RchiOBHm_Chr2g0153801

OTU domain-containing protein DDB_G0284757-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002298
Physical Location & Seq
Forward (+)
71062152 .. 71066598
4447 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52286

Sequence Viewer

Length: 681 bp
ATGAATGGAAGCTATAGCAATGCAAGTGAGAGCTCAAGCTCGAGTTTGAATAGCAGCTCTCATGATACCGAGGATGACCTGACCATTGCAACTGTCTTGGCAGAAGAGGAAAAGCAGAAAAGTGATGGCAGGCTGGGGAAAAGACTCTCCCACTTAGATTCGATTCCGCACACTCCCAGGGTGAATGGGGAGATACCTGATGTGAATGATGCTACTCAGGACCATAAGAGGCTTTCAGAAAGGCTGGCTACCTATGATCTATCTGAGCTGCAAATTGAGGGTGACGGAAATTGCCAGTTTCGAGCAATAGCTGATCAGTTGTTTCGCAATCCGGATTACCATAAGCATGTTAGAAAGCAGGTTATAAAGCAGTTAAAGCATCACAGAAAACTCTATGAAGCTTATGTCCCAATGAAATACAAAAGTTACCTGAGGAAGATGAAAAAAAAAGGGGAGTGGGGAGATCATCTGACCCTACAGGCAGCTGCTGACCGATTTGGAGCCAAAATTTGTTTAATCACCTCTTTTCGGGATACTTGCTACATTGAGATCCTTCCTAAAGACAGGAATCCTACCCGAGAGCTTTGGCTGAGCTTTTGGAGTGAAGTGCATTACAACTCACTATATGCTACTGCAGATGTTCCCACAAGAAGTCCCAGAAAGAAGCATTGGCTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

226

Amino Acids

26.17

Weight (kDa)

8.83

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 94 - 184 5.1e-14 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 365
Acc36I ACCTGC 1 cut(s) 349
AccIII TCCGGA 1 cut(s) 331
AciI CCGC 1 cut(s) 167
AclWI GGATC 1 cut(s) 544
AcsI RAATTY 1 cut(s) 507
AfiI CCNNNNNNNGG 1 cut(s) 528
AgsI TTSAA 1 cut(s) 49
AjnI CCWGG 1 cut(s) 176
AjuI GAANNNNNNNTTGG 1 cut(s) 652
Alw21I GWGCWC 1 cut(s) 35
AlwI GGATC 1 cut(s) 544
AlwNI CAGNNNCTG 1 cut(s) 488
Ama87I CYCGRG 2 cut(s) 40, 576
Aor13HI TCCGGA 1 cut(s) 331
ApeKI GCWGC 4 cut(s) 54, 268, 482, 485
ApoI RAATTY 1 cut(s) 507
AspS9I GGNCC 1 cut(s) 220
AsuHPI GGTGA 3 cut(s) 193, 293, 511
AvaI CYCGRG 2 cut(s) 40, 576
AvaII GGWCC 1 cut(s) 220
AxyI CCTNAGG 1 cut(s) 431
BanII GRGCYC 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 35
BbvI GCAGC 4 cut(s) 66, 255, 472, 494
BccI CCATC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 178
BciVI GTATCC 1 cut(s) 526
BclI TGATCA 1 cut(s) 313
BfaI CTAG 1 cut(s) 679
BfmI CTRYAG 3 cut(s) 13, 476, 633
BfuAI ACCTGC 1 cut(s) 349
BfuI GTATCC 1 cut(s) 526
BisI GCNGC 4 cut(s) 55, 269, 483, 486
BlpI GCTNAGC 1 cut(s) 590
BlsI GCNGC 4 cut(s) 56, 270, 484, 487
Bme1390I CCNGG 1 cut(s) 178
Bme18I GGWCC 1 cut(s) 220
BmeT110I CYCGRG 2 cut(s) 40, 576
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 502
BmrFI CCNGG 1 cut(s) 178
BmsI GCATC 2 cut(s) 199, 388
Bpu1102I GCTNAGC 1 cut(s) 590
BpuEI CTTGAG 1 cut(s) 19
BsaJI CCNNGG 3 cut(s) 69, 176, 177
BsaWI WCCGGW 1 cut(s) 331
Bsc4I CCNNNNNNNGG 1 cut(s) 528
Bse1I ACTGG 1 cut(s) 295
Bse21I CCTNAGG 1 cut(s) 431
Bse3DI GCAATG 2 cut(s) 25, 84
BseAI TCCGGA 1 cut(s) 331
BseBI CCWGG 1 cut(s) 178
BseDI CCNNGG 3 cut(s) 69, 176, 177
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 528
BseMI GCAATG 2 cut(s) 25, 84
BseMII CTCAG 4 cut(s) 230, 255, 422, 581
BseNI ACTGG 1 cut(s) 295
BseXI GCAGC 4 cut(s) 66, 255, 472, 494
BseYI CCCAGC 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 35
BsiHKCI CYCGRG 2 cut(s) 40, 576
BsiSI CCGG 1 cut(s) 332
BslFI GGGAC 2 cut(s) 392, 639
BslI CCNNNNNNNGG 1 cut(s) 528
BsmFI GGGAC 2 cut(s) 392, 639
BsoBI CYCGRG 2 cut(s) 40, 576
Bsp1286I GDGCHC 1 cut(s) 35
Bsp13I TCCGGA 1 cut(s) 331
Bsp143I GATC 4 cut(s) 256, 313, 463, 549
Bsp1720I GCTNAGC 1 cut(s) 590
BspACI CCGC 1 cut(s) 167
BspCNI CTCAG 4 cut(s) 229, 256, 423, 582
BspEI TCCGGA 1 cut(s) 331
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 502
BspMAI CTGCAG 1 cut(s) 637
BspMI ACCTGC 1 cut(s) 349
BspPI GGATC 1 cut(s) 544
BsrDI GCAATG 2 cut(s) 25, 84
BsrI ACTGG 1 cut(s) 295
BssECI CCNNGG 3 cut(s) 69, 176, 177
BssMI GATC 4 cut(s) 256, 313, 463, 549
Bst2UI CCWGG 1 cut(s) 178
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 99
BstC8I GCNNGC 2 cut(s) 131, 246
BstDEI CTNAG 5 cut(s) 154, 216, 264, 431, 590
BstF5I GGATG 1 cut(s) 79
BstKTI GATC 4 cut(s) 259, 316, 466, 552
BstMBI GATC 4 cut(s) 256, 313, 463, 549
BstMWI GCNNNNNNNGC 1 cut(s) 376
BstNI CCWGG 1 cut(s) 178
BstNSI RCATGY 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 176
BstSFI CTRYAG 3 cut(s) 13, 476, 633
BstV1I GCAGC 4 cut(s) 66, 255, 472, 494
BstX2I RGATCY 1 cut(s) 549
BstYI RGATCY 1 cut(s) 549
Bsu36I CCTNAGG 1 cut(s) 431
BsuI GTATCC 1 cut(s) 526
BtsCI GGATG 1 cut(s) 79
BveI ACCTGC 1 cut(s) 349
Cac8I GCNNGC 2 cut(s) 131, 246
CaiI CAGNNNCTG 1 cut(s) 488
CciI TCATGA 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 220
CviAII CATG 2 cut(s) 62, 347
DdeI CTNAG 5 cut(s) 154, 216, 264, 431, 590
DpnI GATC 4 cut(s) 258, 315, 465, 551
DpnII GATC 4 cut(s) 256, 313, 463, 549
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Ecl136II GAGCTC 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 35
Eco47I GGWCC 1 cut(s) 220
Eco53kI GAGCTC 1 cut(s) 33
Eco81I CCTNAGG 1 cut(s) 431
Eco88I CYCGRG 2 cut(s) 40, 576
EcoICRI GAGCTC 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 35
FaeI CATG 2 cut(s) 65, 350
FaqI GGGAC 2 cut(s) 392, 639
FatI CATG 2 cut(s) 61, 346
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 4 cut(s) 55, 269, 483, 486
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 4 cut(s) 55, 269, 483, 486
FspBI CTAG 1 cut(s) 679
GluI GCNGC 4 cut(s) 55, 269, 483, 486
GsaI CCCAGC 1 cut(s) 137
HapII CCGG 1 cut(s) 332
Hin1II CATG 2 cut(s) 65, 350
HindIII AAGCTT 1 cut(s) 399
HinfI GANTC 4 cut(s) 144, 158, 163, 568
HpaII CCGG 1 cut(s) 332
HphI GGTGA 3 cut(s) 193, 293, 511
Hpy188I TCNGA 3 cut(s) 238, 265, 471
Hpy188III TCNNGA 4 cut(s) 62, 218, 332, 530
HpyAV CCTTC 1 cut(s) 563
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 5 cut(s) 23, 89, 271, 610, 635
HpyF10VI GCNNNNNNNGC 1 cut(s) 376
HpyF3I CTNAG 5 cut(s) 154, 216, 264, 431, 590
Hsp92II CATG 2 cut(s) 65, 350
Kpn2I TCCGGA 1 cut(s) 331
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 4 cut(s) 256, 313, 463, 549
LmnI GCTCC 1 cut(s) 500
Lsp1109I GCAGC 4 cut(s) 66, 255, 472, 494
LweI GCATC 2 cut(s) 199, 388
MaeI CTAG 1 cut(s) 679
MaeIII GTNAC 2 cut(s) 281, 425
MalI GATC 4 cut(s) 258, 315, 465, 551
MboI GATC 4 cut(s) 256, 313, 463, 549
MboII GAAGA 2 cut(s) 116, 448
MflI RGATCY 1 cut(s) 549
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 3 cut(s) 273, 289, 507
MlyI GAGTC 1 cut(s) 138
MnlI CCTC 6 cut(s) 64, 100, 222, 271, 426, 532
MroI TCCGGA 1 cut(s) 331
MseI TTAA 2 cut(s) 374, 515
MslI CAYNNNNRTG 1 cut(s) 345
MspA1I CMGCKG 1 cut(s) 485
MspI CCGG 1 cut(s) 332
MspR9I CCNGG 1 cut(s) 178
MvaI CCWGG 1 cut(s) 178
MwoI GCNNNNNNNGC 1 cut(s) 376
NdeII GATC 4 cut(s) 256, 313, 463, 549
NlaIII CATG 2 cut(s) 65, 350
NlaIV GGNNCC 1 cut(s) 502
NmuCI GTSAC 1 cut(s) 281
NspI RCATGY 1 cut(s) 350
PaeR7I CTCGAG 1 cut(s) 40
PagI TCATGA 1 cut(s) 61
PasI CCCWGGG 1 cut(s) 177
PfeI GAWTC 3 cut(s) 158, 163, 568
PkrI GCNGC 4 cut(s) 56, 270, 484, 487
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
PsiI TTATAA 1 cut(s) 365
Psp124BI GAGCTC 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 176
PspFI CCCAGC 1 cut(s) 133
PspGI CCWGG 1 cut(s) 176
PspN4I GGNNCC 1 cut(s) 502
PspPI GGNCC 1 cut(s) 220
PspXI VCTCGAGB 1 cut(s) 40
PstI CTGCAG 1 cut(s) 637
PstNI CAGNNNCTG 1 cut(s) 488
PsuI RGATCY 1 cut(s) 549
PvuII CAGCTG 1 cut(s) 485
RseI CAYNNNNRTG 1 cut(s) 345
SacI GAGCTC 1 cut(s) 35
SaqAI TTAA 2 cut(s) 374, 515
SatI GCNGC 4 cut(s) 55, 269, 483, 486
Sau3AI GATC 4 cut(s) 256, 313, 463, 549
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 1 cut(s) 138
ScrFI CCNGG 1 cut(s) 178
SduI GDGCHC 1 cut(s) 35
SfaNI GCATC 2 cut(s) 199, 388
SfcI CTRYAG 3 cut(s) 13, 476, 633
Sfr274I CTCGAG 1 cut(s) 40
SinI GGWCC 1 cut(s) 220
SlaI CTCGAG 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 2 cut(s) 34, 40
SmoI CTYRAG 2 cut(s) 34, 40
Sse9I AATT 3 cut(s) 273, 289, 507
SsiI CCGC 1 cut(s) 167
SspMI CTAG 1 cut(s) 679
SstI GAGCTC 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 176
TaaI ACNGT 1 cut(s) 94
TaqI TCGA 3 cut(s) 41, 161, 301
TaqII GACCGA 1 cut(s) 507
TasI AATT 3 cut(s) 273, 289, 507
TfiI GAWTC 3 cut(s) 158, 163, 568
Tru1I TTAA 2 cut(s) 374, 515
Tru9I TTAA 2 cut(s) 374, 515
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 4 cut(s) 54, 268, 482, 485
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 4 cut(s) 17, 411, 428, 455
TspGWI ACGGA 1 cut(s) 300
VpaK11BI GGWCC 1 cut(s) 220
XapI RAATTY 1 cut(s) 507
XceI RCATGY 1 cut(s) 350
XhoI CTCGAG 1 cut(s) 40
XspI CTAG 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.