Rh2DG515400

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0005194
Physical Location & Seq
Reverse (-)
73924758 .. 73926353
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG515400.1

Sequence Viewer

Length: 327 bp
ATGTGTGACTGGATACACAACAAGCTCAAGTTGAAAATGAGTTCTTGGAAATCAAAAATGAGTATAAGTAGCAGCAGCTGCAGTTGTTCTTCATCAGCCAAAATCCGGAAAGGTTATGTTCCGATGATTATTGTGGCGAAACACGGGGATGATGATCATGAGCAGAAAGTATGGATAACAATTAAGCTAATGAACCATCCTCGAATTGTTGCACTACTCGAAGACCAAGCAGATGAATTTGGGTTTCACCAACAAGGCTTGCTTAAGATTAGATACGATCTCCATCTTTTTAAAGGTATGATTGAGAGTTTATCAAACCACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

108

Amino Acids

12.46

Weight (kDa)

9.22

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 14 - 103 3.6e-10 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 105
AcsI RAATTY 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 105
AflII CTTAAG 1 cut(s) 263
AgsI TTSAA 1 cut(s) 34
AluBI AGCT 3 cut(s) 25, 78, 187
AluI AGCT 3 cut(s) 25, 78, 187
AlwNI CAGNNNCTG 1 cut(s) 78
Aor13HI TCCGGA 1 cut(s) 105
ApeKI GCWGC 3 cut(s) 72, 75, 78
ApoI RAATTY 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 239
BbsI GAAGAC 1 cut(s) 228
BbvI GCAGC 3 cut(s) 65, 84, 87
BccI CCATC 2 cut(s) 204, 291
BciVI GTATCC 1 cut(s) 6
BclI TGATCA 1 cut(s) 154
BfmI CTRYAG 1 cut(s) 79
BfrI CTTAAG 1 cut(s) 263
BfuI GTATCC 1 cut(s) 6
BisI GCNGC 3 cut(s) 73, 76, 79
BlsI GCNGC 3 cut(s) 74, 77, 80
BpiI GAAGAC 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 11
BsaBI GATNNNNATC 2 cut(s) 153, 282
BsaWI WCCGGW 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse1I ACTGG 1 cut(s) 14
Bse8I GATNNNNATC 2 cut(s) 153, 282
BseAI TCCGGA 1 cut(s) 105
BseGI GGATG 2 cut(s) 154, 196
BseJI GATNNNNATC 2 cut(s) 153, 282
BseLI CCNNNNNNNGG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 14
BseXI GCAGC 3 cut(s) 65, 84, 87
BsiSI CCGG 1 cut(s) 106
BslI CCNNNNNNNGG 1 cut(s) 105
Bsp13I TCCGGA 1 cut(s) 105
Bsp143I GATC 2 cut(s) 154, 277
BspEI TCCGGA 1 cut(s) 105
BspHI TCATGA 1 cut(s) 157
BspMAI CTGCAG 1 cut(s) 83
BspTI CTTAAG 1 cut(s) 263
BsrI ACTGG 1 cut(s) 14
BssMI GATC 2 cut(s) 154, 277
BstAFI CTTAAG 1 cut(s) 263
BstAPI GCANNNNNTGC 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 260
BstF5I GGATG 2 cut(s) 154, 196
BstKTI GATC 2 cut(s) 157, 280
BstMBI GATC 2 cut(s) 154, 277
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstSFI CTRYAG 1 cut(s) 79
BstV1I GCAGC 3 cut(s) 65, 84, 87
BstV2I GAAGAC 1 cut(s) 228
BsuI GTATCC 1 cut(s) 6
BtsCI GGATG 2 cut(s) 154, 196
Cac8I GCNNGC 1 cut(s) 260
CaiI CAGNNNCTG 1 cut(s) 78
CciI TCATGA 1 cut(s) 157
CviAII CATG 1 cut(s) 158
CviJI RGCY 5 cut(s) 25, 78, 98, 187, 258
CviKI_1 RGCY 5 cut(s) 25, 78, 98, 187, 258
DpnI GATC 2 cut(s) 156, 279
DpnII GATC 2 cut(s) 154, 277
DraI TTTAAA 1 cut(s) 292
FaeI CATG 1 cut(s) 161
FaiI YATR 5 cut(s) 65, 117, 159, 172, 299
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FatI CATG 1 cut(s) 157
FbaI TGATCA 1 cut(s) 154
Fnu4HI GCNGC 3 cut(s) 73, 76, 79
FokI GGATG 2 cut(s) 161, 183
Fsp4HI GCNGC 3 cut(s) 73, 76, 79
GluI GCNGC 3 cut(s) 73, 76, 79
HapII CCGG 1 cut(s) 106
Hin1II CATG 1 cut(s) 161
HpaII CCGG 1 cut(s) 106
HphI GGTGA 1 cut(s) 239
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 2 cut(s) 106, 158
HpyCH4V TGCA 2 cut(s) 81, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
Hsp92II CATG 1 cut(s) 161
Kpn2I TCCGGA 1 cut(s) 105
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 2 cut(s) 154, 277
LpnPI CCDG 1 cut(s) 119
Lsp1109I GCAGC 3 cut(s) 65, 84, 87
MaeIII GTNAC 1 cut(s) 5
MalI GATC 2 cut(s) 156, 279
MboI GATC 2 cut(s) 154, 277
MboII GAAGA 2 cut(s) 81, 233
MluCI AATT 3 cut(s) 180, 204, 236
MnlI CCTC 1 cut(s) 210
MroI TCCGGA 1 cut(s) 105
MseI TTAA 3 cut(s) 183, 264, 291
MslI CAYNNNNRTG 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 78
MspCI CTTAAG 1 cut(s) 263
MspI CCGG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 78
NdeII GATC 2 cut(s) 154, 277
NlaIII CATG 1 cut(s) 161
NmuCI GTSAC 1 cut(s) 5
PagI TCATGA 1 cut(s) 157
PkrI GCNGC 3 cut(s) 74, 77, 80
PstI CTGCAG 1 cut(s) 83
PstNI CAGNNNCTG 1 cut(s) 78
PvuII CAGCTG 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 3 cut(s) 183, 264, 291
SatI GCNGC 3 cut(s) 73, 76, 79
Sau3AI GATC 2 cut(s) 154, 277
SetI ASST 5 cut(s) 27, 80, 115, 189, 298
SfcI CTRYAG 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 147
SmlI CTYRAG 2 cut(s) 26, 263
SmoI CTYRAG 2 cut(s) 26, 263
Sse9I AATT 3 cut(s) 180, 204, 236
TaqI TCGA 2 cut(s) 202, 219
TasI AATT 3 cut(s) 180, 204, 236
Tru1I TTAA 3 cut(s) 183, 264, 291
Tru9I TTAA 3 cut(s) 183, 264, 291
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 3 cut(s) 72, 75, 78
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 3 cut(s) 81, 206, 249
Vha464I CTTAAG 1 cut(s) 263
XapI RAATTY 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.