Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002298

Physical Location & Seq

Genomic Coordinates Forward (+)

42026105 .. 42034003

Gene Structure 7899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G019200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAATGGAAGCTATAGCAATGCAAATGTAAGCTCAAGCTCGAGTTTGAATAGCAGCTCTCATGATACCGAGGATGACCTGACCATTGCAATTGTTTTGGCAGAAGAGGAAAAGCAGAAAAATGATGGCAAGCTGGGGAAAAGACTCTCCCACTTAGATTTGATTCCGCACACTCTCAGGGTGAATGGGGAGATACCTGACGTGAATGATGCTACTCAAGACCATAAGAGGCTTTCAGAAAGAGATCATTCTGAAAAAGAAGTTAAAACTGGCGGACAAGCTGCTGGATGCTCCACCCGACACATTAGGTGCTACTGTCTTGGCACTACACTATGCAAGTATGAGAGAACTTTAGTGAAGTTGTTGTTAAAGAATCATCAAGCTCATAACCACTTGGCGAGTGATCATAGCCAATCACTATGGCATGCAATTGGTTTCCGTACTGGTCGTACAGTAAGATATCCGACTTTAAGATATGGCAGAGGAAGCTGTAGAAAAGGCAAATTGTGCTTTTTTATTCCATTTCAATTGTATAGACCTTGTGCAGGATATAACCCACTCTATAGATACCTAACATCAACAAAACCTTCCAAAACACATGTCGTTTTGGGATGGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

206

Amino Acids

23.15

Weight (kDa)

9.34

Isoelectric Point (pI)

32.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22260 AT3G22260 AT3G22260 AT3G22260 AT3G22260 AT3G22260
fragaria_vesca	FvH4_6g39711 FvH4_6g39711 FvH4_6g39711
malus_domestica	MD09G1137400.v1.1 MD17G1127700.v1.1
prunus_persica	Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.7G037800_v2.0.a1
pyrus_communis	pycom09g05850 pycom17g12000
rosa_chinensis	RchiOBHm_Chr2g0153801 RchiOBHm_Chr5g0025881 RchiOBHm_Chr7g0227291
rosa_laevigata	RLG00000020725
rosa_multiflora	Rmu_sc0011717.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326950
rosa_rugosa	Rorug02G0441900 Rorug02G0442000
rosa_samantha	Rh1DG092300 Rh2AG505900 Rh2CG183800 Rh2DG527900
rosa_wichuraiana	Rw1G019200 Rw2G041510 Rw7G022710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	167, 273
AfaI	GTAC	2 cut(s)	442, 451
AfiI	CCNNNNNNNGG	1 cut(s)	545
AflIII	ACRYGT	1 cut(s)	598
AgsI	TTSAA	2 cut(s)	49, 527
AjiI	CACGTC	1 cut(s)	202
AluBI	AGCT	8 cut(s)	12, 33, 39, 57, 133, 281, 383, 489
AluI	AGCT	8 cut(s)	12, 33, 39, 57, 133, 281, 383, 489
Ama87I	CYCGRG	1 cut(s)	40
ApeKI	GCWGC	2 cut(s)	54, 281
ArsI	GACNNNNNNTTYG	2 cut(s)	585, 617
AsuHPI	GGTGA	1 cut(s)	193
AvaI	CYCGRG	1 cut(s)	40
BbvI	GCAGC	2 cut(s)	66, 268
BccI	CCATC	2 cut(s)	119, 606
BclI	TGATCA	1 cut(s)	403
BfmI	CTRYAG	3 cut(s)	13, 490, 562
BisI	GCNGC	2 cut(s)	55, 282
BlsI	GCNGC	2 cut(s)	56, 283
BmeT110I	CYCGRG	1 cut(s)	40
BmgBI	CACGTC	1 cut(s)	202
BmsI	GCATC	2 cut(s)	199, 278
BpuEI	CTTGAG	2 cut(s)	19, 201
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	1 cut(s)	545
Bse1I	ACTGG	2 cut(s)	274, 448
Bse3DI	GCAATG	2 cut(s)	25, 84
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	3 cut(s)	79, 293, 617
BseLI	CCNNNNNNNGG	1 cut(s)	545
BseMI	GCAATG	2 cut(s)	25, 84
BseMII	CTCAG	1 cut(s)	190
BseNI	ACTGG	2 cut(s)	274, 448
BseXI	GCAGC	2 cut(s)	66, 268
BseYI	CCCAGC	1 cut(s)	133
BsgI	GTGCAG	1 cut(s)	564
BsiHKCI	CYCGRG	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	545
BsoBI	CYCGRG	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	244, 403
BspACI	CCGC	2 cut(s)	167, 273
BspCNI	CTCAG	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	61
BsrDI	GCAATG	2 cut(s)	25, 84
BsrI	ACTGG	2 cut(s)	274, 448
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	244, 403
Bst4CI	ACNGT	2 cut(s)	317, 454
Bst6I	CTCTTC	1 cut(s)	99
BstAPI	GCANNNNNTGC	1 cut(s)	507
BstC8I	GCNNGC	2 cut(s)	131, 426
BstDEI	CTNAG	2 cut(s)	154, 176
BstENI	CCTNNNNNAGG	1 cut(s)	543
BstF5I	GGATG	3 cut(s)	79, 293, 617
BstKTI	GATC	2 cut(s)	247, 406
BstMBI	GATC	2 cut(s)	244, 403
BstMWI	GCNNNNNNNGC	2 cut(s)	486, 507
BstNSI	RCATGY	2 cut(s)	428, 602
BstSFI	CTRYAG	3 cut(s)	13, 490, 562
BstV1I	GCAGC	2 cut(s)	66, 268
BtrI	CACGTC	1 cut(s)	202
BtsCI	GGATG	3 cut(s)	79, 293, 617
Cac8I	GCNNGC	2 cut(s)	131, 426
CciI	TCATGA	1 cut(s)	61
Csp6I	GTAC	2 cut(s)	441, 450
CviAII	CATG	3 cut(s)	62, 425, 599
CviQI	GTAC	2 cut(s)	441, 450
DdeI	CTNAG	2 cut(s)	154, 176
DpnI	GATC	2 cut(s)	246, 405
DpnII	GATC	2 cut(s)	244, 403
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
EciI	GGCGGA	1 cut(s)	288
Eco32I	GATATC	1 cut(s)	461
Eco88I	CYCGRG	1 cut(s)	40
EcoNI	CCTNNNNNAGG	1 cut(s)	543
EcoRV	GATATC	1 cut(s)	461
FaeI	CATG	3 cut(s)	65, 428, 602
FatI	CATG	3 cut(s)	61, 424, 598
FbaI	TGATCA	1 cut(s)	403
Fnu4HI	GCNGC	2 cut(s)	55, 282
FokI	GGATG	2 cut(s)	86, 300
Fsp4HI	GCNGC	2 cut(s)	55, 282
GluI	GCNGC	2 cut(s)	55, 282
GsaI	CCCAGC	1 cut(s)	137
Hin1II	CATG	3 cut(s)	65, 428, 602
HinfI	GANTC	3 cut(s)	144, 163, 373
HphI	GGTGA	1 cut(s)	193
Hpy188I	TCNGA	3 cut(s)	238, 253, 465
Hpy188III	TCNNGA	2 cut(s)	62, 218
HpyAV	CCTTC	1 cut(s)	597
HpyCH4III	ACNGT	2 cut(s)	317, 454
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	5 cut(s)	23, 89, 336, 428, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	486, 507
HpyF3I	CTNAG	2 cut(s)	154, 176
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	3 cut(s)	65, 428, 602
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	2 cut(s)	244, 403
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	8 cut(s)	92, 119, 163, 210, 255, 270, 429, 531
Lsp1109I	GCAGC	2 cut(s)	66, 268
LweI	GCATC	2 cut(s)	199, 278
MaeII	ACGT	1 cut(s)	201
MalI	GATC	2 cut(s)	246, 405
MboI	GATC	2 cut(s)	244, 403
MboII	GAAGA	1 cut(s)	116
MfeI	CAATTG	3 cut(s)	90, 429, 527
MluCI	AATT	4 cut(s)	90, 429, 503, 527
MlyI	GAGTC	1 cut(s)	138
MmeI	TCCRAC	1 cut(s)	488
MnlI	CCTC	4 cut(s)	64, 100, 222, 476
MseI	TTAA	3 cut(s)	264, 368, 470
MunI	CAATTG	3 cut(s)	90, 429, 527
MwoI	GCNNNNNNNGC	2 cut(s)	486, 507
NdeII	GATC	2 cut(s)	244, 403
NlaIII	CATG	3 cut(s)	65, 428, 602
NspI	RCATGY	2 cut(s)	428, 602
PaeI	GCATGC	1 cut(s)	428
PaeR7I	CTCGAG	1 cut(s)	40
PagI	TCATGA	1 cut(s)	61
PciI	ACATGT	1 cut(s)	598
PfeI	GAWTC	2 cut(s)	163, 373
PkrI	GCNGC	2 cut(s)	56, 283
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
PscI	ACATGT	1 cut(s)	598
PspFI	CCCAGC	1 cut(s)	133
PspXI	VCTCGAGB	1 cut(s)	40
RsaI	GTAC	2 cut(s)	442, 451
RsaNI	GTAC	2 cut(s)	441, 450
SaqAI	TTAA	3 cut(s)	264, 368, 470
SatI	GCNGC	2 cut(s)	55, 282
Sau3AI	GATC	2 cut(s)	244, 403
SchI	GAGTC	1 cut(s)	138
SfaNI	GCATC	2 cut(s)	199, 278
SfcI	CTRYAG	3 cut(s)	13, 490, 562
Sfr274I	CTCGAG	1 cut(s)	40
SlaI	CTCGAG	1 cut(s)	40
SmlI	CTYRAG	3 cut(s)	34, 40, 216
SmoI	CTYRAG	3 cut(s)	34, 40, 216
SphI	GCATGC	1 cut(s)	428
Sse9I	AATT	4 cut(s)	90, 429, 503, 527
SsiI	CCGC	2 cut(s)	167, 273
TaaI	ACNGT	2 cut(s)	317, 454
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	1 cut(s)	41
TasI	AATT	4 cut(s)	90, 429, 503, 527
TfiI	GAWTC	2 cut(s)	163, 373
Tru1I	TTAA	3 cut(s)	264, 368, 470
Tru9I	TTAA	3 cut(s)	264, 368, 470
TseI	GCWGC	2 cut(s)	54, 281
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	428
XagI	CCTNNNNNAGG	1 cut(s)	543
XceI	RCATGY	2 cut(s)	428, 602
XhoI	CTCGAG	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.