Auxin responsive protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g38640 FvH4_6g38650 |
| prunus_persica | Prupe.3G177400_v2.0.a1 Prupe.3G177500_v2.0.a1 |
| pyrus_communis | pycom09g06830 pycom17g12910 |
| rosa_chinensis | RchiOBHm_Chr2g0152101 |
| rosa_laevigata | RLG00000020608 RLG00000020609 |
| rosa_multiflora | Rmu_sc0000760.1_g000006 Rmu_sc0003043.1_g000028 |
| rosa_roxburghii | Rroxscaffold_2G00095920 Rroxscaffold_2G00095930 |
| rosa_rugosa | Rorug02G0431100 Rorug02G0431100 |
| rosa_samantha | Rh2AG491500 Rh2AG491600 Rh2AG491900 Rh2BG504100 Rh2BG504300 Rh2BG504400 Rh2CG478000 Rh2CG478200 Rh2CG478400 Rh2DG515200 Rh2DG515400 Rh2DG515500 Rh2DG515700 |
| rosa_wichuraiana | Rw2G040420 Rw2G040430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 158 |
| AflII | CTTAAG | 1 cut(s) | 185 |
| AluBI | AGCT | 2 cut(s) | 109, 234 |
| AluI | AGCT | 2 cut(s) | 109, 234 |
| ApoI | RAATTY | 1 cut(s) | 158 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 24, 56 |
| AspLEI | GCGC | 1 cut(s) | 136 |
| AsuHPI | GGTGA | 2 cut(s) | 34, 200 |
| BccI | CCATC | 1 cut(s) | 126 |
| BfrI | CTTAAG | 1 cut(s) | 185 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 177 |
| BmrI | ACTGGG | 1 cut(s) | 38 |
| BmsI | GCATC | 2 cut(s) | 87, 135 |
| BmuI | ACTGGG | 1 cut(s) | 38 |
| BpuEI | CTTGAG | 1 cut(s) | 183 |
| BsaBI | GATNNNNATC | 1 cut(s) | 101 |
| Bse1I | ACTGG | 1 cut(s) | 44 |
| Bse3DI | GCAATG | 1 cut(s) | 129 |
| Bse8I | GATNNNNATC | 1 cut(s) | 101 |
| BseGI | GGATG | 3 cut(s) | 73, 102, 118 |
| BseJI | GATNNNNATC | 1 cut(s) | 101 |
| BseMI | GCAATG | 1 cut(s) | 129 |
| BseNI | ACTGG | 1 cut(s) | 44 |
| BslFI | GGGAC | 1 cut(s) | 26 |
| BsmFI | GGGAC | 1 cut(s) | 26 |
| Bsp143I | GATC | 3 cut(s) | 8, 76, 102 |
| BspTI | CTTAAG | 1 cut(s) | 185 |
| BsrDI | GCAATG | 1 cut(s) | 129 |
| BsrI | ACTGG | 1 cut(s) | 44 |
| BssMI | GATC | 3 cut(s) | 8, 76, 102 |
| BstAFI | CTTAAG | 1 cut(s) | 185 |
| BstC8I | GCNNGC | 1 cut(s) | 182 |
| BstF5I | GGATG | 3 cut(s) | 73, 102, 118 |
| BstHHI | GCGC | 1 cut(s) | 136 |
| BstKTI | GATC | 3 cut(s) | 11, 79, 105 |
| BstMBI | GATC | 3 cut(s) | 8, 76, 102 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 106, 177 |
| BtsCI | GGATG | 3 cut(s) | 73, 102, 118 |
| BtsIMutI | CAGTG | 1 cut(s) | 51 |
| Cac8I | GCNNGC | 1 cut(s) | 182 |
| CfoI | GCGC | 1 cut(s) | 136 |
| CviAII | CATG | 1 cut(s) | 82 |
| CviJI | RGCY | 4 cut(s) | 109, 152, 180, 234 |
| CviKI_1 | RGCY | 4 cut(s) | 109, 152, 180, 234 |
| DpnI | GATC | 3 cut(s) | 10, 78, 104 |
| DpnII | GATC | 3 cut(s) | 8, 76, 102 |
| FaeI | CATG | 1 cut(s) | 85 |
| FaiI | YATR | 4 cut(s) | 39, 83, 94, 224 |
| FaqI | GGGAC | 1 cut(s) | 26 |
| FatI | CATG | 1 cut(s) | 81 |
| FokI | GGATG | 3 cut(s) | 80, 105, 109 |
| GlaI | GCGC | 1 cut(s) | 135 |
| HhaI | GCGC | 1 cut(s) | 136 |
| Hin1II | CATG | 1 cut(s) | 85 |
| Hin6I | GCGC | 1 cut(s) | 134 |
| HinP1I | GCGC | 1 cut(s) | 134 |
| HindIII | AAGCTT | 1 cut(s) | 107 |
| HphI | GGTGA | 2 cut(s) | 34, 200 |
| Hpy166II | GTNNAC | 1 cut(s) | 208 |
| Hpy188III | TCNNGA | 1 cut(s) | 200 |
| Hpy8I | GTNNAC | 1 cut(s) | 208 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 106, 177 |
| Hsp92II | CATG | 1 cut(s) | 85 |
| HspAI | GCGC | 1 cut(s) | 134 |
| Kzo9I | GATC | 3 cut(s) | 8, 76, 102 |
| LpnPI | CCDG | 2 cut(s) | 57, 161 |
| LweI | GCATC | 2 cut(s) | 87, 135 |
| MalI | GATC | 3 cut(s) | 10, 78, 104 |
| MboI | GATC | 3 cut(s) | 8, 76, 102 |
| MboII | GAAGA | 1 cut(s) | 83 |
| MluCI | AATT | 3 cut(s) | 145, 158, 192 |
| MnlI | CCTC | 1 cut(s) | 132 |
| MseI | TTAA | 2 cut(s) | 186, 253 |
| MspCI | CTTAAG | 1 cut(s) | 185 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 106, 177 |
| NdeII | GATC | 3 cut(s) | 8, 76, 102 |
| NlaIII | CATG | 1 cut(s) | 85 |
| SaqAI | TTAA | 2 cut(s) | 186, 253 |
| Sau3AI | GATC | 3 cut(s) | 8, 76, 102 |
| SetI | ASST | 7 cut(s) | 16, 24, 37, 111, 213, 223, 236 |
| SfaNI | GCATC | 2 cut(s) | 87, 135 |
| SmlI | CTYRAG | 2 cut(s) | 185, 198 |
| SmoI | CTYRAG | 2 cut(s) | 185, 198 |
| Sse9I | AATT | 3 cut(s) | 145, 158, 192 |
| TasI | AATT | 3 cut(s) | 145, 158, 192 |
| Tru1I | TTAA | 2 cut(s) | 186, 253 |
| Tru9I | TTAA | 2 cut(s) | 186, 253 |
| TscAI | CASTG | 1 cut(s) | 51 |
| TspDTI | ATGAA | 2 cut(s) | 84, 171 |
| TspRI | CASTG | 1 cut(s) | 51 |
| Vha464I | CTTAAG | 1 cut(s) | 185 |
| XapI | RAATTY | 1 cut(s) | 158 |