTTGGATTGAGGCCTAAAGCTTCAAGGCTTTTCCGAATCTATCTTCGATCTGTCGATAAAAGGATTGGTGTTTTGTTGTTGGATTATAGCGTTACCATCGATCTGCCCATAAAAGTTTTATCTTTGATGGTCGGGTTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

144

Amino Acids

16.13

Weight (kDa)

9.6

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 4 - 64 7.3e-06 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 273
AflII CTTAAG 1 cut(s) 185
AgsI TTSAA 1 cut(s) 312
AluBI AGCT 3 cut(s) 109, 221, 308
AluI AGCT 3 cut(s) 109, 221, 308
AoxI GGCC 1 cut(s) 299
ApeKI GCWGC 1 cut(s) 228
ArsI GACNNNNNNTTYG 2 cut(s) 24, 56
AspLEI GCGC 1 cut(s) 136
AsuHPI GGTGA 1 cut(s) 200
AxyI CCTNAGG 1 cut(s) 261
BbvI GCAGC 1 cut(s) 215
BccI CCATC 3 cut(s) 126, 392, 409
BfaI CTAG 1 cut(s) 222
BfmI CTRYAG 1 cut(s) 229
BfrI CTTAAG 1 cut(s) 185
BglI GCCNNNNNGGC 1 cut(s) 177
BisI GCNGC 1 cut(s) 229
BlsI GCNGC 1 cut(s) 230
BmrI ACTGGG 1 cut(s) 38
BmsI GCATC 2 cut(s) 87, 135
BmuI ACTGGG 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 183
Bsa29I ATCGAT 1 cut(s) 387
BsaBI GATNNNNATC 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 44
Bse21I CCTNAGG 1 cut(s) 261
Bse3DI GCAATG 1 cut(s) 129
Bse8I GATNNNNATC 1 cut(s) 101
BseCI ATCGAT 1 cut(s) 387
BseGI GGATG 3 cut(s) 73, 102, 118
BseJI GATNNNNATC 1 cut(s) 101
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 215
BshFI GGCC 1 cut(s) 301
BshVI ATCGAT 1 cut(s) 387
BslFI GGGAC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 1 cut(s) 301
Bsp1407I TGTACA 1 cut(s) 271
Bsp143I GATC 5 cut(s) 8, 76, 102, 335, 388
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 1 cut(s) 253
BspDI ATCGAT 1 cut(s) 387
BspMAI CTGCAG 1 cut(s) 233
BspTI CTTAAG 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 129
BsrGI TGTACA 1 cut(s) 271
BsrI ACTGG 1 cut(s) 44
BssMI GATC 5 cut(s) 8, 76, 102, 335, 388
Bst4CI ACNGT 1 cut(s) 276
BstAFI CTTAAG 1 cut(s) 185
BstAUI TGTACA 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 261
BstF5I GGATG 3 cut(s) 73, 102, 118
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 5 cut(s) 11, 79, 105, 338, 391
BstMBI GATC 5 cut(s) 8, 76, 102, 335, 388
BstMWI GCNNNNNNNGC 3 cut(s) 106, 177, 234
BstSFI CTRYAG 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 215
Bsu15I ATCGAT 1 cut(s) 387
Bsu36I CCTNAGG 1 cut(s) 261
BsuRI GGCC 1 cut(s) 301
BsuTUI ATCGAT 1 cut(s) 387
BtsCI GGATG 3 cut(s) 73, 102, 118
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 182
CfoI GCGC 1 cut(s) 136
ClaI ATCGAT 1 cut(s) 387
Csp6I GTAC 1 cut(s) 272
CviAII CATG 2 cut(s) 82, 286
CviJI RGCY 7 cut(s) 109, 152, 180, 221, 301, 308, 316
CviKI_1 RGCY 7 cut(s) 109, 152, 180, 221, 301, 308, 316
CviQI GTAC 1 cut(s) 272
DdeI CTNAG 1 cut(s) 261
DpnI GATC 5 cut(s) 10, 78, 104, 337, 390
DpnII GATC 5 cut(s) 8, 76, 102, 335, 388
Eco147I AGGCCT 1 cut(s) 301
Eco81I CCTNAGG 1 cut(s) 261
EcoT22I ATGCAT 1 cut(s) 287
FaeI CATG 2 cut(s) 85, 289
FaiI YATR 9 cut(s) 39, 83, 94, 251, 279, 283, 287, 375, 398
FaqI GGGAC 1 cut(s) 26
FatI CATG 2 cut(s) 81, 285
Fnu4HI GCNGC 1 cut(s) 229
FokI GGATG 3 cut(s) 80, 105, 109
Fsp4HI GCNGC 1 cut(s) 229
FspBI CTAG 1 cut(s) 222
GlaI GCGC 1 cut(s) 135
GluI GCNGC 1 cut(s) 229
HaeIII GGCC 1 cut(s) 301
HhaI GCGC 1 cut(s) 136
Hin1II CATG 2 cut(s) 85, 289
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HindIII AAGCTT 2 cut(s) 107, 306
HinfI GANTC 1 cut(s) 324
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 1 cut(s) 323
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 1 cut(s) 208
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4V TGCA 2 cut(s) 231, 285
HpyF10VI GCNNNNNNNGC 3 cut(s) 106, 177, 234
HpyF3I CTNAG 1 cut(s) 261
Hsp92II CATG 2 cut(s) 85, 289
HspAI GCGC 1 cut(s) 134
Kzo9I GATC 5 cut(s) 8, 76, 102, 335, 388
LpnPI CCDG 3 cut(s) 57, 161, 273
Lsp1109I GCAGC 1 cut(s) 215
LweI GCATC 2 cut(s) 87, 135
MaeI CTAG 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 379
MalI GATC 5 cut(s) 10, 78, 104, 337, 390
MboI GATC 5 cut(s) 8, 76, 102, 335, 388
MboII GAAGA 2 cut(s) 83, 323
MluCI AATT 3 cut(s) 24, 145, 192
MmeI TCCRAC 3 cut(s) 271, 348, 405
MnlI CCTC 3 cut(s) 132, 256, 291
Mph1103I ATGCAT 1 cut(s) 287
MseI TTAA 1 cut(s) 186
MspCI CTTAAG 1 cut(s) 185
MwoI GCNNNNNNNGC 3 cut(s) 106, 177, 234
NdeII GATC 5 cut(s) 8, 76, 102, 335, 388
NlaIII CATG 2 cut(s) 85, 289
NsiI ATGCAT 1 cut(s) 287
PceI AGGCCT 1 cut(s) 301
PfeI GAWTC 1 cut(s) 324
PkrI GCNGC 1 cut(s) 230
PstI CTGCAG 1 cut(s) 233
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 1 cut(s) 229
Sau3AI GATC 5 cut(s) 8, 76, 102, 335, 388
SetI ASST 8 cut(s) 16, 24, 37, 111, 213, 223, 262, 310
SfaNI GCATC 2 cut(s) 87, 135
SfcI CTRYAG 1 cut(s) 229
SmlI CTYRAG 2 cut(s) 185, 198
SmoI CTYRAG 2 cut(s) 185, 198
Sse9I AATT 3 cut(s) 24, 145, 192
SseBI AGGCCT 1 cut(s) 301
SspMI CTAG 1 cut(s) 222
StuI AGGCCT 1 cut(s) 301
TaaI ACNGT 1 cut(s) 276
TaqI TCGA 3 cut(s) 334, 342, 387
TasI AATT 3 cut(s) 24, 145, 192
TatI WGTACW 1 cut(s) 271
TfiI GAWTC 1 cut(s) 324
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 1 cut(s) 51
TseI GCWGC 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 84
TspRI CASTG 1 cut(s) 51
Vha464I CTTAAG 1 cut(s) 185
XspI CTAG 1 cut(s) 222
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.