Rw2G040430

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005194
Physical Location & Seq
Reverse (-)
65921552 .. 65921842
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G040430.1

Sequence Viewer

Length: 291 bp
ATGAGTTCTTGGAAATCAAAAATGAGTATAAGTAGCAGCAGCTGCAGTTGTTCTTCATCAGCCAAAATCCGGAAAGGTTATGTTCCGATGATTATTGTGGCGAAACACGGGGATGATGATCATGAGCAGAAAGTATGGATACCAATTAAGCTAATGAACCATCCTCGAATTGTTGCACTACTCGAAGACCAAGCAGATGAATTTGGGTTTCACCAACAAGGCTTGCTTAAGATTAGATACGATCTCCATCTTTTTAAAGGTATGATTGAGAGTTTATCAAACCACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

96

Amino Acids

10.94

Weight (kDa)

8.98

Isoelectric Point (pI)

44.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 5 - 91 9.9e-11 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 69
AcsI RAATTY 1 cut(s) 200
AfiI CCNNNNNNNGG 1 cut(s) 69
AflII CTTAAG 1 cut(s) 227
AluBI AGCT 2 cut(s) 42, 151
AluI AGCT 2 cut(s) 42, 151
AlwNI CAGNNNCTG 1 cut(s) 42
Aor13HI TCCGGA 1 cut(s) 69
ApeKI GCWGC 3 cut(s) 36, 39, 42
ApoI RAATTY 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 192
BbvI GCAGC 3 cut(s) 29, 48, 51
BccI CCATC 2 cut(s) 168, 255
BciVI GTATCC 1 cut(s) 132
BclI TGATCA 1 cut(s) 118
BfmI CTRYAG 1 cut(s) 43
BfrI CTTAAG 1 cut(s) 227
BfuI GTATCC 1 cut(s) 132
BisI GCNGC 3 cut(s) 37, 40, 43
BlsI GCNGC 3 cut(s) 38, 41, 44
BpiI GAAGAC 1 cut(s) 192
BsaBI GATNNNNATC 2 cut(s) 117, 246
BsaWI WCCGGW 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse8I GATNNNNATC 2 cut(s) 117, 246
BseAI TCCGGA 1 cut(s) 69
BseGI GGATG 2 cut(s) 118, 160
BseJI GATNNNNATC 2 cut(s) 117, 246
BseLI CCNNNNNNNGG 1 cut(s) 69
BseXI GCAGC 3 cut(s) 29, 48, 51
BsiSI CCGG 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 69
Bsp13I TCCGGA 1 cut(s) 69
Bsp143I GATC 2 cut(s) 118, 241
BspEI TCCGGA 1 cut(s) 69
BspHI TCATGA 1 cut(s) 121
BspMAI CTGCAG 1 cut(s) 47
BspTI CTTAAG 1 cut(s) 227
BssMI GATC 2 cut(s) 118, 241
BstAFI CTTAAG 1 cut(s) 227
BstAPI GCANNNNNTGC 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 224
BstF5I GGATG 2 cut(s) 118, 160
BstKTI GATC 2 cut(s) 121, 244
BstMBI GATC 2 cut(s) 118, 241
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstSFI CTRYAG 1 cut(s) 43
BstV1I GCAGC 3 cut(s) 29, 48, 51
BstV2I GAAGAC 1 cut(s) 192
BsuI GTATCC 1 cut(s) 132
BtsCI GGATG 2 cut(s) 118, 160
Cac8I GCNNGC 1 cut(s) 224
CaiI CAGNNNCTG 1 cut(s) 42
CciI TCATGA 1 cut(s) 121
CviAII CATG 1 cut(s) 122
CviJI RGCY 4 cut(s) 42, 62, 151, 222
CviKI_1 RGCY 4 cut(s) 42, 62, 151, 222
DpnI GATC 2 cut(s) 120, 243
DpnII GATC 2 cut(s) 118, 241
DraI TTTAAA 1 cut(s) 256
FaeI CATG 1 cut(s) 125
FaiI YATR 5 cut(s) 29, 81, 123, 136, 263
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FatI CATG 1 cut(s) 121
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 3 cut(s) 37, 40, 43
FokI GGATG 2 cut(s) 125, 147
Fsp4HI GCNGC 3 cut(s) 37, 40, 43
GluI GCNGC 3 cut(s) 37, 40, 43
HapII CCGG 1 cut(s) 70
Hin1II CATG 1 cut(s) 125
HpaII CCGG 1 cut(s) 70
HphI GGTGA 1 cut(s) 203
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 2 cut(s) 70, 122
HpyCH4V TGCA 2 cut(s) 45, 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
Hsp92II CATG 1 cut(s) 125
Kpn2I TCCGGA 1 cut(s) 69
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 2 cut(s) 118, 241
LpnPI CCDG 1 cut(s) 83
Lsp1109I GCAGC 3 cut(s) 29, 48, 51
MalI GATC 2 cut(s) 120, 243
MboI GATC 2 cut(s) 118, 241
MboII GAAGA 2 cut(s) 45, 197
MluCI AATT 3 cut(s) 144, 168, 200
MnlI CCTC 1 cut(s) 174
MroI TCCGGA 1 cut(s) 69
MseI TTAA 3 cut(s) 147, 228, 255
MslI CAYNNNNRTG 1 cut(s) 111
MspA1I CMGCKG 1 cut(s) 42
MspCI CTTAAG 1 cut(s) 227
MspI CCGG 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 42
NdeII GATC 2 cut(s) 118, 241
NlaIII CATG 1 cut(s) 125
PagI TCATGA 1 cut(s) 121
PkrI GCNGC 3 cut(s) 38, 41, 44
PstI CTGCAG 1 cut(s) 47
PstNI CAGNNNCTG 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 42
RseI CAYNNNNRTG 1 cut(s) 111
SaqAI TTAA 3 cut(s) 147, 228, 255
SatI GCNGC 3 cut(s) 37, 40, 43
Sau3AI GATC 2 cut(s) 118, 241
SetI ASST 4 cut(s) 44, 79, 153, 262
SfcI CTRYAG 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 3 cut(s) 144, 168, 200
TaqI TCGA 2 cut(s) 166, 183
TasI AATT 3 cut(s) 144, 168, 200
Tru1I TTAA 3 cut(s) 147, 228, 255
Tru9I TTAA 3 cut(s) 147, 228, 255
TseI GCWGC 3 cut(s) 36, 39, 42
TspDTI ATGAA 3 cut(s) 45, 170, 213
Vha464I CTTAAG 1 cut(s) 227
XapI RAATTY 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.