FvH4_6g38650

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005194
Physical Location & Seq
Reverse (-)
30593250 .. 30594033
784 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38650.t1

Sequence Viewer

Length: 255 bp
ATGCAGAGATCAGGTAATAAGGTAACTCGCAAAGGTTATGTCCCGGTGCTTGTGGGGAAACAAGGCGATGAAGATGATCTCATGGAGAAACTATGGATGCCGATCAAGCTTCTCGACCATCCTCGCATCGTTGCGCTACTTAAAAATTCAGCTGATGAATTTGGGTTTCGTCAACAGGGCTTGCTTAAGATAGTTACTCAAGATGTTCACCTCTTCAAAGGTGTTGAATGCTGCGGTATGCCGGCACCACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

85

Amino Acids

9.49

Weight (kDa)

9.06

Isoelectric Point (pI)

36.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 3 - 65 1.8e-08 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AciI CCGC 1 cut(s) 234
AcsI RAATTY 2 cut(s) 145, 158
AflII CTTAAG 1 cut(s) 185
AgsI TTSAA 2 cut(s) 217, 227
AluBI AGCT 2 cut(s) 109, 152
AluI AGCT 2 cut(s) 109, 152
ApeKI GCWGC 1 cut(s) 231
ApoI RAATTY 2 cut(s) 145, 158
ArsI GACNNNNNNTTYG 2 cut(s) 24, 56
AspLEI GCGC 1 cut(s) 136
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 200
BanI GGYRCC 1 cut(s) 244
BbvI GCAGC 1 cut(s) 218
BccI CCATC 1 cut(s) 126
BcnI CCSGG 1 cut(s) 44
BfrI CTTAAG 1 cut(s) 185
BisI GCNGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 233
Bme1390I CCNGG 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 44
BmsI GCATC 2 cut(s) 87, 135
BpuEI CTTGAG 1 cut(s) 183
BpuMI CCSGG 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 101
Bse118I RCCGGY 1 cut(s) 241
Bse8I GATNNNNATC 1 cut(s) 101
BseGI GGATG 2 cut(s) 102, 118
BseJI GATNNNNATC 1 cut(s) 101
BseXI GCAGC 1 cut(s) 218
BshNI GGYRCC 1 cut(s) 244
BsiSI CCGG 2 cut(s) 44, 242
BslFI GGGAC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 26
BsmI GAATGC 1 cut(s) 233
Bsp143I GATC 3 cut(s) 8, 76, 102
BspACI CCGC 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 244
BspTI CTTAAG 1 cut(s) 185
BsrFI RCCGGY 1 cut(s) 241
BssAI RCCGGY 1 cut(s) 241
BssMI GATC 3 cut(s) 8, 76, 102
Bst6I CTCTTC 1 cut(s) 218
BstAFI CTTAAG 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 182, 243
BstF5I GGATG 2 cut(s) 102, 118
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 3 cut(s) 11, 79, 105
BstMBI GATC 3 cut(s) 8, 76, 102
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 218
BtgZI GCGATG 1 cut(s) 81
BtsCI GGATG 2 cut(s) 102, 118
Cac8I GCNNGC 2 cut(s) 182, 243
CfoI GCGC 1 cut(s) 136
Cfr10I RCCGGY 1 cut(s) 241
CviAII CATG 1 cut(s) 82
CviJI RGCY 3 cut(s) 109, 152, 180
CviKI_1 RGCY 3 cut(s) 109, 152, 180
DpnI GATC 3 cut(s) 10, 78, 104
DpnII GATC 3 cut(s) 8, 76, 102
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
FaeI CATG 1 cut(s) 85
FaiI YATR 4 cut(s) 39, 83, 94, 239
FaqI GGGAC 1 cut(s) 26
FatI CATG 1 cut(s) 81
Fnu4HI GCNGC 1 cut(s) 232
FokI GGATG 2 cut(s) 105, 109
Fsp4HI GCNGC 1 cut(s) 232
GlaI GCGC 1 cut(s) 135
GluI GCNGC 1 cut(s) 232
HapII CCGG 2 cut(s) 44, 242
HhaI GCGC 1 cut(s) 136
Hin1II CATG 1 cut(s) 85
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HincII GTYRAC 1 cut(s) 173
HindII GTYRAC 1 cut(s) 173
HindIII AAGCTT 1 cut(s) 107
HpaII CCGG 2 cut(s) 44, 242
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 2 cut(s) 173, 208
Hpy188III TCNNGA 2 cut(s) 113, 200
Hpy8I GTNNAC 2 cut(s) 173, 208
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
Hsp92II CATG 1 cut(s) 85
HspAI GCGC 1 cut(s) 134
KroI GCCGGC 1 cut(s) 241
KroNI GCCGGC 1 cut(s) 243
Kzo9I GATC 3 cut(s) 8, 76, 102
LpnPI CCDG 2 cut(s) 57, 161
Lsp1109I GCAGC 1 cut(s) 218
LweI GCATC 2 cut(s) 87, 135
MaeIII GTNAC 2 cut(s) 22, 193
MalI GATC 3 cut(s) 10, 78, 104
MboI GATC 3 cut(s) 8, 76, 102
MboII GAAGA 2 cut(s) 83, 205
MluCI AATT 2 cut(s) 145, 158
MnlI CCTC 2 cut(s) 132, 221
MroNI GCCGGC 1 cut(s) 241
MseI TTAA 2 cut(s) 141, 186
MspA1I CMGCKG 1 cut(s) 152
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 2 cut(s) 44, 242
MspR9I CCNGG 1 cut(s) 44
Mva1269I GAATGC 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 106
NaeI GCCGGC 1 cut(s) 243
NciI CCSGG 1 cut(s) 44
NdeII GATC 3 cut(s) 8, 76, 102
NgoMIV GCCGGC 1 cut(s) 241
NlaIII CATG 1 cut(s) 85
NlaIV GGNNCC 1 cut(s) 246
PctI GAATGC 1 cut(s) 233
PdiI GCCGGC 1 cut(s) 243
PkrI GCNGC 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 246
PvuII CAGCTG 1 cut(s) 152
SaqAI TTAA 2 cut(s) 141, 186
SatI GCNGC 1 cut(s) 232
Sau3AI GATC 3 cut(s) 8, 76, 102
ScrFI CCNGG 1 cut(s) 44
SetI ASST 7 cut(s) 16, 24, 37, 111, 154, 213, 223
SfaNI GCATC 2 cut(s) 87, 135
SmlI CTYRAG 2 cut(s) 185, 198
SmoI CTYRAG 2 cut(s) 185, 198
Sse9I AATT 2 cut(s) 145, 158
SsiI CCGC 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 42
TaqI TCGA 1 cut(s) 114
TasI AATT 2 cut(s) 145, 158
Tru1I TTAA 2 cut(s) 141, 186
Tru9I TTAA 2 cut(s) 141, 186
TseI GCWGC 1 cut(s) 231
TspDTI ATGAA 2 cut(s) 84, 171
Vha464I CTTAAG 1 cut(s) 185
XapI RAATTY 2 cut(s) 145, 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.