Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002298

Physical Location & Seq

Genomic Coordinates Forward (+)

67550968 .. 67552979

Gene Structure 2012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G041510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAATGGAAGCTATAGCAATGCAAGTGCGAGCTCAAGCTCGAGTTTGAATAGCAGCTCTCATGATACCGAGGATGACCTGACCATTGCAACTGTCTTGGCAGAAGAGGAAAAGCAGAAAAGTGATGGCAGGCTGGGGAAAAGACTCTCCCACTTAGATTCGATTCCGCACACTCCCAGGGTGAATGGGGAGATACCTGACGTGAATGATGCTACTCAGGACCATAAGAGGCTTTCAGAAAGGCTGGCTACCTATGATCTATCTGAGCTGCAAATTGAGGGTGATGGAAATTGCCAGTTTCGAGCAATAGCTGATCAGTTGTTTCGCAATCCGGATTACCATAAGCATGTTAGAAAGCAGGTTATAAAGCAGGTATGGCTGATCAAATGGATCTACTTCATTCCTTATGTTATTTCTGTTCAACCTTTGTGTTATATTGGGATAGTAAAACTTCCAAAGCTTTGGCTGAGCTTTTGGAGTGAAGTGCATTACAACTCACTATATGCTACTGCAGATGTTCCCACAAGAAGTCCCAGAAAGAAGCATTGGCTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

185

Amino Acids

21.23

Weight (kDa)

7.09

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22260 AT3G22260 AT3G22260 AT3G22260 AT3G22260 AT3G22260
fragaria_vesca	FvH4_6g39711 FvH4_6g39711 FvH4_6g39711
malus_domestica	MD09G1137400.v1.1 MD17G1127700.v1.1
prunus_persica	Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.7G037800_v2.0.a1
pyrus_communis	pycom09g05850 pycom17g12000
rosa_chinensis	RchiOBHm_Chr2g0153801 RchiOBHm_Chr5g0025881 RchiOBHm_Chr7g0227291
rosa_laevigata	RLG00000020725
rosa_multiflora	Rmu_sc0011717.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326950
rosa_rugosa	Rorug02G0441900 Rorug02G0442000
rosa_samantha	Rh1DG092300 Rh2AG505900 Rh2CG183800 Rh2DG527900
rosa_wichuraiana	Rw1G019200 Rw2G041510 Rw7G022710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	365
Acc36I	ACCTGC	2 cut(s)	349, 361
AccIII	TCCGGA	1 cut(s)	331
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	1 cut(s)	398
AgsI	TTSAA	2 cut(s)	49, 422
AjiI	CACGTC	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	176
AjuI	GAANNNNNNNTTGG	1 cut(s)	529
AluBI	AGCT	8 cut(s)	12, 33, 39, 57, 268, 311, 460, 471
AluI	AGCT	8 cut(s)	12, 33, 39, 57, 268, 311, 460, 471
Alw21I	GWGCWC	1 cut(s)	35
AlwI	GGATC	1 cut(s)	398
Ama87I	CYCGRG	1 cut(s)	40
Aor13HI	TCCGGA	1 cut(s)	331
ApeKI	GCWGC	2 cut(s)	54, 268
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	193, 293
AvaI	CYCGRG	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	66, 255
BccI	CCATC	2 cut(s)	119, 278
BciT130I	CCWGG	1 cut(s)	178
BclI	TGATCA	2 cut(s)	313, 381
BfaI	CTAG	1 cut(s)	556
BfmI	CTRYAG	2 cut(s)	13, 510
BfuAI	ACCTGC	2 cut(s)	349, 361
BisI	GCNGC	2 cut(s)	55, 269
BlpI	GCTNAGC	1 cut(s)	467
BlsI	GCNGC	2 cut(s)	56, 270
Bme1390I	CCNGG	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	220
BmeT110I	CYCGRG	1 cut(s)	40
BmgBI	CACGTC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	178
BmsI	GCATC	1 cut(s)	199
Bpu1102I	GCTNAGC	1 cut(s)	467
BpuEI	CTTGAG	1 cut(s)	19
BsaJI	CCNNGG	3 cut(s)	69, 176, 177
BsaWI	WCCGGW	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	295
Bse3DI	GCAATG	2 cut(s)	25, 84
BseAI	TCCGGA	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	178
BseDI	CCNNGG	3 cut(s)	69, 176, 177
BseGI	GGATG	1 cut(s)	79
BseMI	GCAATG	2 cut(s)	25, 84
BseMII	CTCAG	3 cut(s)	230, 255, 458
BseNI	ACTGG	1 cut(s)	295
BseXI	GCAGC	2 cut(s)	66, 255
BseYI	CCCAGC	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	332
BslFI	GGGAC	1 cut(s)	516
BsmFI	GGGAC	1 cut(s)	516
BsoBI	CYCGRG	1 cut(s)	40
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp13I	TCCGGA	1 cut(s)	331
Bsp143I	GATC	4 cut(s)	256, 313, 381, 390
Bsp1720I	GCTNAGC	1 cut(s)	467
BspACI	CCGC	1 cut(s)	167
BspCNI	CTCAG	3 cut(s)	229, 256, 459
BspEI	TCCGGA	1 cut(s)	331
BspHI	TCATGA	1 cut(s)	61
BspMAI	CTGCAG	1 cut(s)	514
BspMI	ACCTGC	2 cut(s)	349, 361
BspPI	GGATC	1 cut(s)	398
BsrDI	GCAATG	2 cut(s)	25, 84
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	3 cut(s)	69, 176, 177
BssMI	GATC	4 cut(s)	256, 313, 381, 390
Bst2UI	CCWGG	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	94
Bst6I	CTCTTC	1 cut(s)	99
BstC8I	GCNNGC	3 cut(s)	31, 131, 246
BstDEI	CTNAG	4 cut(s)	154, 216, 264, 467
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	4 cut(s)	259, 316, 384, 393
BstMBI	GATC	4 cut(s)	256, 313, 381, 390
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstNI	CCWGG	1 cut(s)	178
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	176
BstSFI	CTRYAG	2 cut(s)	13, 510
BstV1I	GCAGC	2 cut(s)	66, 255
BstX2I	RGATCY	1 cut(s)	390
BstXI	CCANNNNNNTGG	1 cut(s)	462
BstYI	RGATCY	1 cut(s)	390
BtrI	CACGTC	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	79
BveI	ACCTGC	2 cut(s)	349, 361
Cac8I	GCNNGC	3 cut(s)	31, 131, 246
CciI	TCATGA	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	220
CviAII	CATG	2 cut(s)	62, 347
DdeI	CTNAG	4 cut(s)	154, 216, 264, 467
DpnI	GATC	4 cut(s)	258, 315, 383, 392
DpnII	GATC	4 cut(s)	256, 313, 381, 390
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	220
Eco53kI	GAGCTC	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	35
FaeI	CATG	2 cut(s)	65, 350
FaqI	GGGAC	1 cut(s)	516
FatI	CATG	2 cut(s)	61, 346
FbaI	TGATCA	2 cut(s)	313, 381
Fnu4HI	GCNGC	2 cut(s)	55, 269
FokI	GGATG	1 cut(s)	86
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	2 cut(s)	55, 269
FspBI	CTAG	1 cut(s)	556
GluI	GCNGC	2 cut(s)	55, 269
GsaI	CCCAGC	1 cut(s)	137
HapII	CCGG	1 cut(s)	332
Hin1II	CATG	2 cut(s)	65, 350
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	3 cut(s)	144, 158, 163
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	2 cut(s)	193, 293
Hpy188I	TCNGA	2 cut(s)	238, 265
Hpy188III	TCNNGA	3 cut(s)	62, 218, 332
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	5 cut(s)	23, 89, 271, 487, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpyF3I	CTNAG	4 cut(s)	154, 216, 264, 467
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	65, 350
Kpn2I	TCCGGA	1 cut(s)	331
Ksp22I	TGATCA	2 cut(s)	313, 381
Kzo9I	GATC	4 cut(s)	256, 313, 381, 390
Lsp1109I	GCAGC	2 cut(s)	66, 255
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	556
MaeII	ACGT	1 cut(s)	201
MalI	GATC	4 cut(s)	258, 315, 383, 392
MboI	GATC	4 cut(s)	256, 313, 381, 390
MboII	GAAGA	1 cut(s)	116
MflI	RGATCY	1 cut(s)	390
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	2 cut(s)	273, 289
MlyI	GAGTC	1 cut(s)	138
MnlI	CCTC	4 cut(s)	64, 100, 222, 271
MroI	TCCGGA	1 cut(s)	331
MslI	CAYNNNNRTG	1 cut(s)	345
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	178
MwoI	GCNNNNNNNGC	1 cut(s)	376
NdeII	GATC	4 cut(s)	256, 313, 381, 390
NlaIII	CATG	2 cut(s)	65, 350
NspI	RCATGY	1 cut(s)	350
PaeR7I	CTCGAG	1 cut(s)	40
PagI	TCATGA	1 cut(s)	61
PasI	CCCWGGG	1 cut(s)	177
PfeI	GAWTC	2 cut(s)	158, 163
PkrI	GCNGC	2 cut(s)	56, 270
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
PsiI	TTATAA	1 cut(s)	365
Psp124BI	GAGCTC	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	176
PspFI	CCCAGC	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	220
PspXI	VCTCGAGB	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	390
RseI	CAYNNNNRTG	1 cut(s)	345
SacI	GAGCTC	1 cut(s)	35
SatI	GCNGC	2 cut(s)	55, 269
Sau3AI	GATC	4 cut(s)	256, 313, 381, 390
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	138
ScrFI	CCNGG	1 cut(s)	178
SduI	GDGCHC	1 cut(s)	35
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	2 cut(s)	13, 510
Sfr274I	CTCGAG	1 cut(s)	40
SinI	GGWCC	1 cut(s)	220
SlaI	CTCGAG	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	2 cut(s)	34, 40
SmoI	CTYRAG	2 cut(s)	34, 40
Sse9I	AATT	2 cut(s)	273, 289
SsiI	CCGC	1 cut(s)	167
SspMI	CTAG	1 cut(s)	556
SstI	GAGCTC	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	176
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	3 cut(s)	41, 161, 301
TasI	AATT	2 cut(s)	273, 289
TfiI	GAWTC	2 cut(s)	158, 163
TseI	GCWGC	2 cut(s)	54, 268
TspDTI	ATGAA	2 cut(s)	17, 388
VpaK11BI	GGWCC	1 cut(s)	220
XceI	RCATGY	1 cut(s)	350
XhoI	CTCGAG	1 cut(s)	40
XspI	CTAG	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.