Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002298

Physical Location & Seq

Genomic Coordinates Forward (+)

20123148 .. 20128480

Gene Structure 5333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G187500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAACGGAAGCTACAGCAATGCAAGTGCGAGTTCAAGCTCGAGTTTAAATAGCAGCTCCCATGACGCAGAGGATGACCAAGCAATTGCAACTATGTTGGCAGAAGACGAAAAGCTCAAAATTGATCACAGGTTGGGGAAAAGGCTCTCCCACTTAGATTCCATTCCGCACACTCCTCGTGTTAATGGGGAGATAATACCTGACGTGAATGATGCTACCCAAGACCATGAGCGGCTGTTAGAAAGGTTGGCTACATATGATTTATCTGAACTGCAAATTGAGGGTGATGGAAATTGCCAGTTTCGAGCATTAGCAGATCAGTTGTTTCGTAATCCAGATTACCACAAGCATGTACGAAAACAGGTGGTAAAGCAGCTAAAGCATCACAGAAAACTCTATGAAGCTTATGTCCCTATGAAGTACAGACACTACCTGAAGAAGATGAAGAAAGCCGGGGAGTGGGGAGATCATCTTACCCTTCAGGCAGCTGCAGATCGATTTGGAGCCAAAATTTGTGTAATCACCTCTTTTCGAGACGCTTGCTATATTGAGATCCTTCCTAAAGACAGGAATCCTACCCGAGGCAAGTTGGGCTTTTCAACACGTTCGATGGTAATAATGTCAATTTTTGCATGGAACTACACATTTGGATTGGACCTGATGCAGAACTTGATGTCAGTTTCTGTTGAAGCTTTGCATGATAAACTCAATGAGGTCCCTCTTGTTTTTGTTTCAGAGGTTTGGCTGAGCTTTTGGAGTGAAGTGCATTATAACTCATTGTATGCAAGTGCAGATGTTCCGACAAGAAATCCCAGAAAGAAGCATTGGCTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

279

Amino Acids

31.96

Weight (kDa)

7.79

Isoelectric Point (pI)

35.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22260 AT3G22260 AT3G22260 AT3G22260 AT3G22260 AT3G22260
fragaria_vesca	FvH4_6g39711 FvH4_6g39711 FvH4_6g39711
malus_domestica	MD09G1137400.v1.1 MD17G1127700.v1.1
prunus_persica	Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.7G037800_v2.0.a1
pyrus_communis	pycom09g05850 pycom17g12000
rosa_chinensis	RchiOBHm_Chr2g0153801 RchiOBHm_Chr5g0025881 RchiOBHm_Chr7g0227291
rosa_laevigata	RLG00000020725
rosa_multiflora	Rmu_sc0011717.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326950
rosa_rugosa	Rorug02G0441900 Rorug02G0442000
rosa_samantha	Rh1DG092300 Rh2AG505900 Rh2CG183800 Rh2DG527900
rosa_wichuraiana	Rw1G019200 Rw2G041510 Rw7G022710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	771
AccBSI	CCGCTC	1 cut(s)	232
AciI	CCGC	2 cut(s)	167, 232
AclWI	GGATC	1 cut(s)	547
AcsI	RAATTY	1 cut(s)	510
AcuI	CTGAAG	2 cut(s)	455, 464
AfaI	GTAC	2 cut(s)	354, 422
AfiI	CCNNNNNNNGG	2 cut(s)	459, 581
AflIII	ACRYGT	1 cut(s)	602
AgsI	TTSAA	3 cut(s)	36, 600, 689
AjiI	CACGTC	1 cut(s)	205
AjuI	GAANNNNNNNTTGG	1 cut(s)	808
AluBI	AGCT	9 cut(s)	12, 39, 57, 115, 376, 404, 488, 692, 750
AluI	AGCT	9 cut(s)	12, 39, 57, 115, 376, 404, 488, 692, 750
Alw26I	GTCTC	1 cut(s)	528
AlwI	GGATC	1 cut(s)	547
AlwNI	CAGNNNCTG	1 cut(s)	683
Ama87I	CYCGRG	2 cut(s)	40, 579
ApeKI	GCWGC	4 cut(s)	54, 373, 485, 488
ApoI	RAATTY	1 cut(s)	510
AspS9I	GGNCC	2 cut(s)	655, 715
AsuC2I	CCSGG	1 cut(s)	454
AsuHPI	GGTGA	2 cut(s)	296, 514
AvaI	CYCGRG	2 cut(s)	40, 579
AvaII	GGWCC	2 cut(s)	655, 715
BauI	CACGAG	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	111
BbvI	GCAGC	4 cut(s)	66, 385, 475, 497
BccI	CCATC	2 cut(s)	281, 604
BcgI	CGANNNNNNTGC	4 cut(s)	158, 192, 522, 556
BclI	TGATCA	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	454
BcoDI	GTCTC	1 cut(s)	528
BfaI	CTAG	1 cut(s)	835
BfmI	CTRYAG	2 cut(s)	13, 489
BisI	GCNGC	5 cut(s)	55, 233, 374, 486, 489
BlpI	GCTNAGC	1 cut(s)	746
BlsI	GCNGC	5 cut(s)	56, 234, 375, 487, 490
Bme1390I	CCNGG	1 cut(s)	454
Bme18I	GGWCC	2 cut(s)	655, 715
BmeT110I	CYCGRG	2 cut(s)	40, 579
BmgBI	CACGTC	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	655, 715
BmiI	GGNNCC	2 cut(s)	505, 717
BmrFI	CCNGG	1 cut(s)	454
BmsI	GCATC	3 cut(s)	202, 391, 651
BpiI	GAAGAC	1 cut(s)	111
Bpu1102I	GCTNAGC	1 cut(s)	746
BpuMI	CCSGG	1 cut(s)	454
Bsa29I	ATCGAT	1 cut(s)	496
BsaJI	CCNNGG	2 cut(s)	453, 580
Bsc4I	CCNNNNNNNGG	2 cut(s)	459, 581
Bse1I	ACTGG	1 cut(s)	298
Bse3DI	GCAATG	1 cut(s)	25
BseCI	ATCGAT	1 cut(s)	496
BseDI	CCNNGG	2 cut(s)	453, 580
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	2 cut(s)	459, 581
BseMI	GCAATG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	737
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	1 cut(s)	165
BseXI	GCAGC	4 cut(s)	66, 385, 475, 497
BsgI	GTGCAG	1 cut(s)	810
BshVI	ATCGAT	1 cut(s)	496
BsiHKCI	CYCGRG	2 cut(s)	40, 579
BsiSI	CCGG	1 cut(s)	453
BslFI	GGGAC	2 cut(s)	395, 701
BslI	CCNNNNNNNGG	2 cut(s)	459, 581
BsmAI	GTCTC	1 cut(s)	528
BsmBI	CGTCTC	1 cut(s)	528
BsmFI	GGGAC	2 cut(s)	395, 701
BsoBI	CYCGRG	2 cut(s)	40, 579
Bsp143I	GATC	5 cut(s)	124, 316, 466, 493, 552
Bsp1720I	GCTNAGC	1 cut(s)	746
BspACI	CCGC	2 cut(s)	167, 232
BspCNI	CTCAG	1 cut(s)	738
BspDI	ATCGAT	1 cut(s)	496
BspLI	GGNNCC	2 cut(s)	505, 717
BspMAI	CTGCAG	1 cut(s)	493
BspPI	GGATC	1 cut(s)	547
BsrBI	CCGCTC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	2 cut(s)	453, 580
BssMI	GATC	5 cut(s)	124, 316, 466, 493, 552
BssSI	CACGAG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	541
BstDEI	CTNAG	2 cut(s)	154, 746
BstENI	CCTNNNNNAGG	1 cut(s)	579
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	5 cut(s)	127, 319, 469, 496, 555
BstMAI	GTCTC	1 cut(s)	528
BstMBI	GATC	5 cut(s)	124, 316, 466, 493, 552
BstMWI	GCNNNNNNNGC	2 cut(s)	379, 591
BstNSI	RCATGY	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	452
BstSFI	CTRYAG	2 cut(s)	13, 489
BstV1I	GCAGC	4 cut(s)	66, 385, 475, 497
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	552
BstYI	RGATCY	1 cut(s)	552
Bsu15I	ATCGAT	1 cut(s)	496
BsuTUI	ATCGAT	1 cut(s)	496
BtrI	CACGTC	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	541
CaiI	CAGNNNCTG	1 cut(s)	683
Cfr13I	GGNCC	2 cut(s)	655, 715
ClaI	ATCGAT	1 cut(s)	496
CseI	GACGC	2 cut(s)	74, 545
Csp6I	GTAC	2 cut(s)	353, 421
CviAII	CATG	5 cut(s)	62, 227, 350, 633, 698
CviQI	GTAC	2 cut(s)	353, 421
DdeI	CTNAG	2 cut(s)	154, 746
DpnI	GATC	5 cut(s)	126, 318, 468, 495, 554
DpnII	GATC	5 cut(s)	124, 316, 466, 493, 552
DraI	TTTAAA	1 cut(s)	48
Eco47I	GGWCC	2 cut(s)	655, 715
Eco57I	CTGAAG	2 cut(s)	455, 464
Eco88I	CYCGRG	2 cut(s)	40, 579
EcoNI	CCTNNNNNAGG	1 cut(s)	579
EcoO109I	RGGNCCY	1 cut(s)	715
Esp3I	CGTCTC	1 cut(s)	528
FaeI	CATG	5 cut(s)	65, 230, 353, 636, 701
FalI	AAGNNNNNCTT	2 cut(s)	578, 610
FaqI	GGGAC	2 cut(s)	395, 701
FatI	CATG	5 cut(s)	61, 226, 349, 632, 697
FauNDI	CATATG	1 cut(s)	256
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	5 cut(s)	55, 233, 374, 486, 489
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	5 cut(s)	55, 233, 374, 486, 489
FspBI	CTAG	1 cut(s)	835
GluI	GCNGC	5 cut(s)	55, 233, 374, 486, 489
HapII	CCGG	1 cut(s)	453
HgaI	GACGC	2 cut(s)	74, 545
Hin1II	CATG	5 cut(s)	65, 230, 353, 636, 701
HindIII	AAGCTT	2 cut(s)	402, 690
HinfI	GANTC	2 cut(s)	158, 571
HpaII	CCGG	1 cut(s)	453
HphI	GGTGA	2 cut(s)	296, 514
Hpy188I	TCNGA	3 cut(s)	268, 736, 801
Hpy188III	TCNNGA	2 cut(s)	335, 533
HpyAV	CCTTC	2 cut(s)	488, 566
HpyCH4IV	ACGT	2 cut(s)	204, 604
HpyF10VI	GCNNNNNNNGC	2 cut(s)	379, 591
HpyF3I	CTNAG	2 cut(s)	154, 746
HpySE526I	ACGT	2 cut(s)	204, 604
Hsp92II	CATG	5 cut(s)	65, 230, 353, 636, 701
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	5 cut(s)	124, 316, 466, 493, 552
LmnI	GCTCC	2 cut(s)	62, 503
Lsp1109I	GCAGC	4 cut(s)	66, 385, 475, 497
LweI	GCATC	3 cut(s)	202, 391, 651
MaeI	CTAG	1 cut(s)	835
MaeII	ACGT	2 cut(s)	204, 604
MalI	GATC	5 cut(s)	126, 318, 468, 495, 554
MbiI	CCGCTC	1 cut(s)	232
MboI	GATC	5 cut(s)	124, 316, 466, 493, 552
MboII	GAAGA	4 cut(s)	116, 448, 451, 457
MfeI	CAATTG	1 cut(s)	84
MflI	RGATCY	1 cut(s)	552
MluCI	AATT	6 cut(s)	84, 120, 276, 292, 510, 624
MmeI	TCCRAC	1 cut(s)	824
MnlI	CCTC	8 cut(s)	64, 186, 274, 535, 575, 706, 729, 730
MseI	TTAA	2 cut(s)	47, 183
MslI	CAYNNNNRTG	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	1 cut(s)	453
MspR9I	CCNGG	1 cut(s)	454
MunI	CAATTG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	379, 591
NciI	CCSGG	1 cut(s)	454
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	5 cut(s)	124, 316, 466, 493, 552
NlaIII	CATG	5 cut(s)	65, 230, 353, 636, 701
NlaIV	GGNNCC	2 cut(s)	505, 717
NspI	RCATGY	1 cut(s)	353
PaeR7I	CTCGAG	1 cut(s)	40
PfeI	GAWTC	2 cut(s)	158, 571
PkrI	GCNGC	5 cut(s)	56, 234, 375, 487, 490
PpuMI	RGGWCCY	1 cut(s)	715
PsiI	TTATAA	1 cut(s)	771
Psp5II	RGGWCCY	1 cut(s)	715
PspN4I	GGNNCC	2 cut(s)	505, 717
PspPI	GGNCC	2 cut(s)	655, 715
PspPPI	RGGWCCY	1 cut(s)	715
PspXI	VCTCGAGB	1 cut(s)	40
PsrI	GAACNNNNNNTAC	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	493
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	1 cut(s)	552
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	2 cut(s)	354, 422
RsaNI	GTAC	2 cut(s)	353, 421
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	2 cut(s)	47, 183
SatI	GCNGC	5 cut(s)	55, 233, 374, 486, 489
Sau3AI	GATC	5 cut(s)	124, 316, 466, 493, 552
Sau96I	GGNCC	2 cut(s)	655, 715
ScrFI	CCNGG	1 cut(s)	454
SfaNI	GCATC	3 cut(s)	202, 391, 651
SfcI	CTRYAG	2 cut(s)	13, 489
Sfr274I	CTCGAG	1 cut(s)	40
SinI	GGWCC	2 cut(s)	655, 715
SlaI	CTCGAG	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
Sse9I	AATT	6 cut(s)	84, 120, 276, 292, 510, 624
SsiI	CCGC	2 cut(s)	167, 232
SspMI	CTAG	1 cut(s)	835
StyD4I	CCNGG	1 cut(s)	452
TaiI	ACGT	2 cut(s)	207, 607
TaqI	TCGA	5 cut(s)	41, 304, 496, 532, 608
TasI	AATT	6 cut(s)	84, 120, 276, 292, 510, 624
TatI	WGTACW	1 cut(s)	420
TauI	GCSGC	1 cut(s)	235
TfiI	GAWTC	2 cut(s)	158, 571
Tru1I	TTAA	2 cut(s)	47, 183
Tru9I	TTAA	2 cut(s)	47, 183
TseI	GCWGC	4 cut(s)	54, 373, 485, 488
TspDTI	ATGAA	4 cut(s)	17, 414, 431, 458
TspGWI	ACGGA	1 cut(s)	21
VpaK11BI	GGWCC	2 cut(s)	655, 715
XagI	CCTNNNNNAGG	1 cut(s)	579
XapI	RAATTY	1 cut(s)	510
XceI	RCATGY	1 cut(s)	353
XhoI	CTCGAG	1 cut(s)	40
XspI	CTAG	1 cut(s)	835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.