Rroxscaffold_2G00095920

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005194
Physical Location & Seq
Forward (+)
17239692 .. 17239946
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00095920.1

Sequence Viewer

Length: 255 bp
ATGGAGAGATCAGGTAATAAGGTGATTCGCAAAGGTTATGTCCCAGTGCTTGTGGGGAAACAAGGGGATGAAGATGATCTCATGGAGAAACTATGGATGCCGATCAAGCTTATCAACCATCCTCGCATCATTGCGCTACTCAACAATTCGGCCGATGAATTTGGGTTTCGCCAACAGGGCTTGCTTAAGATAATTACTCAAGATGTTCACCTTGTCAAAGGTATGATAGAAGAGCTTATCAAATCACAAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

84

Amino Acids

9.6

Weight (kDa)

8.05

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 4 - 64 1.2e-07 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 150
AcsI RAATTY 1 cut(s) 158
AflII CTTAAG 1 cut(s) 185
AluBI AGCT 2 cut(s) 109, 235
AluI AGCT 2 cut(s) 109, 235
AoxI GGCC 1 cut(s) 150
ApoI RAATTY 1 cut(s) 158
ArsI GACNNNNNNTTYG 2 cut(s) 24, 56
AspLEI GCGC 1 cut(s) 136
AsuHPI GGTGA 2 cut(s) 34, 200
BccI CCATC 1 cut(s) 126
BfrI CTTAAG 1 cut(s) 185
BglI GCCNNNNNGGC 1 cut(s) 177
BmrI ACTGGG 1 cut(s) 38
BmsI GCATC 2 cut(s) 87, 135
BmuI ACTGGG 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 129
Bse8I GATNNNNATC 1 cut(s) 101
BseGI GGATG 3 cut(s) 73, 102, 118
BseJI GATNNNNATC 1 cut(s) 101
BseMI GCAATG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 44
BseX3I CGGCCG 1 cut(s) 150
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 1 cut(s) 152
BsiEI CGRYCG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 1 cut(s) 152
Bsp143I GATC 3 cut(s) 8, 76, 102
BspANI GGCC 1 cut(s) 152
BspQI GCTCTTC 1 cut(s) 225
BspTI CTTAAG 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 129
BsrI ACTGG 1 cut(s) 44
BssMI GATC 3 cut(s) 8, 76, 102
Bst6I CTCTTC 1 cut(s) 225
BstAFI CTTAAG 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 182
BstF5I GGATG 3 cut(s) 73, 102, 118
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 3 cut(s) 11, 79, 105
BstMBI GATC 3 cut(s) 8, 76, 102
BstMCI CGRYCG 1 cut(s) 153
BstMWI GCNNNNNNNGC 2 cut(s) 106, 177
BstZI CGGCCG 1 cut(s) 150
BsuRI GGCC 1 cut(s) 152
BtsCI GGATG 3 cut(s) 73, 102, 118
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 182
CfoI GCGC 1 cut(s) 136
CviAII CATG 1 cut(s) 82
CviJI RGCY 4 cut(s) 109, 152, 180, 235
CviKI_1 RGCY 4 cut(s) 109, 152, 180, 235
DpnI GATC 3 cut(s) 10, 78, 104
DpnII GATC 3 cut(s) 8, 76, 102
EaeI YGGCCR 1 cut(s) 150
EagI CGGCCG 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
EclXI CGGCCG 1 cut(s) 150
Eco52I CGGCCG 1 cut(s) 150
FaeI CATG 1 cut(s) 85
FaiI YATR 5 cut(s) 39, 83, 94, 224, 253
FaqI GGGAC 1 cut(s) 26
FatI CATG 1 cut(s) 81
FokI GGATG 3 cut(s) 80, 105, 109
GlaI GCGC 1 cut(s) 135
HaeIII GGCC 1 cut(s) 152
HhaI GCGC 1 cut(s) 136
Hin1II CATG 1 cut(s) 85
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 1 cut(s) 25
HphI GGTGA 2 cut(s) 34, 200
Hpy166II GTNNAC 1 cut(s) 208
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 177
Hsp92II CATG 1 cut(s) 85
HspAI GCGC 1 cut(s) 134
Kzo9I GATC 3 cut(s) 8, 76, 102
LguI GCTCTTC 1 cut(s) 225
LpnPI CCDG 2 cut(s) 57, 161
LweI GCATC 2 cut(s) 87, 135
MalI GATC 3 cut(s) 10, 78, 104
MboI GATC 3 cut(s) 8, 76, 102
MboII GAAGA 2 cut(s) 83, 242
MluCI AATT 3 cut(s) 145, 158, 192
MnlI CCTC 1 cut(s) 132
MseI TTAA 1 cut(s) 186
MspCI CTTAAG 1 cut(s) 185
MwoI GCNNNNNNNGC 2 cut(s) 106, 177
NdeII GATC 3 cut(s) 8, 76, 102
NlaIII CATG 1 cut(s) 85
PciSI GCTCTTC 1 cut(s) 225
PfeI GAWTC 1 cut(s) 25
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 1 cut(s) 186
Sau3AI GATC 3 cut(s) 8, 76, 102
SetI ASST 7 cut(s) 16, 24, 37, 111, 213, 223, 237
SfaNI GCATC 2 cut(s) 87, 135
SmlI CTYRAG 2 cut(s) 185, 198
SmoI CTYRAG 2 cut(s) 185, 198
Sse9I AATT 3 cut(s) 145, 158, 192
TasI AATT 3 cut(s) 145, 158, 192
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 1 cut(s) 51
TspDTI ATGAA 2 cut(s) 84, 171
TspRI CASTG 1 cut(s) 51
Vha464I CTTAAG 1 cut(s) 185
XapI RAATTY 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.