Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0005194

Physical Location & Seq

Genomic Coordinates Forward (+)

5056831 .. 5057474

Gene Structure 644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g06830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCCCATGATATACCAAAGATCTATGCCCTGCGATATGGCAAAACTATGTGCCGACTGGGATTGCACCAAGTTTTTAAAGCTCATCTGCTCTTGCTTTTTTATATTGTTCTTCACTTTGTGCACCTTTTCAGCCCCATTTTTATATTATACATATATATGGCCTCCGATAATATTTCAGAAAGCATGCAGTTTGTTCTTGGGACAGATGAGTTCGAAGATTTTGAGGTCACAGAAGTTGATGGGGCCCTTCTCCGGGATTTGCTTGAGGAGGAGGAGGGGGAGGAGGAGGAGAAACTAGGGTTTGTAGTGCAATCATCAGTGGGTGCTGATGAGGCCAATAGTATGACGACAGATGGTGGCCAGGTTTCATTGGAGCATGATGGAATTGAAATCTGCTTCCCTGACTCAAAGTGGGAAGATATAGATATGGTGGAGACTGACCTATTATATGAAATGGGAGCTTGGTTCAGAGATGATGACATGGTGTGGATGGTTGATTTTGGTTCTAGTATTGGAGATTATGCACAATTGCAGCACAGTGGTTTTGGAGGCTCCTACAAGGAAATAACTTACAATTGCTTGTGGGAAGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

200

Amino Acids

22.82

Weight (kDa)

4.13

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005194)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38640 FvH4_6g38650
prunus_persica	Prupe.3G177400_v2.0.a1 Prupe.3G177500_v2.0.a1
pyrus_communis	pycom09g06830 pycom17g12910
rosa_chinensis	RchiOBHm_Chr2g0152101
rosa_laevigata	RLG00000020608 RLG00000020609
rosa_multiflora	Rmu_sc0000760.1_g000006 Rmu_sc0003043.1_g000028
rosa_roxburghii	Rroxscaffold_2G00095920 Rroxscaffold_2G00095930
rosa_rugosa	Rorug02G0431100 Rorug02G0431100
rosa_samantha	Rh2AG491500 Rh2AG491600 Rh2AG491900 Rh2BG504100 Rh2BG504300 Rh2BG504400 Rh2CG478000 Rh2CG478200 Rh2CG478400 Rh2DG515200 Rh2DG515400 Rh2DG515500 Rh2DG515700
rosa_wichuraiana	Rw2G040420 Rw2G040430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	361
AdeI	CACNNNGTG	1 cut(s)	121
AfiI	CCNNNNNNNGG	2 cut(s)	255, 256
AgsI	TTSAA	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	363
AluBI	AGCT	2 cut(s)	83, 464
AluI	AGCT	2 cut(s)	83, 464
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	431
Alw44I	GTGCAC	1 cut(s)	122
AoxI	GGCC	5 cut(s)	3, 162, 246, 336, 361
ApaI	GGGCCC	1 cut(s)	250
ApaLI	GTGCAC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	535
AspS9I	GGNCC	3 cut(s)	4, 246, 247
AsuC2I	CCSGG	1 cut(s)	257
AsuII	TTCGAA	1 cut(s)	216
BaeGI	GKGCMC	2 cut(s)	126, 250
BalI	TGGCCA	1 cut(s)	363
BanII	GRGCYC	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	547
BccI	CCATC	4 cut(s)	236, 350, 377, 487
BciT130I	CCWGG	1 cut(s)	365
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	1 cut(s)	431
BfaI	CTAG	2 cut(s)	299, 510
BglII	AGATCT	1 cut(s)	21
BisI	GCNGC	1 cut(s)	536
BlsI	GCNGC	1 cut(s)	537
Bme1390I	CCNGG	2 cut(s)	257, 365
BmgT120I	GGNCC	3 cut(s)	4, 246, 247
BmiI	GGNNCC	3 cut(s)	247, 248, 556
BmrFI	CCNGG	2 cut(s)	257, 365
BmrI	ACTGGG	1 cut(s)	68
BmuI	ACTGGG	1 cut(s)	68
Bpu14I	TTCGAA	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 256
Bse1I	ACTGG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	365
BseGI	GGATG	1 cut(s)	498
BseLI	CCNNNNNNNGG	2 cut(s)	255, 256
BseNI	ACTGG	1 cut(s)	63
BseRI	GAGGAG	6 cut(s)	284, 287, 290, 299, 302, 305
BseSI	GKGCMC	2 cut(s)	126, 250
BseXI	GCAGC	1 cut(s)	547
BshFI	GGCC	5 cut(s)	5, 164, 248, 338, 363
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	256
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	2 cut(s)	255, 256
BsmAI	GTCTC	1 cut(s)	431
BsmFI	GGGAC	1 cut(s)	217
BsnI	GGCC	5 cut(s)	5, 164, 248, 338, 363
Bsp119I	TTCGAA	1 cut(s)	216
Bsp120I	GGGCCC	1 cut(s)	246
Bsp1286I	GDGCHC	2 cut(s)	126, 250
Bsp143I	GATC	1 cut(s)	21
BspANI	GGCC	5 cut(s)	5, 164, 248, 338, 363
BspLI	GGNNCC	3 cut(s)	247, 248, 556
BspT104I	TTCGAA	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	63
BssMI	GATC	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	365
Bst4CI	ACNGT	1 cut(s)	542
BstBI	TTCGAA	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	498
BstKTI	GATC	1 cut(s)	24
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNI	CCWGG	1 cut(s)	365
BstNSI	RCATGY	1 cut(s)	190
BstSCI	CCNGG	2 cut(s)	255, 363
BstSLI	GKGCMC	2 cut(s)	126, 250
BstV1I	GCAGC	1 cut(s)	547
BstX2I	RGATCY	1 cut(s)	21
BstYI	RGATCY	1 cut(s)	21
BsuRI	GGCC	5 cut(s)	5, 164, 248, 338, 363
BtsCI	GGATG	1 cut(s)	498
BtsIMutI	CAGTG	2 cut(s)	327, 547
Cac8I	GCNNGC	1 cut(s)	188
Cfr13I	GGNCC	3 cut(s)	4, 246, 247
CviAII	CATG	4 cut(s)	8, 187, 380, 484
CviJI	RGCY	9 cut(s)	5, 83, 135, 164, 248, 338, 363, 464, 555
CviKI_1	RGCY	9 cut(s)	5, 83, 135, 164, 248, 338, 363, 464, 555
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
DraI	TTTAAA	1 cut(s)	79
DraIII	CACNNNGTG	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	250
EcoO109I	RGGNCCY	2 cut(s)	246, 247
EcoRII	CCWGG	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	250
FaeI	CATG	4 cut(s)	11, 190, 383, 487
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	4 cut(s)	7, 186, 379, 483
Fnu4HI	GCNGC	1 cut(s)	536
FokI	GGATG	1 cut(s)	505
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	1 cut(s)	536
FspBI	CTAG	2 cut(s)	299, 510
GluI	GCNGC	1 cut(s)	536
HaeIII	GGCC	5 cut(s)	5, 164, 248, 338, 363
HapII	CCGG	1 cut(s)	256
Hin1II	CATG	4 cut(s)	11, 190, 383, 487
HinfI	GANTC	1 cut(s)	407
HpaII	CCGG	1 cut(s)	256
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	3 cut(s)	169, 181, 473
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	1 cut(s)	260
HpyCH4III	ACNGT	1 cut(s)	542
HpyCH4V	TGCA	6 cut(s)	67, 124, 190, 313, 527, 535
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
Hsp92II	CATG	4 cut(s)	11, 190, 383, 487
Kzo9I	GATC	1 cut(s)	21
LmnI	GCTCC	3 cut(s)	376, 461, 560
LpnPI	CCDG	6 cut(s)	44, 44, 269, 350, 377, 417
Lsp1109I	GCAGC	1 cut(s)	547
MaeI	CTAG	2 cut(s)	299, 510
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	3 cut(s)	104, 230, 431
MfeI	CAATTG	2 cut(s)	530, 577
MflI	RGATCY	1 cut(s)	21
MhlI	GDGCHC	2 cut(s)	126, 250
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	4 cut(s)	387, 530, 577, 595
MluNI	TGGCCA	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	401
Mox20I	TGGCCA	1 cut(s)	363
MscI	TGGCCA	1 cut(s)	363
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	363
MspI	CCGG	1 cut(s)	256
MspR9I	CCNGG	2 cut(s)	257, 365
MunI	CAATTG	2 cut(s)	530, 577
MvaI	CCWGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	335
NciI	CCSGG	1 cut(s)	257
NdeII	GATC	1 cut(s)	21
NlaIII	CATG	4 cut(s)	11, 190, 383, 487
NlaIV	GGNNCC	3 cut(s)	247, 248, 556
NmuCI	GTSAC	1 cut(s)	229
NspI	RCATGY	1 cut(s)	190
NspV	TTCGAA	1 cut(s)	216
PaeI	GCATGC	1 cut(s)	190
PfoI	TCCNGGA	1 cut(s)	255
PkrI	GCNGC	1 cut(s)	537
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	363
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	3 cut(s)	247, 248, 556
PspOMI	GGGCCC	1 cut(s)	246
PspPI	GGNCC	3 cut(s)	4, 246, 247
PsuI	RGATCY	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	1 cut(s)	536
Sau3AI	GATC	1 cut(s)	21
Sau96I	GGNCC	3 cut(s)	4, 246, 247
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	2 cut(s)	257, 365
SduI	GDGCHC	2 cut(s)	126, 250
SetI	ASST	6 cut(s)	85, 129, 231, 369, 447, 466
SfuI	TTCGAA	1 cut(s)	216
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
SphI	GCATGC	1 cut(s)	190
Sse9I	AATT	4 cut(s)	387, 530, 577, 595
SspI	AATATT	1 cut(s)	175
SspMI	CTAG	2 cut(s)	299, 510
StyD4I	CCNGG	2 cut(s)	255, 363
TaaI	ACNGT	1 cut(s)	542
TaqI	TCGA	1 cut(s)	216
TasI	AATT	4 cut(s)	387, 530, 577, 595
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	2 cut(s)	327, 547
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	1 cut(s)	535
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	2 cut(s)	360, 468
TspRI	CASTG	2 cut(s)	327, 547
VneI	GTGCAC	1 cut(s)	122
XceI	RCATGY	1 cut(s)	190
XspI	CTAG	2 cut(s)	299, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.