Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002298

Physical Location & Seq

Genomic Coordinates Reverse (-)

4351218 .. 4354253

Gene Structure 3036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g05850.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAATGGAAGCTACAGCAATGCGAGTGCGAGTTCAAGCTCGAGTTTAGATAGCAGCAATCATGATACAGAGGATGATCAAGCCATTGCAACCATCTTGGCAGAAGAGGAAAAGGTCAAAGTTGATCGCAGGCTTGGGAAGAGACTGTCCCACTTAGATTCGATTCCGCACACTCCCCGCGTAAATGGGGAGATACCTGACGTGAATGATGCGACCCAAGACCATGAACGCCTGTCGGCAAGATTGGCAACATATGATTTATCTGAACTGCAGATCGAGGGCGATGGAAATTGTCAGTTTCGAGCAATAGCAGATCAATTGTTTCGGAATCCAGAATACCACAAGCATGTAAGAAAACAGGTGATAAAGCAGCTAAAGCATCACAAAAAACTCTATGAAGCTTACGTCCCGATGAAATACAGACGCTACCTGAGGAAGATGAAAAAAACCGGGGAGTGGGGAGATCGATCTTACACTACAGGCAGCTGCAGATCGATTCGGAGCCAAGATTTGTTTAATCACCTCTTTTCGAGACACTTGCTACATCGAGATTCTTCCAAAAGATGGGAATCCTACCCTAGAGCTTTGGCTGAGCTTTTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

202

Amino Acids

23.34

Weight (kDa)

8.98

Isoelectric Point (pI)

52.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22260 AT3G22260 AT3G22260 AT3G22260 AT3G22260 AT3G22260
fragaria_vesca	FvH4_6g39711 FvH4_6g39711 FvH4_6g39711
malus_domestica	MD09G1137400.v1.1 MD17G1127700.v1.1
prunus_persica	Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.7G037800_v2.0.a1
pyrus_communis	pycom09g05850 pycom17g12000
rosa_chinensis	RchiOBHm_Chr2g0153801 RchiOBHm_Chr5g0025881 RchiOBHm_Chr7g0227291
rosa_laevigata	RLG00000020725
rosa_multiflora	Rmu_sc0011717.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326950
rosa_rugosa	Rorug02G0441900 Rorug02G0442000
rosa_samantha	Rh1DG092300 Rh2AG505900 Rh2CG183800 Rh2DG527900
rosa_wichuraiana	Rw1G019200 Rw2G041510 Rw7G022710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	564
AccII	CGCG	1 cut(s)	180
AciI	CCGC	2 cut(s)	167, 178
AfiI	CCNNNNNNNGG	2 cut(s)	456, 564
AgsI	TTSAA	1 cut(s)	36
AjiI	CACGTC	1 cut(s)	202
AluBI	AGCT	7 cut(s)	12, 39, 373, 401, 486, 584, 595
AluI	AGCT	7 cut(s)	12, 39, 373, 401, 486, 584, 595
Alw26I	GTCTC	2 cut(s)	136, 526
Ama87I	CYCGRG	1 cut(s)	40
ApeKI	GCWGC	4 cut(s)	54, 370, 483, 486
AsuC2I	CCSGG	1 cut(s)	451
AsuHPI	GGTGA	2 cut(s)	373, 512
AvaI	CYCGRG	1 cut(s)	40
AxyI	CCTNAGG	1 cut(s)	431
BbvI	GCAGC	4 cut(s)	66, 382, 473, 495
BccI	CCATC	3 cut(s)	101, 278, 558
BcgI	CGANNNNNNTGC	2 cut(s)	520, 554
BclI	TGATCA	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	451
BcoDI	GTCTC	2 cut(s)	136, 526
BfaI	CTAG	1 cut(s)	579
BfmI	CTRYAG	4 cut(s)	13, 269, 477, 487
BisI	GCNGC	4 cut(s)	55, 371, 484, 487
BlpI	GCTNAGC	1 cut(s)	591
BlsI	GCNGC	4 cut(s)	56, 372, 485, 488
Bme1390I	CCNGG	1 cut(s)	451
BmeT110I	CYCGRG	1 cut(s)	40
BmgBI	CACGTC	1 cut(s)	202
BmiI	GGNNCC	1 cut(s)	503
BmrFI	CCNGG	1 cut(s)	451
BmsI	GCATC	2 cut(s)	199, 388
Bpu1102I	GCTNAGC	1 cut(s)	591
BpuMI	CCSGG	1 cut(s)	451
Bsa29I	ATCGAT	2 cut(s)	466, 494
BsaBI	GATNNNNATC	1 cut(s)	568
BsaJI	CCNNGG	1 cut(s)	450
Bsc4I	CCNNNNNNNGG	2 cut(s)	456, 564
Bse21I	CCTNAGG	1 cut(s)	431
Bse3DI	GCAATG	2 cut(s)	25, 84
Bse8I	GATNNNNATC	1 cut(s)	568
BseCI	ATCGAT	2 cut(s)	466, 494
BseDI	CCNNGG	1 cut(s)	450
BseGI	GGATG	1 cut(s)	79
BseJI	GATNNNNATC	1 cut(s)	568
BseLI	CCNNNNNNNGG	2 cut(s)	456, 564
BseMI	GCAATG	2 cut(s)	25, 84
BseMII	CTCAG	2 cut(s)	422, 582
BseXI	GCAGC	4 cut(s)	66, 382, 473, 495
Bsh1236I	CGCG	1 cut(s)	180
BshVI	ATCGAT	2 cut(s)	466, 494
BsiHKCI	CYCGRG	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	450
BslFI	GGGAC	2 cut(s)	133, 392
BslI	CCNNNNNNNGG	2 cut(s)	456, 564
BsmAI	GTCTC	2 cut(s)	136, 526
BsmFI	GGGAC	2 cut(s)	133, 392
BsoBI	CYCGRG	1 cut(s)	40
Bsp143I	GATC	7 cut(s)	76, 124, 273, 313, 463, 467, 491
Bsp1720I	GCTNAGC	1 cut(s)	591
BspACI	CCGC	2 cut(s)	167, 178
BspCNI	CTCAG	2 cut(s)	423, 583
BspDI	ATCGAT	2 cut(s)	466, 494
BspFNI	CGCG	1 cut(s)	180
BspHI	TCATGA	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	503
BspMAI	CTGCAG	2 cut(s)	273, 491
BsrDI	GCAATG	2 cut(s)	25, 84
BssECI	CCNNGG	1 cut(s)	450
BssMI	GATC	7 cut(s)	76, 124, 273, 313, 463, 467, 491
Bst4CI	ACNGT	1 cut(s)	147
Bst6I	CTCTTC	2 cut(s)	99, 134
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	3 cut(s)	154, 431, 591
BstF5I	GGATG	1 cut(s)	79
BstFNI	CGCG	1 cut(s)	180
BstKTI	GATC	7 cut(s)	79, 127, 276, 316, 466, 470, 494
BstMAI	GTCTC	2 cut(s)	136, 526
BstMBI	GATC	7 cut(s)	76, 124, 273, 313, 463, 467, 491
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 376
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	449
BstSFI	CTRYAG	4 cut(s)	13, 269, 477, 487
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	4 cut(s)	66, 382, 473, 495
Bsu15I	ATCGAT	2 cut(s)	466, 494
Bsu36I	CCTNAGG	1 cut(s)	431
BsuTUI	ATCGAT	2 cut(s)	466, 494
BtgZI	GCGATG	1 cut(s)	297
BtrI	CACGTC	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	131
CciI	TCATGA	1 cut(s)	61
ClaI	ATCGAT	2 cut(s)	466, 494
CseI	GACGC	1 cut(s)	432
CviAII	CATG	3 cut(s)	62, 224, 347
DdeI	CTNAG	3 cut(s)	154, 431, 591
DpnI	GATC	7 cut(s)	78, 126, 275, 315, 465, 469, 493
DpnII	GATC	7 cut(s)	76, 124, 273, 313, 463, 467, 491
Eam1104I	CTCTTC	2 cut(s)	99, 134
EarI	CTCTTC	2 cut(s)	99, 134
Eco81I	CCTNAGG	1 cut(s)	431
Eco88I	CYCGRG	1 cut(s)	40
FaeI	CATG	3 cut(s)	65, 227, 350
FaiI	YATR	6 cut(s)	63, 225, 253, 255, 348, 396
FaqI	GGGAC	2 cut(s)	133, 392
FatI	CATG	3 cut(s)	61, 223, 346
FauI	CCCGC	1 cut(s)	185
FauNDI	CATATG	1 cut(s)	253
FbaI	TGATCA	1 cut(s)	76
Fnu4HI	GCNGC	4 cut(s)	55, 371, 484, 487
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	4 cut(s)	55, 371, 484, 487
FspBI	CTAG	1 cut(s)	579
GluI	GCNGC	4 cut(s)	55, 371, 484, 487
HapII	CCGG	1 cut(s)	450
HgaI	GACGC	1 cut(s)	432
Hin1II	CATG	3 cut(s)	65, 227, 350
HindIII	AAGCTT	1 cut(s)	399
HinfI	GANTC	6 cut(s)	158, 163, 328, 496, 551, 569
HpaII	CCGG	1 cut(s)	450
HphI	GGTGA	2 cut(s)	373, 512
Hpy188I	TCNGA	3 cut(s)	265, 327, 501
Hpy188III	TCNNGA	5 cut(s)	62, 332, 409, 531, 548
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4IV	ACGT	2 cut(s)	201, 405
HpyCH4V	TGCA	3 cut(s)	89, 271, 489
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 376
HpyF3I	CTNAG	3 cut(s)	154, 431, 591
HpySE526I	ACGT	2 cut(s)	201, 405
Hsp92II	CATG	3 cut(s)	65, 227, 350
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	7 cut(s)	76, 124, 273, 313, 463, 467, 491
LmnI	GCTCC	1 cut(s)	501
LpnPI	CCDG	8 cut(s)	115, 210, 245, 344, 345, 443, 463, 465
Lsp1109I	GCAGC	4 cut(s)	66, 382, 473, 495
LweI	GCATC	2 cut(s)	199, 388
MaeI	CTAG	1 cut(s)	579
MaeII	ACGT	2 cut(s)	201, 405
MalI	GATC	7 cut(s)	78, 126, 275, 315, 465, 469, 493
MboI	GATC	7 cut(s)	76, 124, 273, 313, 463, 467, 491
MboII	GAAGA	4 cut(s)	116, 151, 448, 546
MfeI	CAATTG	1 cut(s)	317
MluCI	AATT	2 cut(s)	289, 317
MnlI	CCTC	5 cut(s)	64, 100, 271, 426, 533
MseI	TTAA	1 cut(s)	516
MslI	CAYNNNNRTG	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	486
MspI	CCGG	1 cut(s)	450
MspR9I	CCNGG	1 cut(s)	451
MunI	CAATTG	1 cut(s)	317
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	2 cut(s)	245, 376
NciI	CCSGG	1 cut(s)	451
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	7 cut(s)	76, 124, 273, 313, 463, 467, 491
NlaIII	CATG	3 cut(s)	65, 227, 350
NlaIV	GGNNCC	1 cut(s)	503
NspI	RCATGY	1 cut(s)	350
PaeR7I	CTCGAG	1 cut(s)	40
PagI	TCATGA	1 cut(s)	61
PfeI	GAWTC	6 cut(s)	158, 163, 328, 496, 551, 569
PflMI	CCANNNNNTGG	1 cut(s)	564
PkrI	GCNGC	4 cut(s)	56, 372, 485, 488
PspN4I	GGNNCC	1 cut(s)	503
PspXI	VCTCGAGB	1 cut(s)	40
PstI	CTGCAG	2 cut(s)	273, 491
PvuII	CAGCTG	1 cut(s)	486
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	4 cut(s)	55, 371, 484, 487
Sau3AI	GATC	7 cut(s)	76, 124, 273, 313, 463, 467, 491
ScrFI	CCNGG	1 cut(s)	451
SfaNI	GCATC	2 cut(s)	199, 388
SfcI	CTRYAG	4 cut(s)	13, 269, 477, 487
Sfr274I	CTCGAG	1 cut(s)	40
SlaI	CTCGAG	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
Sse9I	AATT	2 cut(s)	289, 317
SsiI	CCGC	2 cut(s)	167, 178
SspMI	CTAG	1 cut(s)	579
StyD4I	CCNGG	1 cut(s)	449
TaaI	ACNGT	1 cut(s)	147
TaiI	ACGT	2 cut(s)	204, 408
TaqI	TCGA	8 cut(s)	41, 161, 276, 301, 466, 494, 530, 547
TasI	AATT	2 cut(s)	289, 317
TfiI	GAWTC	6 cut(s)	158, 163, 328, 496, 551, 569
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TseI	GCWGC	4 cut(s)	54, 370, 483, 486
TspDTI	ATGAA	5 cut(s)	17, 240, 411, 428, 455
Van91I	CCANNNNNTGG	1 cut(s)	564
XceI	RCATGY	1 cut(s)	350
XhoI	CTCGAG	1 cut(s)	40
XspI	CTAG	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.