Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002298

Physical Location & Seq

Genomic Coordinates Reverse (-)

26994805 .. 27003526

Gene Structure 8722 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G022710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGAATGGAAGCTATAGCAATGCAAATGTGAGCTCAAGCTCGAGTTTGAATAGCAGCTCTCATGATACCGAGGATGACCTGACCATTGCAATTCTGGGGAAAAGACTCTCCCACTTAGATTTGATTCCGCACACTCTCAGGGTGAATGGGGAGATACTTGACGTGAATGATGCTACTCAAGACCATAAGAGGCTTTCAGAAAGAGATCATTCTGAAAAAGAAGTTAAAACTGGCGGACAAATGCAGTCCATTAAACTAGCTAGAATGCCTTTGTACGGTATGGATACAAGAATGTATATATTTAACCAACAACGCGTGTTGTACTTACTTCTGTTGTCTGATCACCATCGAAAATACATGGTCCACATCACACAACAGATTTCCACCAAAAAACTCTTGTCGTTGTCTGAGTTACAATTCAATTCCACAAAACCCACTAGGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

148

Amino Acids

16.88

Weight (kDa)

8.89

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22260 AT3G22260 AT3G22260 AT3G22260 AT3G22260 AT3G22260
fragaria_vesca	FvH4_6g39711 FvH4_6g39711 FvH4_6g39711
malus_domestica	MD09G1137400.v1.1 MD17G1127700.v1.1
prunus_persica	Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.7G037800_v2.0.a1
pyrus_communis	pycom09g05850 pycom17g12000
rosa_chinensis	RchiOBHm_Chr2g0153801 RchiOBHm_Chr5g0025881 RchiOBHm_Chr7g0227291
rosa_laevigata	RLG00000020725
rosa_multiflora	Rmu_sc0011717.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326950
rosa_rugosa	Rorug02G0441900 Rorug02G0442000
rosa_samantha	Rh1DG092300 Rh2AG505900 Rh2CG183800 Rh2DG527900
rosa_wichuraiana	Rw1G019200 Rw2G041510 Rw7G022710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	315
AciI	CCGC	2 cut(s)	128, 234
AfaI	GTAC	2 cut(s)	275, 323
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	2 cut(s)	49, 421
AjiI	CACGTC	1 cut(s)	163
AluBI	AGCT	5 cut(s)	12, 33, 39, 57, 260
AluI	AGCT	5 cut(s)	12, 33, 39, 57, 260
Alw21I	GWGCWC	1 cut(s)	35
Ama87I	CYCGRG	1 cut(s)	40
ApeKI	GCWGC	1 cut(s)	54
AspS9I	GGNCC	2 cut(s)	361, 441
AsuHPI	GGTGA	2 cut(s)	154, 335
AvaI	CYCGRG	1 cut(s)	40
AvaII	GGWCC	2 cut(s)	361, 441
BanII	GRGCYC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	66
BccI	CCATC	1 cut(s)	354
BciVI	GTATCC	1 cut(s)	277
BclI	TGATCA	1 cut(s)	340
BfaI	CTAG	3 cut(s)	257, 261, 438
BfmI	CTRYAG	1 cut(s)	13
BfuI	GTATCC	1 cut(s)	277
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
Bme18I	GGWCC	2 cut(s)	361, 441
BmeT110I	CYCGRG	1 cut(s)	40
BmgBI	CACGTC	1 cut(s)	163
BmgT120I	GGNCC	2 cut(s)	361, 441
BmsI	GCATC	1 cut(s)	160
BpuEI	CTTGAG	2 cut(s)	19, 162
BsaBI	GATNNNNATC	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	235
Bse3DI	GCAATG	2 cut(s)	25, 84
Bse8I	GATNNNNATC	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	79
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMI	GCAATG	2 cut(s)	25, 84
BseMII	CTCAG	2 cut(s)	151, 399
BseNI	ACTGG	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmI	GAATGC	1 cut(s)	270
BsoBI	CYCGRG	1 cut(s)	40
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	2 cut(s)	205, 340
BspACI	CCGC	2 cut(s)	128, 234
BspCNI	CTCAG	2 cut(s)	150, 400
BspFNI	CGCG	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	61
BsrDI	GCAATG	2 cut(s)	25, 84
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	205, 340
Bst4CI	ACNGT	1 cut(s)	278
BstDEI	CTNAG	3 cut(s)	115, 137, 408
BstF5I	GGATG	1 cut(s)	79
BstFNI	CGCG	1 cut(s)	315
BstKTI	GATC	2 cut(s)	208, 343
BstMBI	GATC	2 cut(s)	205, 340
BstSFI	CTRYAG	1 cut(s)	13
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	66
BsuI	GTATCC	1 cut(s)	277
BtrI	CACGTC	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	79
CciI	TCATGA	1 cut(s)	61
Cfr13I	GGNCC	2 cut(s)	361, 441
Csp6I	GTAC	2 cut(s)	274, 322
CviAII	CATG	2 cut(s)	62, 358
CviJI	RGCY	6 cut(s)	12, 33, 39, 57, 193, 260
CviKI_1	RGCY	6 cut(s)	12, 33, 39, 57, 193, 260
CviQI	GTAC	2 cut(s)	274, 322
DdeI	CTNAG	3 cut(s)	115, 137, 408
DpnI	GATC	2 cut(s)	207, 342
DpnII	GATC	2 cut(s)	205, 340
EciI	GGCGGA	1 cut(s)	249
Ecl136II	GAGCTC	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	35
Eco47I	GGWCC	2 cut(s)	361, 441
Eco53kI	GAGCTC	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	33
EcoO109I	RGGNCCY	1 cut(s)	441
EcoT38I	GRGCYC	1 cut(s)	35
FaeI	CATG	2 cut(s)	65, 361
FaiI	YATR	7 cut(s)	15, 63, 186, 281, 297, 299, 359
FatI	CATG	2 cut(s)	61, 357
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	1 cut(s)	55
FokI	GGATG	1 cut(s)	86
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	55
FspBI	CTAG	3 cut(s)	257, 261, 438
GluI	GCNGC	1 cut(s)	55
Hin1II	CATG	2 cut(s)	65, 361
HinfI	GANTC	2 cut(s)	105, 124
HphI	GGTGA	2 cut(s)	154, 335
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	4 cut(s)	199, 214, 340, 409
Hpy188III	TCNNGA	2 cut(s)	62, 179
Hpy8I	GTNNAC	1 cut(s)	364
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	3 cut(s)	23, 89, 244
HpyF3I	CTNAG	3 cut(s)	115, 137, 408
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	65, 361
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	2 cut(s)	205, 340
LpnPI	CCDG	4 cut(s)	80, 92, 124, 216
Lsp1109I	GCAGC	1 cut(s)	66
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	3 cut(s)	257, 261, 438
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	411
MalI	GATC	2 cut(s)	207, 342
MboI	GATC	2 cut(s)	205, 340
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	3 cut(s)	90, 416, 421
MluI	ACGCGT	1 cut(s)	313
MlyI	GAGTC	1 cut(s)	99
MnlI	CCTC	2 cut(s)	64, 183
MseI	TTAA	3 cut(s)	225, 252, 303
Mva1269I	GAATGC	1 cut(s)	270
MvnI	CGCG	1 cut(s)	315
NdeII	GATC	2 cut(s)	205, 340
NlaIII	CATG	2 cut(s)	65, 361
PaeR7I	CTCGAG	1 cut(s)	40
PagI	TCATGA	1 cut(s)	61
PctI	GAATGC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	56
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
PpuMI	RGGWCCY	1 cut(s)	441
Psp124BI	GAGCTC	1 cut(s)	35
Psp5II	RGGWCCY	1 cut(s)	441
PspPI	GGNCC	2 cut(s)	361, 441
PspPPI	RGGWCCY	1 cut(s)	441
PspXI	VCTCGAGB	1 cut(s)	40
RsaI	GTAC	2 cut(s)	275, 323
RsaNI	GTAC	2 cut(s)	274, 322
SacI	GAGCTC	1 cut(s)	35
SaqAI	TTAA	3 cut(s)	225, 252, 303
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	2 cut(s)	205, 340
Sau96I	GGNCC	2 cut(s)	361, 441
SchI	GAGTC	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	8 cut(s)	14, 35, 41, 59, 81, 165, 262, 446
SfaNI	GCATC	1 cut(s)	160
SfcI	CTRYAG	1 cut(s)	13
Sfr274I	CTCGAG	1 cut(s)	40
SinI	GGWCC	2 cut(s)	361, 441
SlaI	CTCGAG	1 cut(s)	40
SmlI	CTYRAG	3 cut(s)	34, 40, 177
SmoI	CTYRAG	3 cut(s)	34, 40, 177
Sse9I	AATT	3 cut(s)	90, 416, 421
SsiI	CCGC	2 cut(s)	128, 234
SspMI	CTAG	3 cut(s)	257, 261, 438
SstI	GAGCTC	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	2 cut(s)	41, 349
TasI	AATT	3 cut(s)	90, 416, 421
TatI	WGTACW	1 cut(s)	321
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	3 cut(s)	225, 252, 303
Tru9I	TTAA	3 cut(s)	225, 252, 303
TseI	GCWGC	1 cut(s)	54
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	2 cut(s)	361, 441
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XhoI	CTCGAG	1 cut(s)	40
XspI	CTAG	3 cut(s)	257, 261, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.