RchiOBHm_Chr5g0025881

OTU domain-containing protein DDB_G0284757-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002298
Physical Location & Seq
Reverse (-)
19865363 .. 19870662
5300 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30548

Sequence Viewer

Length: 276 bp
ATGAATGGAAGCTATAGCAATGCAAATGTGAGCTCAAGCTCGAGTTTGAATAGCAGCTCTCATGATACCGAGGATGACCTGACCATTGCAACTGTTTTGGCAGAAGAGGAAAAGCAGAAAAATGATGGCAAGCTGGGGAAAAGACTCTCCCACTTAGATTTGATTCCGCACACTCTCAGGGTGAATGGGGAGATACCTGACGTGAATGATGCTACTCAAGACCATAAGAGGCTTTCAGAAAGCTCAAGTCAAGTACGCTCAAAGAGATCATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

91

Amino Acids

9.98

Weight (kDa)

5.72

Isoelectric Point (pI)

63.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 167
AfaI GTAC 1 cut(s) 255
AgsI TTSAA 1 cut(s) 49
AjiI CACGTC 1 cut(s) 202
AluBI AGCT 6 cut(s) 12, 33, 39, 57, 133, 243
AluI AGCT 6 cut(s) 12, 33, 39, 57, 133, 243
Alw21I GWGCWC 1 cut(s) 35
Ama87I CYCGRG 1 cut(s) 40
ApeKI GCWGC 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 193
AvaI CYCGRG 1 cut(s) 40
BanII GRGCYC 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 66
BccI CCATC 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 13
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
BmeT110I CYCGRG 1 cut(s) 40
BmgBI CACGTC 1 cut(s) 202
BmsI GCATC 1 cut(s) 199
BpuEI CTTGAG 3 cut(s) 19, 201, 229
BsaJI CCNNGG 1 cut(s) 69
Bse3DI GCAATG 2 cut(s) 25, 84
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 79
BseMI GCAATG 2 cut(s) 25, 84
BseMII CTCAG 1 cut(s) 190
BseXI GCAGC 1 cut(s) 66
BseYI CCCAGC 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 35
BsiHKCI CYCGRG 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 1 cut(s) 266
BspACI CCGC 1 cut(s) 167
BspCNI CTCAG 1 cut(s) 189
BspHI TCATGA 1 cut(s) 61
BsrDI GCAATG 2 cut(s) 25, 84
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 1 cut(s) 266
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 2 cut(s) 154, 176
BstF5I GGATG 1 cut(s) 79
BstKTI GATC 1 cut(s) 269
BstMBI GATC 1 cut(s) 266
BstSFI CTRYAG 1 cut(s) 13
BstV1I GCAGC 1 cut(s) 66
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 131
CciI TCATGA 1 cut(s) 61
Csp6I GTAC 1 cut(s) 254
CviAII CATG 1 cut(s) 62
CviJI RGCY 7 cut(s) 12, 33, 39, 57, 133, 232, 243
CviKI_1 RGCY 7 cut(s) 12, 33, 39, 57, 133, 232, 243
CviQI GTAC 1 cut(s) 254
DdeI CTNAG 2 cut(s) 154, 176
DpnI GATC 1 cut(s) 268
DpnII GATC 1 cut(s) 266
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Ecl136II GAGCTC 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 35
Eco53kI GAGCTC 1 cut(s) 33
Eco88I CYCGRG 1 cut(s) 40
EcoICRI GAGCTC 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 35
FaeI CATG 1 cut(s) 65
FaiI YATR 3 cut(s) 15, 63, 225
FatI CATG 1 cut(s) 61
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 55
GluI GCNGC 1 cut(s) 55
GsaI CCCAGC 1 cut(s) 137
Hin1II CATG 1 cut(s) 65
HinfI GANTC 2 cut(s) 144, 163
HphI GGTGA 1 cut(s) 193
Hpy188I TCNGA 2 cut(s) 238, 275
Hpy188III TCNNGA 2 cut(s) 62, 218
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 2 cut(s) 23, 89
HpyF3I CTNAG 2 cut(s) 154, 176
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 1 cut(s) 65
Kzo9I GATC 1 cut(s) 266
LpnPI CCDG 4 cut(s) 92, 119, 163, 210
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 1 cut(s) 199
MaeII ACGT 1 cut(s) 201
MalI GATC 1 cut(s) 268
MboI GATC 1 cut(s) 266
MboII GAAGA 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 35
MlyI GAGTC 1 cut(s) 138
MnlI CCTC 3 cut(s) 64, 100, 222
NdeII GATC 1 cut(s) 266
NlaIII CATG 1 cut(s) 65
PaeR7I CTCGAG 1 cut(s) 40
PagI TCATGA 1 cut(s) 61
PfeI GAWTC 1 cut(s) 163
PkrI GCNGC 1 cut(s) 56
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
Psp124BI GAGCTC 1 cut(s) 35
PspFI CCCAGC 1 cut(s) 133
PspXI VCTCGAGB 1 cut(s) 40
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
SacI GAGCTC 1 cut(s) 35
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 1 cut(s) 266
SchI GAGTC 1 cut(s) 138
SduI GDGCHC 1 cut(s) 35
SetI ASST 9 cut(s) 14, 35, 41, 59, 81, 135, 199, 204, 245
SfaNI GCATC 1 cut(s) 199
SfcI CTRYAG 1 cut(s) 13
Sfr274I CTCGAG 1 cut(s) 40
SlaI CTCGAG 1 cut(s) 40
SmlI CTYRAG 4 cut(s) 34, 40, 216, 244
SmoI CTYRAG 4 cut(s) 34, 40, 216, 244
SsiI CCGC 1 cut(s) 167
SstI GAGCTC 1 cut(s) 35
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 1 cut(s) 204
TaqI TCGA 1 cut(s) 41
TfiI GAWTC 1 cut(s) 163
TseI GCWGC 1 cut(s) 54
TspDTI ATGAA 1 cut(s) 17
XhoI CTCGAG 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.