Rh2AG491900

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0005194
Physical Location & Seq
Reverse (-)
71384201 .. 71389652
5452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG491900.1

Sequence Viewer

Length: 231 bp
ATGGAGAGATCAGGTAATAAGGTGATACGCAAAGGTTATGTCCCAGTGCTTGTGGGGAAACAAGGGGATGAAGATGATCTCATGGAGAAACTATGGATGCCGATCAAGCTTATCAACCATCCTCGCATCATTGCGCTACTCAACAATTCAGCCGATGAATTTGGGTTTCGCCAACAGGGCTTGCTTAAGATAATTACTCAAGATGTTCACCTTGTCAAAGCTTATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

76

Amino Acids

8.67

Weight (kDa)

9.1

Isoelectric Point (pI)

36.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 4 - 64 9.9e-08 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 158
AflII CTTAAG 1 cut(s) 185
AluBI AGCT 2 cut(s) 109, 221
AluI AGCT 2 cut(s) 109, 221
ApoI RAATTY 1 cut(s) 158
ArsI GACNNNNNNTTYG 2 cut(s) 24, 56
AspLEI GCGC 1 cut(s) 136
AsuHPI GGTGA 2 cut(s) 34, 200
BccI CCATC 1 cut(s) 126
BfrI CTTAAG 1 cut(s) 185
BglI GCCNNNNNGGC 1 cut(s) 177
BmrI ACTGGG 1 cut(s) 38
BmsI GCATC 2 cut(s) 87, 135
BmuI ACTGGG 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 129
Bse8I GATNNNNATC 1 cut(s) 101
BseGI GGATG 3 cut(s) 73, 102, 118
BseJI GATNNNNATC 1 cut(s) 101
BseMI GCAATG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 26
Bsp143I GATC 3 cut(s) 8, 76, 102
BspTI CTTAAG 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 129
BsrI ACTGG 1 cut(s) 44
BssMI GATC 3 cut(s) 8, 76, 102
BstAFI CTTAAG 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 182
BstF5I GGATG 3 cut(s) 73, 102, 118
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 3 cut(s) 11, 79, 105
BstMBI GATC 3 cut(s) 8, 76, 102
BstMWI GCNNNNNNNGC 2 cut(s) 106, 177
BtsCI GGATG 3 cut(s) 73, 102, 118
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 182
CfoI GCGC 1 cut(s) 136
CviAII CATG 1 cut(s) 82
CviJI RGCY 4 cut(s) 109, 152, 180, 221
CviKI_1 RGCY 4 cut(s) 109, 152, 180, 221
DpnI GATC 3 cut(s) 10, 78, 104
DpnII GATC 3 cut(s) 8, 76, 102
EcoT22I ATGCAT 1 cut(s) 229
FaeI CATG 1 cut(s) 85
FaiI YATR 5 cut(s) 39, 83, 94, 225, 229
FaqI GGGAC 1 cut(s) 26
FatI CATG 1 cut(s) 81
FokI GGATG 3 cut(s) 80, 105, 109
GlaI GCGC 1 cut(s) 135
HhaI GCGC 1 cut(s) 136
Hin1II CATG 1 cut(s) 85
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HindIII AAGCTT 2 cut(s) 107, 219
HphI GGTGA 2 cut(s) 34, 200
Hpy166II GTNNAC 1 cut(s) 208
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 1 cut(s) 208
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 177
Hsp92II CATG 1 cut(s) 85
HspAI GCGC 1 cut(s) 134
Kzo9I GATC 3 cut(s) 8, 76, 102
LpnPI CCDG 2 cut(s) 57, 161
LweI GCATC 2 cut(s) 87, 135
MalI GATC 3 cut(s) 10, 78, 104
MboI GATC 3 cut(s) 8, 76, 102
MboII GAAGA 1 cut(s) 83
MluCI AATT 3 cut(s) 145, 158, 192
MnlI CCTC 1 cut(s) 132
Mph1103I ATGCAT 1 cut(s) 229
MseI TTAA 1 cut(s) 186
MspCI CTTAAG 1 cut(s) 185
MwoI GCNNNNNNNGC 2 cut(s) 106, 177
NdeII GATC 3 cut(s) 8, 76, 102
NlaIII CATG 1 cut(s) 85
NsiI ATGCAT 1 cut(s) 229
SaqAI TTAA 1 cut(s) 186
Sau3AI GATC 3 cut(s) 8, 76, 102
SetI ASST 6 cut(s) 16, 24, 37, 111, 213, 223
SfaNI GCATC 2 cut(s) 87, 135
SmlI CTYRAG 2 cut(s) 185, 198
SmoI CTYRAG 2 cut(s) 185, 198
Sse9I AATT 3 cut(s) 145, 158, 192
TasI AATT 3 cut(s) 145, 158, 192
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 1 cut(s) 51
TspDTI ATGAA 2 cut(s) 84, 171
TspRI CASTG 1 cut(s) 51
Vha464I CTTAAG 1 cut(s) 185
XapI RAATTY 1 cut(s) 158
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.