Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005194

Physical Location & Seq

Genomic Coordinates Reverse (-)

65913934 .. 65916097

Gene Structure 2164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G040420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGATGATGGGGATGCCTACGTTCAAGGTTGTACCAAGCATGGCCGCAGATTTCCCGGACACTAATACTTTGAAGTATGCTCTTGGTGTCAATGAGTTTGAAGATTTTGAAGTCACAGAAGTTGATGGAACCATTCTGTGGGACTTGCTTGAAGAGTTGGAGAATGAAGAGAAGAAGAGCGACAACAGTGAGCTCATTGGTCATGAACCTAATAATATGATGACCATTGCCGAGGTTTCATTGGACAAGAACGAGATCTCCATTCCTGACTCAAACTCAAATTGGGTTGCGATGGATGATATGATGATGGAGACTGATCCATTACATGAAATAGAGGGTTGGTTCACAGATGACATGGTGGGAATGGTGGACTTTGGTTATAGTGTTGGTGATTACTCACAATTGCACAATGGAGTTGGAGCCTCCAGCAATGAAATTACTTACAATTGCTTGTGGGAAGAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.5

Weight (kDa)

4.05

Isoelectric Point (pI)

32.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005194)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38640 FvH4_6g38650
prunus_persica	Prupe.3G177400_v2.0.a1 Prupe.3G177500_v2.0.a1
pyrus_communis	pycom09g06830 pycom17g12910
rosa_chinensis	RchiOBHm_Chr2g0152101
rosa_laevigata	RLG00000020608 RLG00000020609
rosa_multiflora	Rmu_sc0000760.1_g000006 Rmu_sc0003043.1_g000028
rosa_roxburghii	Rroxscaffold_2G00095920 Rroxscaffold_2G00095930
rosa_rugosa	Rorug02G0431100 Rorug02G0431100
rosa_samantha	Rh2AG491500 Rh2AG491600 Rh2AG491900 Rh2BG504100 Rh2BG504300 Rh2BG504400 Rh2CG478000 Rh2CG478200 Rh2CG478400 Rh2DG515200 Rh2DG515400 Rh2DG515500 Rh2DG515700
rosa_wichuraiana	Rw2G040420 Rw2G040430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	138
AciI	CCGC	1 cut(s)	45
AclWI	GGATC	1 cut(s)	311
AcoI	YGGCCR	1 cut(s)	42
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	5 cut(s)	25, 73, 101, 110, 152
AloI	GAACNNNNNNTCC	2 cut(s)	242, 274
AluBI	AGCT	2 cut(s)	193, 465
AluI	AGCT	2 cut(s)	193, 465
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	305
AlwI	GGATC	1 cut(s)	311
AoxI	GGCC	1 cut(s)	42
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	195
BccI	CCATC	3 cut(s)	119, 286, 301
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	305
BglII	AGATCT	1 cut(s)	255
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	56
BmiI	GGNNCC	2 cut(s)	130, 421
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	3
BpmI	CTGGAG	1 cut(s)	409
BpuMI	CCSGG	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse3DI	GCAATG	2 cut(s)	225, 436
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	2 cut(s)	18, 301
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMI	GCAATG	2 cut(s)	225, 436
BshFI	GGCC	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmAI	GTCTC	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	2 cut(s)	255, 316
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	44
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	2 cut(s)	130, 421
BspPI	GGATC	1 cut(s)	311
BspQI	GCTCTTC	1 cut(s)	170
BsrDI	GCAATG	2 cut(s)	225, 436
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	2 cut(s)	255, 316
Bst4CI	ACNGT	1 cut(s)	188
Bst6I	CTCTTC	4 cut(s)	147, 162, 170, 453
BstF5I	GGATG	2 cut(s)	18, 301
BstKTI	GATC	2 cut(s)	258, 319
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	2 cut(s)	255, 316
BstSCI	CCNGG	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	44
BtgZI	GCGATG	1 cut(s)	305
BtsCI	GGATG	2 cut(s)	18, 301
BtsIMutI	CAGTG	1 cut(s)	193
CciI	TCATGA	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	4 cut(s)	40, 203, 326, 355
CviJI	RGCY	4 cut(s)	44, 193, 422, 465
CviKI_1	RGCY	4 cut(s)	44, 193, 422, 465
CviQI	GTAC	1 cut(s)	32
DpnI	GATC	2 cut(s)	257, 318
DpnII	GATC	2 cut(s)	255, 316
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	4 cut(s)	147, 162, 170, 453
EarI	CTCTTC	4 cut(s)	147, 162, 170, 453
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	195
Eco53kI	GAGCTC	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	4 cut(s)	43, 206, 329, 358
FaiI	YATR	8 cut(s)	41, 78, 204, 218, 302, 327, 356, 381
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	4 cut(s)	39, 202, 325, 354
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	2 cut(s)	25, 308
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	409
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	1 cut(s)	56
Hin1II	CATG	4 cut(s)	43, 206, 329, 358
HinfI	GANTC	1 cut(s)	269
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	1 cut(s)	401
Hpy166II	GTNNAC	2 cut(s)	345, 370
Hpy188III	TCNNGA	2 cut(s)	203, 266
Hpy8I	GTNNAC	2 cut(s)	345, 370
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	1 cut(s)	406
HpySE526I	ACGT	1 cut(s)	20
Hsp92II	CATG	4 cut(s)	43, 206, 329, 358
Kzo9I	GATC	2 cut(s)	255, 316
LguI	GCTCTTC	1 cut(s)	170
LmnI	GCTCC	1 cut(s)	419
LpnPI	CCDG	3 cut(s)	69, 279, 439
LweI	GCATC	1 cut(s)	3
MaeII	ACGT	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	2 cut(s)	257, 318
MboI	GATC	2 cut(s)	255, 316
MboII	GAAGA	5 cut(s)	113, 164, 179, 184, 187
MfeI	CAATTG	2 cut(s)	401, 445
MflI	RGATCY	1 cut(s)	255
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	4 cut(s)	280, 401, 435, 445
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	2 cut(s)	138, 397
MnlI	CCTC	3 cut(s)	226, 328, 433
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	56
MunI	CAATTG	2 cut(s)	401, 445
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	2 cut(s)	255, 316
NlaIII	CATG	4 cut(s)	43, 206, 329, 358
NlaIV	GGNNCC	2 cut(s)	130, 421
NmeAIII	GCCGAG	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	112
PagI	TCATGA	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	170
PflMI	CCANNNNNTGG	1 cut(s)	138
PfoI	TCCNGGA	1 cut(s)	54
PkrI	GCNGC	1 cut(s)	46
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
Psp124BI	GAGCTC	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	130, 421
PsuI	RGATCY	1 cut(s)	255
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
SacI	GAGCTC	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	170
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	2 cut(s)	255, 316
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	6 cut(s)	23, 30, 195, 211, 237, 467
SfaNI	GCATC	1 cut(s)	3
Sse9I	AATT	4 cut(s)	280, 401, 435, 445
SsiI	CCGC	1 cut(s)	45
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	188
TaiI	ACGT	1 cut(s)	23
TasI	AATT	4 cut(s)	280, 401, 435, 445
TauI	GCSGC	1 cut(s)	47
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	5 cut(s)	180, 219, 228, 342, 447
TspRI	CASTG	1 cut(s)	193
Van91I	CCANNNNNTGG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.