Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002298

Physical Location & Seq

Genomic Coordinates Forward (+)

17303571 .. 17309592

Gene Structure 6022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG092300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGGTAGTATGAATGGAAGCTATAGCAATGCAAATGTGAGCTCAAGCTCGAGTTTGAATAGCAGCTCTCATGATACCGAGGATGACCTGACCATTGCAACTGTTTTGGCAGAAGAGGAAAAGCAGAAAAATGATGGCAAGCTGGGGAAAAGACTCTCCCACTTAGATTTGATTCCGCACACTCTCAGGGTGAATGGGGAGATACCTGACGTGAATGATGCTACTCAAGACCATAAGAGGCTTTCAGAAAGTGGGCAAACTCCAAATGAAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

91

Amino Acids

9.82

Weight (kDa)

4.83

Isoelectric Point (pI)

45.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22260 AT3G22260 AT3G22260 AT3G22260 AT3G22260 AT3G22260
fragaria_vesca	FvH4_6g39711 FvH4_6g39711 FvH4_6g39711
malus_domestica	MD09G1137400.v1.1 MD17G1127700.v1.1
prunus_persica	Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.3G187500_v2.0.a1 Prupe.7G037800_v2.0.a1
pyrus_communis	pycom09g05850 pycom17g12000
rosa_chinensis	RchiOBHm_Chr2g0153801 RchiOBHm_Chr5g0025881 RchiOBHm_Chr7g0227291
rosa_laevigata	RLG00000020725
rosa_multiflora	Rmu_sc0011717.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326950
rosa_rugosa	Rorug02G0441900 Rorug02G0442000
rosa_samantha	Rh1DG092300 Rh2AG505900 Rh2CG183800 Rh2DG527900
rosa_wichuraiana	Rw1G019200 Rw2G041510 Rw7G022710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	176
AgsI	TTSAA	1 cut(s)	58
AjiI	CACGTC	1 cut(s)	211
AluBI	AGCT	5 cut(s)	21, 42, 48, 66, 142
AluI	AGCT	5 cut(s)	21, 42, 48, 66, 142
Alw21I	GWGCWC	1 cut(s)	44
Ama87I	CYCGRG	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	202
AvaI	CYCGRG	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	75
BccI	CCATC	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	22
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
BmeT110I	CYCGRG	1 cut(s)	49
BmgBI	CACGTC	1 cut(s)	211
BmsI	GCATC	1 cut(s)	208
BpuEI	CTTGAG	2 cut(s)	28, 210
BsaJI	CCNNGG	1 cut(s)	78
Bse3DI	GCAATG	2 cut(s)	34, 93
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	88
BseMI	GCAATG	2 cut(s)	34, 93
BseMII	CTCAG	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	75
BseYI	CCCAGC	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	44
BsiHKCI	CYCGRG	1 cut(s)	49
BsoBI	CYCGRG	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	44
BspACI	CCGC	1 cut(s)	176
BspCNI	CTCAG	1 cut(s)	198
BspHI	TCATGA	1 cut(s)	70
BsrDI	GCAATG	2 cut(s)	34, 93
BssECI	CCNNGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	2 cut(s)	163, 185
BstF5I	GGATG	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	140
CciI	TCATGA	1 cut(s)	70
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	6 cut(s)	21, 42, 48, 66, 142, 241
CviKI_1	RGCY	6 cut(s)	21, 42, 48, 66, 142, 241
DdeI	CTNAG	2 cut(s)	163, 185
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Ecl136II	GAGCTC	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	44
FaeI	CATG	1 cut(s)	74
FaiI	YATR	4 cut(s)	11, 24, 72, 234
FatI	CATG	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	64
FokI	GGATG	1 cut(s)	95
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	64
GluI	GCNGC	1 cut(s)	64
GsaI	CCCAGC	1 cut(s)	146
Hin1II	CATG	1 cut(s)	74
HinfI	GANTC	2 cut(s)	153, 172
HphI	GGTGA	1 cut(s)	202
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	2 cut(s)	71, 227
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	2 cut(s)	32, 98
HpyF3I	CTNAG	2 cut(s)	163, 185
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	1 cut(s)	74
LpnPI	CCDG	4 cut(s)	101, 128, 172, 219
Lsp1109I	GCAGC	1 cut(s)	75
LweI	GCATC	1 cut(s)	208
MaeII	ACGT	1 cut(s)	210
MboII	GAAGA	1 cut(s)	125
MhlI	GDGCHC	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	147
MnlI	CCTC	3 cut(s)	73, 109, 231
NlaIII	CATG	1 cut(s)	74
PaeR7I	CTCGAG	1 cut(s)	49
PagI	TCATGA	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	65
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
Psp124BI	GAGCTC	1 cut(s)	44
PspFI	CCCAGC	1 cut(s)	142
PspXI	VCTCGAGB	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	44
SatI	GCNGC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	9 cut(s)	23, 44, 50, 68, 90, 144, 208, 213, 275
SfaNI	GCATC	1 cut(s)	208
SfcI	CTRYAG	1 cut(s)	22
Sfr274I	CTCGAG	1 cut(s)	49
SlaI	CTCGAG	1 cut(s)	49
SmlI	CTYRAG	3 cut(s)	43, 49, 225
SmoI	CTYRAG	3 cut(s)	43, 49, 225
SsiI	CCGC	1 cut(s)	176
SstI	GAGCTC	1 cut(s)	44
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	63
TspDTI	ATGAA	1 cut(s)	26
XhoI	CTCGAG	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.