Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002298

Physical Location & Seq

Genomic Coordinates Reverse (-)

56764037 .. 56764680

Gene Structure 644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0442000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCTCAAAATCGTGAGCTCGATCAGCAAACCCGTCCTCTAGCAAACCCAGATCGCCGGATTTTAAGTAACCGGATCTCCCTCCGTCGCCGGAAGCTCCCAATGGCCCGCCTCGGAGGCAAGAAGCCGCCACGAGGCGTCATGCTAGTTAGGATGTTCAGAAAAATCAGACTGAGGTGGCTGAAGCTGAAGTACTTCTGCATGTTGAAGAAGCTCAAGGAGTCTTACAAGAACATGGTGAAGGATCTCATGGAAGCCGGAGCGAGCTTTGAAACGTTTCAGCAGAATATATTCATGGAGACCACGTTTGCAATTCCGATGGGAGTTTCTCTTTCTAGCCACCCCTCTATCCCCGGATCGGATAGGCCCAGAACCCTTTACATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

128

Amino Acids

15.04

Weight (kDa)

11.3

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22260 AT3G22260 AT3G22260 AT3G22260 AT3G22260 AT3G22260
fragaria_vesca	FvH4_6g39711 FvH4_6g39711 FvH4_6g39711
malus_domestica	MD09G1137400.v1.1 MD17G1127700.v1.1
prunus_persica	Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.7G037800_v2.0.a1
pyrus_communis	pycom09g05850 pycom17g12000
rosa_chinensis	RchiOBHm_Chr2g0153801 RchiOBHm_Chr5g0025881 RchiOBHm_Chr7g0227291
rosa_laevigata	RLG00000020725
rosa_multiflora	Rmu_sc0011717.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326950
rosa_rugosa	Rorug02G0441900 Rorug02G0442000
rosa_samantha	Rh1DG092300 Rh2AG505900 Rh2CG183800 Rh2DG527900
rosa_wichuraiana	Rw1G019200 Rw2G041510 Rw7G022710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	109, 128
AclI	AACGTT	1 cut(s)	275
AclWI	GGATC	3 cut(s)	83, 252, 364
AcuI	CTGAAG	2 cut(s)	203, 209
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	2 cut(s)	134, 358
AgsI	TTSAA	2 cut(s)	208, 272
AluBI	AGCT	5 cut(s)	19, 97, 187, 214, 267
AluI	AGCT	5 cut(s)	19, 97, 187, 214, 267
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	3 cut(s)	83, 252, 364
AoxI	GGCC	2 cut(s)	105, 365
Asp700I	GAANNNNTTC	3 cut(s)	194, 276, 290
AspS9I	GGNCC	2 cut(s)	106, 366
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	21
BarI	GAAGNNNNNNTAC	2 cut(s)	176, 208
BauI	CACGAG	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	21
BccI	CCATC	1 cut(s)	313
BcnI	CCSGG	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	4 cut(s)	41, 146, 336, 385
BglI	GCCNNNNNGGC	1 cut(s)	117
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
BmcAI	AGTACT	1 cut(s)	194
Bme1390I	CCNGG	1 cut(s)	354
BmgT120I	GGNCC	2 cut(s)	106, 366
BmrFI	CCNGG	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	112, 352
BsaWI	WCCGGW	1 cut(s)	72
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 290, 320
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 358
BseDI	CCNNGG	2 cut(s)	112, 352
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	2 cut(s)	134, 358
BseMII	CTCAG	1 cut(s)	164
BshFI	GGCC	2 cut(s)	107, 367
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	5 cut(s)	58, 73, 91, 258, 354
BslI	CCNNNNNNNGG	2 cut(s)	134, 358
BsmAI	GTCTC	1 cut(s)	293
BsnI	GGCC	2 cut(s)	107, 367
Bso31I	GGTCTC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	5 cut(s)	22, 52, 75, 244, 356
BspACI	CCGC	2 cut(s)	109, 128
BspANI	GGCC	2 cut(s)	107, 367
BspCNI	CTCAG	1 cut(s)	165
BspPI	GGATC	3 cut(s)	83, 252, 364
BspTNI	GGTCTC	1 cut(s)	293
BssECI	CCNNGG	2 cut(s)	112, 352
BssMI	GATC	5 cut(s)	22, 52, 75, 244, 356
BssNI	GRCGYC	1 cut(s)	138
BssSI	CACGAG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	132
BstACI	GRCGYC	1 cut(s)	138
BstC8I	GCNNGC	2 cut(s)	109, 265
BstDEI	CTNAG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	159
BstKTI	GATC	5 cut(s)	25, 55, 78, 247, 359
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	5 cut(s)	22, 52, 75, 244, 356
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 117
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	352
BstX2I	RGATCY	2 cut(s)	75, 244
BstYI	RGATCY	2 cut(s)	75, 244
BsuRI	GGCC	2 cut(s)	107, 367
BtsCI	GGATG	1 cut(s)	159
Cac8I	GCNNGC	2 cut(s)	109, 265
Cfr13I	GGNCC	2 cut(s)	106, 366
CseI	GACGC	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	5 cut(s)	142, 202, 235, 250, 295
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	1 cut(s)	173
DpnI	GATC	5 cut(s)	24, 54, 77, 246, 358
DpnII	GATC	5 cut(s)	22, 52, 75, 244, 356
Ecl136II	GAGCTC	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	293
Eco53kI	GAGCTC	1 cut(s)	19
Eco57I	CTGAAG	2 cut(s)	203, 209
EcoICRI	GAGCTC	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	5 cut(s)	145, 205, 238, 253, 298
FaiI	YATR	6 cut(s)	143, 203, 236, 251, 290, 296
FatI	CATG	5 cut(s)	141, 201, 234, 249, 294
FauI	CCCGC	1 cut(s)	116
Fnu4HI	GCNGC	1 cut(s)	128
FokI	GGATG	1 cut(s)	166
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	128
FspBI	CTAG	4 cut(s)	41, 146, 336, 385
GluI	GCNGC	1 cut(s)	128
HaeIII	GGCC	2 cut(s)	107, 367
HapII	CCGG	5 cut(s)	58, 73, 91, 258, 354
HgaI	GACGC	1 cut(s)	127
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	5 cut(s)	145, 205, 238, 253, 298
HinfI	GANTC	1 cut(s)	221
HpaII	CCGG	5 cut(s)	58, 73, 91, 258, 354
HphI	GGTGA	1 cut(s)	250
Hpy188I	TCNGA	5 cut(s)	116, 161, 170, 318, 361
Hpy188III	TCNNGA	1 cut(s)	14
Hpy99I	CGWCG	1 cut(s)	90
HpyAV	CCTTC	1 cut(s)	235
HpyCH4IV	ACGT	2 cut(s)	275, 305
HpyCH4V	TGCA	2 cut(s)	201, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 117
HpyF3I	CTNAG	1 cut(s)	173
HpySE526I	ACGT	2 cut(s)	275, 305
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	5 cut(s)	145, 205, 238, 253, 298
Kzo9I	GATC	5 cut(s)	22, 52, 75, 244, 356
LmnI	GCTCC	2 cut(s)	102, 260
LpnPI	CCDG	7 cut(s)	63, 71, 86, 104, 271, 367, 382
MaeI	CTAG	4 cut(s)	41, 146, 336, 385
MaeII	ACGT	2 cut(s)	275, 305
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	5 cut(s)	24, 54, 77, 246, 358
MboI	GATC	5 cut(s)	22, 52, 75, 244, 356
MboII	GAAGA	1 cut(s)	220
MflI	RGATCY	2 cut(s)	75, 244
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	1 cut(s)	312
MlyI	GAGTC	1 cut(s)	230
MnlI	CCTC	7 cut(s)	48, 92, 110, 122, 128, 168, 355
MroXI	GAANNNNTTC	3 cut(s)	194, 276, 290
MseI	TTAA	1 cut(s)	65
MspI	CCGG	5 cut(s)	58, 73, 91, 258, 354
MspR9I	CCNGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	2 cut(s)	25, 117
NciI	CCSGG	1 cut(s)	354
NdeII	GATC	5 cut(s)	22, 52, 75, 244, 356
NlaIII	CATG	5 cut(s)	145, 205, 238, 253, 298
NspI	RCATGY	1 cut(s)	205
PdmI	GAANNNNTTC	3 cut(s)	194, 276, 290
PkrI	GCNGC	1 cut(s)	129
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
Psp124BI	GAGCTC	1 cut(s)	21
Psp1406I	AACGTT	1 cut(s)	275
PspPI	GGNCC	2 cut(s)	106, 366
PsuI	RGATCY	2 cut(s)	75, 244
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
SacI	GAGCTC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	5 cut(s)	22, 52, 75, 244, 356
Sau96I	GGNCC	2 cut(s)	106, 366
ScaI	AGTACT	1 cut(s)	194
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	354
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	8 cut(s)	21, 99, 179, 189, 216, 269, 278, 308
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	1 cut(s)	312
SsiI	CCGC	2 cut(s)	109, 128
SspMI	CTAG	4 cut(s)	41, 146, 336, 385
SstI	GAGCTC	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	352
TaiI	ACGT	2 cut(s)	278, 308
TaqI	TCGA	1 cut(s)	21
TasI	AATT	1 cut(s)	312
TatI	WGTACW	1 cut(s)	192
TauI	GCSGC	1 cut(s)	130
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TspDTI	ATGAA	1 cut(s)	283
TspGWI	ACGGA	1 cut(s)	74
XceI	RCATGY	1 cut(s)	205
XmnI	GAANNNNTTC	3 cut(s)	194, 276, 290
XspI	CTAG	4 cut(s)	41, 146, 336, 385
ZrmI	AGTACT	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.