FvH4_6g39711

OTU domain-containing protein DDB_G0284757-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002298
Physical Location & Seq
Forward (+)
31358449 .. 31362775
4327 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39711.t2

Sequence Viewer

Length: 687 bp
ATGAATGGAAGCTATAGCAATGCAAGTGCAAGTGCAAGCTCAAGCTCGAGCTTGGATAGCAGTTCTCATGATACCGAGGATGACCAGACCATTGCAACTATCTTGGGTGAAGAGGAAAAGCTGAAAAGTGGTGGCAAGCTGGGGAAGAGACTCTCCCACTTGGATTCAATTCCGCACACTCCCAGAGTGAATGGGGAGATACCTGACGTGAATGATGCTACCCAAGACCATAAGAGGCTTTCAGAAAGGTTGGCTACCTATGATCTAGCTGAGCTGCAAATTGAGGGTGATGGAAATTGCCAGTTCCGAGCAATAGCTGATCAATTGTTTCGCAATCCAGATTACCATAAGCATGTAAGAAAGCAGGTTATAAAGCAGTTAAAGCGTCACAGAAAACTCTATGAAGCTTATGTCCCGATGAAGTACAAAAGTTACTTGAGGAAGATGAAAAAAAAAGGGGAGTGGGGAGATCATCTTACCCTACAGGCAGCTGCAGACCGATTTGGAGCCAAAATTTGTGTAATCACCTCTTTTCGGGATACTTGCTATGTTGAGATCCTTCCTAAAGATAGGAATCCTACCCGAGAGCTTTGGCTGAGCTTCTGGAGTGAAGTGCATTACAACTCACTATATGCTACTGCAGATGTTCCCACAAGAAGTCCTAAAAAAAAGCATTGGCTTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

229

Amino Acids

26.13

Weight (kDa)

9.08

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 96 - 186 9e-15 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 371
Acc36I ACCTGC 1 cut(s) 355
AciI CCGC 1 cut(s) 173
AclWI GGATC 1 cut(s) 550
AcsI RAATTY 1 cut(s) 513
AfaI GTAC 1 cut(s) 425
AfiI CCNNNNNNNGG 1 cut(s) 534
AgsI TTSAA 1 cut(s) 168
AjiI CACGTC 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 142
AlwI GGATC 1 cut(s) 550
Ama87I CYCGRG 2 cut(s) 46, 582
ApeKI GCWGC 3 cut(s) 274, 488, 491
ApoI RAATTY 1 cut(s) 513
AsuHPI GGTGA 3 cut(s) 119, 299, 517
AvaI CYCGRG 2 cut(s) 46, 582
BbvI GCAGC 3 cut(s) 261, 478, 500
BccI CCATC 1 cut(s) 284
BciVI GTATCC 1 cut(s) 532
BclI TGATCA 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 142
BfaI CTAG 1 cut(s) 266
BfmI CTRYAG 4 cut(s) 13, 482, 492, 639
BfuAI ACCTGC 1 cut(s) 355
BfuI GTATCC 1 cut(s) 532
BisI GCNGC 3 cut(s) 275, 489, 492
BlpI GCTNAGC 2 cut(s) 270, 596
BlsI GCNGC 3 cut(s) 276, 490, 493
BmeT110I CYCGRG 2 cut(s) 46, 582
BmgBI CACGTC 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 508
BmsI GCATC 1 cut(s) 205
BpmI CTGGAG 1 cut(s) 625
Bpu1102I GCTNAGC 2 cut(s) 270, 596
BpuEI CTTGAG 2 cut(s) 25, 457
BsaBI GATNNNNATC 1 cut(s) 573
BsaJI CCNNGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 534
Bse1I ACTGG 1 cut(s) 301
Bse3DI GCAATG 2 cut(s) 25, 90
Bse8I GATNNNNATC 1 cut(s) 573
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 85
BseJI GATNNNNATC 1 cut(s) 573
BseLI CCNNNNNNNGG 1 cut(s) 534
BseMI GCAATG 2 cut(s) 25, 90
BseMII CTCAG 2 cut(s) 261, 587
BseNI ACTGG 1 cut(s) 301
BseXI GCAGC 3 cut(s) 261, 478, 500
BseYI CCCAGC 1 cut(s) 139
BsiHKCI CYCGRG 2 cut(s) 46, 582
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 1 cut(s) 534
BsmAI GTCTC 1 cut(s) 142
BsmFI GGGAC 1 cut(s) 398
BsoBI CYCGRG 2 cut(s) 46, 582
Bsp143I GATC 4 cut(s) 262, 319, 469, 555
Bsp1720I GCTNAGC 2 cut(s) 270, 596
BspACI CCGC 1 cut(s) 173
BspCNI CTCAG 2 cut(s) 262, 588
BspHI TCATGA 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 508
BspMAI CTGCAG 2 cut(s) 496, 643
BspMI ACCTGC 1 cut(s) 355
BspPI GGATC 1 cut(s) 550
BsrDI GCAATG 2 cut(s) 25, 90
BsrI ACTGG 1 cut(s) 301
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 4 cut(s) 262, 319, 469, 555
Bst6I CTCTTC 2 cut(s) 105, 140
BstC8I GCNNGC 2 cut(s) 37, 137
BstDEI CTNAG 2 cut(s) 270, 596
BstF5I GGATG 1 cut(s) 85
BstKTI GATC 4 cut(s) 265, 322, 472, 558
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 4 cut(s) 262, 319, 469, 555
BstMWI GCNNNNNNNGC 2 cut(s) 57, 382
BstNSI RCATGY 1 cut(s) 356
BstSFI CTRYAG 4 cut(s) 13, 482, 492, 639
BstV1I GCAGC 3 cut(s) 261, 478, 500
BstX2I RGATCY 1 cut(s) 555
BstYI RGATCY 1 cut(s) 555
BsuI GTATCC 1 cut(s) 532
BtrI CACGTC 1 cut(s) 208
BtsCI GGATG 1 cut(s) 85
BveI ACCTGC 1 cut(s) 355
Cac8I GCNNGC 2 cut(s) 37, 137
CciI TCATGA 1 cut(s) 67
CseI GACGC 1 cut(s) 374
Csp6I GTAC 1 cut(s) 424
CviAII CATG 2 cut(s) 68, 353
CviQI GTAC 1 cut(s) 424
DdeI CTNAG 2 cut(s) 270, 596
DpnI GATC 4 cut(s) 264, 321, 471, 557
DpnII GATC 4 cut(s) 262, 319, 469, 555
Eam1104I CTCTTC 2 cut(s) 105, 140
EarI CTCTTC 2 cut(s) 105, 140
Eco88I CYCGRG 2 cut(s) 46, 582
FaeI CATG 2 cut(s) 71, 356
FaqI GGGAC 1 cut(s) 398
FatI CATG 2 cut(s) 67, 352
FbaI TGATCA 1 cut(s) 319
Fnu4HI GCNGC 3 cut(s) 275, 489, 492
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 3 cut(s) 275, 489, 492
FspBI CTAG 1 cut(s) 266
GluI GCNGC 3 cut(s) 275, 489, 492
GsaI CCCAGC 1 cut(s) 143
GsuI CTGGAG 1 cut(s) 625
HgaI GACGC 1 cut(s) 374
Hin1II CATG 2 cut(s) 71, 356
HindIII AAGCTT 1 cut(s) 405
HinfI GANTC 3 cut(s) 150, 164, 574
HphI GGTGA 3 cut(s) 119, 299, 517
Hpy188I TCNGA 2 cut(s) 244, 308
Hpy188III TCNNGA 5 cut(s) 68, 338, 415, 536, 604
HpyAV CCTTC 1 cut(s) 569
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 8 cut(s) 23, 29, 35, 95, 277, 494, 616, 641
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 382
HpyF3I CTNAG 2 cut(s) 270, 596
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 2 cut(s) 71, 356
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 4 cut(s) 262, 319, 469, 555
LmnI GCTCC 1 cut(s) 506
LpnPI CCDG 9 cut(s) 98, 125, 196, 216, 314, 350, 351, 470, 589
Lsp1109I GCAGC 3 cut(s) 261, 478, 500
LweI GCATC 1 cut(s) 205
MaeI CTAG 1 cut(s) 266
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 2 cut(s) 386, 431
MalI GATC 4 cut(s) 264, 321, 471, 557
MboI GATC 4 cut(s) 262, 319, 469, 555
MboII GAAGA 3 cut(s) 122, 157, 454
MfeI CAATTG 1 cut(s) 323
MflI RGATCY 1 cut(s) 555
MluCI AATT 5 cut(s) 168, 279, 295, 323, 513
MlyI GAGTC 1 cut(s) 144
MnlI CCTC 6 cut(s) 70, 106, 228, 277, 432, 538
MseI TTAA 1 cut(s) 380
MslI CAYNNNNRTG 1 cut(s) 351
MspA1I CMGCKG 1 cut(s) 491
MunI CAATTG 1 cut(s) 323
MwoI GCNNNNNNNGC 2 cut(s) 57, 382
NdeII GATC 4 cut(s) 262, 319, 469, 555
NlaIII CATG 2 cut(s) 71, 356
NlaIV GGNNCC 1 cut(s) 508
NmuCI GTSAC 1 cut(s) 386
NspI RCATGY 1 cut(s) 356
PaeR7I CTCGAG 1 cut(s) 46
PagI TCATGA 1 cut(s) 67
PfeI GAWTC 2 cut(s) 164, 574
PkrI GCNGC 3 cut(s) 276, 490, 493
PleI GAGTC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 144
PsiI TTATAA 1 cut(s) 371
PspFI CCCAGC 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 508
PspXI VCTCGAGB 1 cut(s) 46
PstI CTGCAG 2 cut(s) 496, 643
PsuI RGATCY 1 cut(s) 555
PvuII CAGCTG 1 cut(s) 491
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
RseI CAYNNNNRTG 1 cut(s) 351
SaqAI TTAA 1 cut(s) 380
SatI GCNGC 3 cut(s) 275, 489, 492
Sau3AI GATC 4 cut(s) 262, 319, 469, 555
SchI GAGTC 1 cut(s) 144
SfaNI GCATC 1 cut(s) 205
SfcI CTRYAG 4 cut(s) 13, 482, 492, 639
Sfr274I CTCGAG 1 cut(s) 46
SlaI CTCGAG 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 351
SmlI CTYRAG 3 cut(s) 40, 46, 436
SmoI CTYRAG 3 cut(s) 40, 46, 436
Sse9I AATT 5 cut(s) 168, 279, 295, 323, 513
SsiI CCGC 1 cut(s) 173
SspMI CTAG 1 cut(s) 266
TaiI ACGT 1 cut(s) 210
TaqI TCGA 1 cut(s) 47
TaqII GACCGA 1 cut(s) 513
TasI AATT 5 cut(s) 168, 279, 295, 323, 513
TatI WGTACW 1 cut(s) 423
TfiI GAWTC 2 cut(s) 164, 574
Tru1I TTAA 1 cut(s) 380
Tru9I TTAA 1 cut(s) 380
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 3 cut(s) 274, 488, 491
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 4 cut(s) 17, 417, 434, 461
XapI RAATTY 1 cut(s) 513
XceI RCATGY 1 cut(s) 356
XhoI CTCGAG 1 cut(s) 46
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.