Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002298

Physical Location & Seq

Genomic Coordinates Reverse (-)

9783304 .. 9786442

Gene Structure 3139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g12000.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAACGGAAACTACAGCAATGCAAGTGCGAGTTCCAGCTCGAGTTTAGATAGCAGCACTCACGGTACGGAGGATGATCAAACCATTGCAGTCATCTTGGGAGAAGAGGAAAAGCTGAAATTTGATGGCACGCTTGGGAAAAGACTGTGCCACTTAAATTCGATTCCTCACACTCCCCGGGTAAATGGGGAGATACCTGATGTGAATGATGCAACCCAAGACCATGAGCGCCTGTCAGCAAGGCTGGCAACATATGATTTATCTGAACTGCAGATCAAGGGCGATGGAAACTGTCAGTTTCGAGCAGTAGCAGATCAATTGTTTCGGAATCCAGAATACCACAAGCATGTAAGAAAACAGGTGATAAAGCAGTTAGAGCATCACAAAAAACTCTACGAAGCTTATGTCCCAATGAAGTACGGACACTACCTGAGGAAGATGAAAAAAACCGGGGAGTGGGGAGATCATCTTACACTACAGGCAGCTGCAGATCGATTCGGAGCCAAGATTTGTCTAATCACCTCTTTTCGGGACACTTGCTACATCGAGATTCTTCCTAAAGATGGGAATCCTACGCGAGAGCTTTGGCTGAGCTTTTGGAGTGAAGTGCATTATAACTCCTTGTATGCAAGTGCAGATGTTCCGTCAAGAACTCCCCGAAAGAAGCATTGGCTGTCATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

228

Amino Acids

25.95

Weight (kDa)

7.75

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22260 AT3G22260 AT3G22260 AT3G22260 AT3G22260 AT3G22260
fragaria_vesca	FvH4_6g39711 FvH4_6g39711 FvH4_6g39711
malus_domestica	MD09G1137400.v1.1 MD17G1127700.v1.1
prunus_persica	Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.7G037800_v2.0.a1
pyrus_communis	pycom09g05850 pycom17g12000
rosa_chinensis	RchiOBHm_Chr2g0153801 RchiOBHm_Chr5g0025881 RchiOBHm_Chr7g0227291
rosa_laevigata	RLG00000020725
rosa_multiflora	Rmu_sc0011717.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326950
rosa_rugosa	Rorug02G0441900 Rorug02G0442000
rosa_samantha	Rh1DG092300 Rh2AG505900 Rh2CG183800 Rh2DG527900
rosa_wichuraiana	Rw1G019200 Rw2G041510 Rw7G022710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
AccII	CGCG	1 cut(s)	577
AcsI	RAATTY	2 cut(s)	119, 157
AfaI	GTAC	2 cut(s)	67, 419
AfiI	CCNNNNNNNGG	3 cut(s)	456, 528, 563
AjuI	GAANNNNNNNTTGG	2 cut(s)	652, 684
AluBI	AGCT	6 cut(s)	39, 115, 401, 485, 583, 594
AluI	AGCT	6 cut(s)	39, 115, 401, 485, 583, 594
Ama87I	CYCGRG	2 cut(s)	40, 177
ApeKI	GCWGC	3 cut(s)	54, 482, 485
ApoI	RAATTY	2 cut(s)	119, 157
ArsI	GACNNNNNNTTYG	2 cut(s)	390, 422
AspLEI	GCGC	1 cut(s)	231
AsuC2I	CCSGG	3 cut(s)	178, 179, 451
AsuHPI	GGTGA	2 cut(s)	373, 511
AvaI	CYCGRG	2 cut(s)	40, 177
AxyI	CCTNAGG	1 cut(s)	431
BbvI	GCAGC	3 cut(s)	66, 472, 494
BccI	CCATC	3 cut(s)	119, 278, 557
BclI	TGATCA	1 cut(s)	76
BcnI	CCSGG	3 cut(s)	178, 179, 451
BfaI	CTAG	1 cut(s)	682
BfmI	CTRYAG	4 cut(s)	13, 269, 476, 486
BfoI	RGCGCY	1 cut(s)	232
BisI	GCNGC	3 cut(s)	55, 483, 486
BlpI	GCTNAGC	1 cut(s)	590
BlsI	GCNGC	3 cut(s)	56, 484, 487
Bme1390I	CCNGG	3 cut(s)	178, 179, 451
BmeT110I	CYCGRG	2 cut(s)	40, 177
BmiI	GGNNCC	1 cut(s)	502
BmrFI	CCNGG	3 cut(s)	178, 179, 451
BmsI	GCATC	2 cut(s)	199, 388
Bpu1102I	GCTNAGC	1 cut(s)	590
BpuMI	CCSGG	3 cut(s)	178, 179, 451
Bsa29I	ATCGAT	1 cut(s)	493
BsaBI	GATNNNNATC	1 cut(s)	567
BsaJI	CCNNGG	3 cut(s)	176, 177, 450
Bsc4I	CCNNNNNNNGG	3 cut(s)	456, 528, 563
Bse21I	CCTNAGG	1 cut(s)	431
Bse3DI	GCAATG	2 cut(s)	25, 84
Bse8I	GATNNNNATC	1 cut(s)	567
BseCI	ATCGAT	1 cut(s)	493
BseDI	CCNNGG	3 cut(s)	176, 177, 450
BseGI	GGATG	1 cut(s)	79
BseJI	GATNNNNATC	1 cut(s)	567
BseLI	CCNNNNNNNGG	3 cut(s)	456, 528, 563
BseMI	GCAATG	2 cut(s)	25, 84
BseMII	CTCAG	2 cut(s)	422, 581
BseXI	GCAGC	3 cut(s)	66, 472, 494
BsgI	GTGCAG	1 cut(s)	654
Bsh1236I	CGCG	1 cut(s)	577
BshVI	ATCGAT	1 cut(s)	493
BsiHKCI	CYCGRG	2 cut(s)	40, 177
BsiSI	CCGG	2 cut(s)	178, 450
BslFI	GGGAC	2 cut(s)	392, 545
BslI	CCNNNNNNNGG	3 cut(s)	456, 528, 563
BsmFI	GGGAC	2 cut(s)	392, 545
BsoBI	CYCGRG	2 cut(s)	40, 177
Bsp143I	GATC	5 cut(s)	76, 273, 313, 463, 490
Bsp1720I	GCTNAGC	1 cut(s)	590
BspCNI	CTCAG	2 cut(s)	423, 582
BspDI	ATCGAT	1 cut(s)	493
BspFNI	CGCG	1 cut(s)	577
BspLI	GGNNCC	1 cut(s)	502
BspMAI	CTGCAG	2 cut(s)	273, 490
BsrDI	GCAATG	2 cut(s)	25, 84
BssECI	CCNNGG	3 cut(s)	176, 177, 450
BssMI	GATC	5 cut(s)	76, 273, 313, 463, 490
Bst4CI	ACNGT	3 cut(s)	65, 147, 293
Bst6I	CTCTTC	1 cut(s)	99
BstC8I	GCNNGC	2 cut(s)	131, 246
BstDEI	CTNAG	2 cut(s)	431, 590
BstF5I	GGATG	1 cut(s)	79
BstFNI	CGCG	1 cut(s)	577
BstH2I	RGCGCY	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	5 cut(s)	79, 276, 316, 466, 493
BstMBI	GATC	5 cut(s)	76, 273, 313, 463, 490
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 376
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	3 cut(s)	176, 177, 449
BstSFI	CTRYAG	4 cut(s)	13, 269, 476, 486
BstUI	CGCG	1 cut(s)	577
BstV1I	GCAGC	3 cut(s)	66, 472, 494
Bsu15I	ATCGAT	1 cut(s)	493
Bsu36I	CCTNAGG	1 cut(s)	431
BsuTUI	ATCGAT	1 cut(s)	493
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	79
Cac8I	GCNNGC	2 cut(s)	131, 246
CfoI	GCGC	1 cut(s)	231
Cfr9I	CCCGGG	1 cut(s)	177
ClaI	ATCGAT	1 cut(s)	493
Csp6I	GTAC	2 cut(s)	66, 418
CviAII	CATG	2 cut(s)	224, 347
CviQI	GTAC	2 cut(s)	66, 418
DdeI	CTNAG	2 cut(s)	431, 590
DpnI	GATC	5 cut(s)	78, 275, 315, 465, 492
DpnII	GATC	5 cut(s)	76, 273, 313, 463, 490
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Eco81I	CCTNAGG	1 cut(s)	431
Eco88I	CYCGRG	2 cut(s)	40, 177
FaeI	CATG	2 cut(s)	227, 350
FaiI	YATR	7 cut(s)	225, 253, 255, 348, 405, 615, 627
FaqI	GGGAC	2 cut(s)	392, 545
FatI	CATG	2 cut(s)	223, 346
FauNDI	CATATG	1 cut(s)	253
FbaI	TGATCA	1 cut(s)	76
Fnu4HI	GCNGC	3 cut(s)	55, 483, 486
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	3 cut(s)	55, 483, 486
FspBI	CTAG	1 cut(s)	682
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	3 cut(s)	55, 483, 486
HaeII	RGCGCY	1 cut(s)	232
HapII	CCGG	2 cut(s)	178, 450
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	2 cut(s)	227, 350
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	399
HinfI	GANTC	5 cut(s)	163, 328, 495, 550, 568
HpaII	CCGG	2 cut(s)	178, 450
HphI	GGTGA	2 cut(s)	373, 511
Hpy188I	TCNGA	3 cut(s)	265, 327, 500
Hpy188III	TCNNGA	4 cut(s)	332, 530, 547, 648
HpyCH4III	ACNGT	3 cut(s)	65, 147, 293
HpyCH4V	TGCA	8 cut(s)	23, 89, 212, 271, 488, 610, 629, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 376
HpyF3I	CTNAG	2 cut(s)	431, 590
Hsp92II	CATG	2 cut(s)	227, 350
HspAI	GCGC	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	5 cut(s)	76, 273, 313, 463, 490
LmnI	GCTCC	1 cut(s)	500
Lsp1109I	GCAGC	3 cut(s)	66, 472, 494
LweI	GCATC	2 cut(s)	199, 388
MaeI	CTAG	1 cut(s)	682
MalI	GATC	5 cut(s)	78, 275, 315, 465, 492
MboI	GATC	5 cut(s)	76, 273, 313, 463, 490
MboII	GAAGA	3 cut(s)	116, 448, 545
MfeI	CAATTG	1 cut(s)	317
MluCI	AATT	3 cut(s)	119, 157, 317
MnlI	CCTC	5 cut(s)	64, 100, 177, 426, 532
MseI	TTAA	1 cut(s)	155
MslI	CAYNNNNRTG	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	2 cut(s)	178, 450
MspR9I	CCNGG	3 cut(s)	178, 179, 451
MunI	CAATTG	1 cut(s)	317
MvnI	CGCG	1 cut(s)	577
MwoI	GCNNNNNNNGC	2 cut(s)	245, 376
NciI	CCSGG	3 cut(s)	178, 179, 451
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	5 cut(s)	76, 273, 313, 463, 490
NlaIII	CATG	2 cut(s)	227, 350
NlaIV	GGNNCC	1 cut(s)	502
NspI	RCATGY	1 cut(s)	350
PaeR7I	CTCGAG	1 cut(s)	40
PfeI	GAWTC	5 cut(s)	163, 328, 495, 550, 568
PkrI	GCNGC	3 cut(s)	56, 484, 487
PsiI	TTATAA	1 cut(s)	615
PspN4I	GGNNCC	1 cut(s)	502
PspXI	VCTCGAGB	1 cut(s)	40
PsrI	GAACNNNNNNTAC	1 cut(s)	28
PstI	CTGCAG	2 cut(s)	273, 490
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	2 cut(s)	67, 419
RsaNI	GTAC	2 cut(s)	66, 418
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	3 cut(s)	55, 483, 486
Sau3AI	GATC	5 cut(s)	76, 273, 313, 463, 490
ScrFI	CCNGG	3 cut(s)	178, 179, 451
SfaNI	GCATC	2 cut(s)	199, 388
SfcI	CTRYAG	4 cut(s)	13, 269, 476, 486
Sfr274I	CTCGAG	1 cut(s)	40
SlaI	CTCGAG	1 cut(s)	40
SmaI	CCCGGG	1 cut(s)	179
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
Sse9I	AATT	3 cut(s)	119, 157, 317
SspMI	CTAG	1 cut(s)	682
StyD4I	CCNGG	3 cut(s)	176, 177, 449
TaaI	ACNGT	3 cut(s)	65, 147, 293
TaqI	TCGA	5 cut(s)	41, 161, 301, 493, 546
TasI	AATT	3 cut(s)	119, 157, 317
TfiI	GAWTC	5 cut(s)	163, 328, 495, 550, 568
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TseI	GCWGC	3 cut(s)	54, 482, 485
TspDTI	ATGAA	3 cut(s)	17, 428, 455
TspGWI	ACGGA	4 cut(s)	21, 83, 435, 633
TspMI	CCCGGG	1 cut(s)	177
XapI	RAATTY	2 cut(s)	119, 157
XceI	RCATGY	1 cut(s)	350
XhoI	CTCGAG	1 cut(s)	40
XmaI	CCCGGG	1 cut(s)	177
XspI	CTAG	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.