Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007524

Physical Location & Seq

Genomic Coordinates Forward (+)

35866323 .. 35869979

Gene Structure 3657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47220.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGATTAACAAACGATCTTTTGCTGATGAGGGTTCTTATGAGGTTGCTTGTAAGCACCCTAGACATTTGGAGCACTATAATGAGCATGCTCCATATGTGGATGTTTTTCATTTTAGTGATGCTTCCCAGAAATTTCAAATTCCAGATGGTGAAGATGAGGGGAATTGTAAGTTTCAAGAGGGAGAAGGGTCTGCAGCTGCAAGTGACATGGCAACTGAGGTCTCAAATGACACTTACAAAGAACTTGAGACTGGTGCTTCTGGAAGCATGGCCAAATATTTGGGGGTCAACAACTGTATTGTTGACGCTAATGTAAGATCTGAGTCAGAAGCTCATCTTTCATTATTCCCTGAATTTTTCGGACATGTAAACCAATTGAGGGATATACTTCATTCTGACAAGATCTGTTCATCTCCTGTTGATTATTCTCCTCATAACCTAGTTCCTGTCGGGCCTGAGCATCAAGCTTATGTTCCAGACTTGGGCCATGAGGGTTCTCACACTTCAGACAATCTGACTGACTTGGATTCTCAACCTGAACGTCCTTTGGGTGTTAATGAGGAAAAGCGAATGGGTACCTGTGTCCTTTCTATGCCTGACCTTGATGCATCTACAAACTCTTTCTGTGAAGATTTGGGAGCCAGAGACAACTGTATGTGTGCTGATTCAGGTTCTGTAAGATGTGTCAGACAGCACATCACAGACGCTAGGCAGAAATTAAGGGAAGACCTTGGACATGAGCTTTTTGAAGAGTTGGGCTTTTATGAAATGGGGGAGGTGGTTGCAGAGAAATGGAGTGAAGAGGAAGAGCATCTGTTTCATGATGTTGTTCTCTCTAACCCTGCATCATTGGGTAAGAATTATTGGCATAGTCTCTCTATGGCTTTTCCTTCACGAACGCATATGGATATTGTCAGCTATTATTTTAATGTCTTTATGCTCCGGAGGCGTGCTGAGCAGAATAGGTTTGATCCACTAAACACTGATAGCGATGATGATGAGTTGCAAAAAACTGAATTTGGACTGGTGGAGGATGATGAGGAGCCTGTGGTGGTATCTCCTGTTAATTTAGATGCTTCTGCTAATAATCAGGAAGACCGCTTACGGGATGGCCAAGAATACATTGAAGATGCAGATGACATAGATGGTTATGACGATGCTTCCGTGGTTTGTTGCAAAGGTATAAATGAGAATGAGGAGGGTGATCTAGATGACGGCACAAGAGCATCTCATGCTGGGAATTTCCCTGGTGATGGTGTCAGAGCTGCTGAATCTCAGCTTTTGTGTAAAACTCCTGACACTAATAGGGGGGACTATGATATTCAAGATGATTCTTGCACATCTTATGACTATCAGCGAGACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

456

Amino Acids

50.92

Weight (kDa)

4.37

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47220 FvH4_6g47220 FvH4_6g47220
malus_domestica	MD00G1156000.v1.1 MD09G1062800.v1.1 MD17G1056700.v1.1
prunus_persica	Prupe.3G257400_v2.0.a1 Prupe.3G257400_v2.0.a1 Prupe.3G257400_v2.0.a1
pyrus_communis	pycom111g05320 pycom17g05680
rosa_chinensis	RchiOBHm_Chr2g0166271
rosa_laevigata	RLG00000021602
rosa_multiflora	Rmu_sc0016751.1_g000008 Rmu_sc0023080.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085030
rosa_rugosa	Rorug02G0521700 Rorug02G0521800
rosa_samantha	Rh2AG587800 Rh2BG599800 Rh2CG570100 Rh2CG570700 Rh2DG610000
rosa_wichuraiana	Rw0G003910 Rw2G048990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	575
AccB1I	GGYRCC	1 cut(s)	575
AccIII	TCCGGA	1 cut(s)	942
AciI	CCGC	1 cut(s)	1099
AclWI	GGATC	1 cut(s)	965
AcoI	YGGCCR	2 cut(s)	270, 1111
AcsI	RAATTY	5 cut(s)	131, 138, 353, 1016, 1240
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	1 cut(s)	577
AfiI	CCNNNNNNNGG	4 cut(s)	379, 482, 1105, 1253
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	5 cut(s)	137, 176, 749, 1127, 1325
AjnI	CCWGG	1 cut(s)	1246
AluBI	AGCT	7 cut(s)	197, 332, 467, 742, 918, 1265, 1279
AluI	AGCT	7 cut(s)	197, 332, 467, 742, 918, 1265, 1279
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	5 cut(s)	226, 242, 639, 878, 1353
AlwI	GGATC	1 cut(s)	965
AlwNI	CAGNNNCTG	1 cut(s)	674
Aor13HI	TCCGGA	1 cut(s)	942
AoxI	GGCC	4 cut(s)	270, 452, 484, 1111
ApeKI	GCWGC	3 cut(s)	194, 197, 1265
ApoI	RAATTY	5 cut(s)	131, 138, 353, 1016, 1240
Asp718I	GGTACC	1 cut(s)	575
AspS9I	GGNCC	2 cut(s)	452, 484
AsuHPI	GGTGA	3 cut(s)	161, 1214, 1262
BaeI	ACNNNNGTAYC	2 cut(s)	567, 600
BalI	TGGCCA	2 cut(s)	272, 1113
BanI	GGYRCC	1 cut(s)	575
BarI	GAAGNNNNNNTAC	2 cut(s)	1086, 1118
BbsI	GAAGAC	2 cut(s)	732, 1101
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	3 cut(s)	184, 206, 1252
BccI	CCATC	4 cut(s)	140, 1103, 1139, 1247
BceAI	ACGGC	1 cut(s)	1231
BciT130I	CCWGG	1 cut(s)	1248
BcoDI	GTCTC	5 cut(s)	226, 242, 639, 878, 1353
BfaI	CTAG	4 cut(s)	60, 440, 708, 1208
BfmI	CTRYAG	1 cut(s)	192
BglII	AGATCT	2 cut(s)	317, 402
BisI	GCNGC	3 cut(s)	195, 198, 1266
BlpI	GCTNAGC	1 cut(s)	954
BlsI	GCNGC	3 cut(s)	196, 199, 1267
Bme1390I	CCNGG	1 cut(s)	1248
BmgT120I	GGNCC	2 cut(s)	452, 484
BmiI	GGNNCC	3 cut(s)	577, 640, 1044
BmrFI	CCNGG	1 cut(s)	1248
BpiI	GAAGAC	2 cut(s)	732, 1101
Bpu10I	CCTNAGC	1 cut(s)	456
Bpu1102I	GCTNAGC	1 cut(s)	954
BpuEI	CTTGAG	1 cut(s)	266
BsaI	GGTCTC	1 cut(s)	226
BsaJI	CCNNGG	3 cut(s)	730, 1164, 1246
BsaWI	WCCGGW	1 cut(s)	942
Bsc4I	CCNNNNNNNGG	4 cut(s)	379, 482, 1105, 1253
Bse1I	ACTGG	2 cut(s)	256, 1029
BseAI	TCCGGA	1 cut(s)	942
BseBI	CCWGG	1 cut(s)	1248
BseDI	CCNNGG	3 cut(s)	730, 1164, 1246
BseGI	GGATG	3 cut(s)	106, 1039, 1114
BseLI	CCNNNNNNNGG	4 cut(s)	379, 482, 1105, 1253
BseMII	CTCAG	5 cut(s)	207, 312, 447, 945, 1289
BseNI	ACTGG	2 cut(s)	256, 1029
BseRI	GAGGAG	3 cut(s)	420, 1055, 1211
BseXI	GCAGC	3 cut(s)	184, 206, 1252
BseYI	CCCAGC	1 cut(s)	1235
BshFI	GGCC	4 cut(s)	272, 454, 486, 1113
BshNI	GGYRCC	1 cut(s)	575
BsiHKAI	GWGCWC	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	943
BslFI	GGGAC	1 cut(s)	1325
BslI	CCNNNNNNNGG	4 cut(s)	379, 482, 1105, 1253
BsmAI	GTCTC	5 cut(s)	226, 242, 639, 878, 1353
BsmFI	GGGAC	1 cut(s)	1325
BsnI	GGCC	4 cut(s)	272, 454, 486, 1113
Bso31I	GGTCTC	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp13I	TCCGGA	1 cut(s)	942
Bsp143I	GATC	5 cut(s)	14, 317, 402, 970, 1204
Bsp1720I	GCTNAGC	1 cut(s)	954
BspACI	CCGC	1 cut(s)	1099
BspANI	GGCC	4 cut(s)	272, 454, 486, 1113
BspCNI	CTCAG	5 cut(s)	208, 313, 448, 946, 1288
BspEI	TCCGGA	1 cut(s)	942
BspHI	TCATGA	1 cut(s)	820
BspLI	GGNNCC	3 cut(s)	577, 640, 1044
BspMAI	CTGCAG	1 cut(s)	196
BspPI	GGATC	1 cut(s)	965
BspQI	GCTCTTC	1 cut(s)	801
BspT107I	GGYRCC	1 cut(s)	575
BspTNI	GGTCTC	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	256, 1029
BssECI	CCNNGG	3 cut(s)	730, 1164, 1246
BssMI	GATC	5 cut(s)	14, 317, 402, 970, 1204
BssT1I	CCWWGG	1 cut(s)	730
Bst2UI	CCWGG	1 cut(s)	1248
Bst4CI	ACNGT	3 cut(s)	296, 653, 1364
Bst6I	CTCTTC	3 cut(s)	744, 795, 801
BstAPI	GCANNNNNTGC	1 cut(s)	1232
BstC8I	GCNNGC	2 cut(s)	87, 951
BstDEI	CTNAG	5 cut(s)	216, 321, 456, 954, 1275
BstDSI	CCRYGG	1 cut(s)	1164
BstF5I	GGATG	3 cut(s)	106, 1039, 1114
BstKTI	GATC	5 cut(s)	17, 320, 405, 973, 1207
BstMAI	GTCTC	5 cut(s)	226, 242, 639, 878, 1353
BstMBI	GATC	5 cut(s)	14, 317, 402, 970, 1204
BstMWI	GCNNNNNNNGC	3 cut(s)	946, 955, 1232
BstNI	CCWGG	1 cut(s)	1248
BstNSI	RCATGY	2 cut(s)	89, 368
BstSCI	CCNGG	1 cut(s)	1246
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	3 cut(s)	184, 206, 1252
BstV2I	GAAGAC	2 cut(s)	732, 1101
BstX2I	RGATCY	2 cut(s)	317, 402
BstXI	CCANNNNNNTGG	1 cut(s)	280
BstYI	RGATCY	2 cut(s)	317, 402
BsuRI	GGCC	4 cut(s)	272, 454, 486, 1113
BtgI	CCRYGG	1 cut(s)	1164
BtgZI	GCGATG	1 cut(s)	1005
BtsCI	GGATG	3 cut(s)	106, 1039, 1114
BtsIMutI	CAGTG	1 cut(s)	981
Cac8I	GCNNGC	2 cut(s)	87, 951
CaiI	CAGNNNCTG	1 cut(s)	674
CciI	TCATGA	1 cut(s)	820
Cfr13I	GGNCC	2 cut(s)	452, 484
CseI	GACGC	2 cut(s)	314, 713
Csp6I	GTAC	1 cut(s)	576
CviAII	CATG	8 cut(s)	86, 208, 268, 365, 488, 737, 821, 1232
CviQI	GTAC	1 cut(s)	576
DdeI	CTNAG	5 cut(s)	216, 321, 456, 954, 1275
DpnI	GATC	5 cut(s)	16, 319, 404, 972, 1206
DpnII	GATC	5 cut(s)	14, 317, 402, 970, 1204
EaeI	YGGCCR	2 cut(s)	270, 1111
Eam1104I	CTCTTC	3 cut(s)	744, 795, 801
EarI	CTCTTC	3 cut(s)	744, 795, 801
Eco130I	CCWWGG	1 cut(s)	730
Eco31I	GGTCTC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	489
EcoRII	CCWGG	1 cut(s)	1246
EcoT14I	CCWWGG	1 cut(s)	730
EcoT22I	ATGCAT	1 cut(s)	610
ErhI	CCWWGG	1 cut(s)	730
FaeI	CATG	8 cut(s)	89, 211, 271, 368, 491, 740, 824, 1235
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FaqI	GGGAC	1 cut(s)	1325
FatI	CATG	8 cut(s)	85, 207, 267, 364, 487, 736, 820, 1231
FauNDI	CATATG	2 cut(s)	94, 903
Fnu4HI	GCNGC	3 cut(s)	195, 198, 1266
FokI	GGATG	3 cut(s)	113, 1046, 1121
Fsp4HI	GCNGC	3 cut(s)	195, 198, 1266
FspBI	CTAG	4 cut(s)	60, 440, 708, 1208
GluI	GCNGC	3 cut(s)	195, 198, 1266
GsaI	CCCAGC	1 cut(s)	1239
HaeIII	GGCC	4 cut(s)	272, 454, 486, 1113
HapII	CCGG	1 cut(s)	943
HgaI	GACGC	2 cut(s)	314, 713
Hin1II	CATG	8 cut(s)	89, 211, 271, 368, 491, 740, 824, 1235
HincII	GTYRAC	2 cut(s)	289, 304
HindII	GTYRAC	2 cut(s)	289, 304
HindIII	AAGCTT	1 cut(s)	465
HinfI	GANTC	5 cut(s)	323, 527, 665, 1271, 1331
HpaII	CCGG	1 cut(s)	943
HphI	GGTGA	3 cut(s)	161, 1214, 1262
Hpy166II	GTNNAC	3 cut(s)	289, 304, 370
Hpy188I	TCNGA	8 cut(s)	322, 328, 362, 397, 508, 516, 689, 1262
Hpy8I	GTNNAC	3 cut(s)	289, 304, 370
HpyAV	CCTTC	2 cut(s)	179, 900
HpyCH4III	ACNGT	3 cut(s)	296, 653, 1364
HpyCH4IV	ACGT	1 cut(s)	541
HpyCH4V	TGCA	9 cut(s)	194, 200, 608, 785, 845, 1006, 1133, 1176, 1338
HpyF10VI	GCNNNNNNNGC	3 cut(s)	946, 955, 1232
HpyF3I	CTNAG	5 cut(s)	216, 321, 456, 954, 1275
HpySE526I	ACGT	1 cut(s)	541
Hsp92II	CATG	8 cut(s)	89, 211, 271, 368, 491, 740, 824, 1235
Kpn2I	TCCGGA	1 cut(s)	942
KpnI	GGTACC	1 cut(s)	579
Kzo9I	GATC	5 cut(s)	14, 317, 402, 970, 1204
LguI	GCTCTTC	1 cut(s)	801
LmnI	GCTCC	5 cut(s)	70, 94, 638, 945, 1042
Lsp1109I	GCAGC	3 cut(s)	184, 206, 1252
MaeI	CTAG	4 cut(s)	60, 440, 708, 1208
MaeII	ACGT	1 cut(s)	541
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	5 cut(s)	16, 319, 404, 972, 1206
MboI	GATC	5 cut(s)	14, 317, 402, 970, 1204
MboII	GAAGA	8 cut(s)	164, 641, 737, 761, 812, 818, 1106, 1139
MfeI	CAATTG	1 cut(s)	374
MflI	RGATCY	2 cut(s)	317, 402
MhlI	GDGCHC	1 cut(s)	75
MlsI	TGGCCA	2 cut(s)	272, 1113
MluNI	TGGCCA	2 cut(s)	272, 1113
MlyI	GAGTC	1 cut(s)	332
Mox20I	TGGCCA	2 cut(s)	272, 1113
Mph1103I	ATGCAT	1 cut(s)	610
MroI	TCCGGA	1 cut(s)	942
MscI	TGGCCA	2 cut(s)	272, 1113
MseI	TTAA	6 cut(s)	6, 555, 719, 927, 1065, 1366
MslI	CAYNNNNRTG	2 cut(s)	78, 114
Msp20I	TGGCCA	2 cut(s)	272, 1113
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	1 cut(s)	943
MspR9I	CCNGG	1 cut(s)	1248
MunI	CAATTG	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	1248
MwoI	GCNNNNNNNGC	3 cut(s)	946, 955, 1232
NdeI	CATATG	2 cut(s)	94, 903
NdeII	GATC	5 cut(s)	14, 317, 402, 970, 1204
NlaIII	CATG	8 cut(s)	89, 211, 271, 368, 491, 740, 824, 1235
NlaIV	GGNNCC	3 cut(s)	577, 640, 1044
NmuCI	GTSAC	1 cut(s)	203
NsiI	ATGCAT	1 cut(s)	610
NspI	RCATGY	2 cut(s)	89, 368
PaeI	GCATGC	1 cut(s)	89
PagI	TCATGA	1 cut(s)	820
PciI	ACATGT	1 cut(s)	364
PciSI	GCTCTTC	1 cut(s)	801
PcsI	WCGNNNNNNNCGW	1 cut(s)	1161
PfeI	GAWTC	4 cut(s)	527, 665, 1271, 1331
PkrI	GCNGC	3 cut(s)	196, 199, 1267
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
PscI	ACATGT	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	1246
PspFI	CCCAGC	1 cut(s)	1235
PspGI	CCWGG	1 cut(s)	1246
PspN4I	GGNNCC	3 cut(s)	577, 640, 1044
PspPI	GGNCC	2 cut(s)	452, 484
PstI	CTGCAG	1 cut(s)	196
PstNI	CAGNNNCTG	1 cut(s)	674
PsuI	RGATCY	2 cut(s)	317, 402
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	1 cut(s)	577
RsaNI	GTAC	1 cut(s)	576
RseI	CAYNNNNRTG	2 cut(s)	78, 114
SapI	GCTCTTC	1 cut(s)	801
SaqAI	TTAA	6 cut(s)	6, 555, 719, 927, 1065, 1366
SatI	GCNGC	3 cut(s)	195, 198, 1266
Sau3AI	GATC	5 cut(s)	14, 317, 402, 970, 1204
Sau96I	GGNCC	2 cut(s)	452, 484
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	1248
SduI	GDGCHC	1 cut(s)	75
SfcI	CTRYAG	1 cut(s)	192
SmiMI	CAYNNNNRTG	2 cut(s)	78, 114
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SphI	GCATGC	1 cut(s)	89
SsiI	CCGC	1 cut(s)	1099
SspI	AATATT	1 cut(s)	278
SspMI	CTAG	4 cut(s)	60, 440, 708, 1208
StyD4I	CCNGG	1 cut(s)	1246
StyI	CCWWGG	1 cut(s)	730
TaaI	ACNGT	3 cut(s)	296, 653, 1364
TaiI	ACGT	1 cut(s)	544
TfiI	GAWTC	4 cut(s)	527, 665, 1271, 1331
Tru1I	TTAA	6 cut(s)	6, 555, 719, 927, 1065, 1366
Tru9I	TTAA	6 cut(s)	6, 555, 719, 927, 1065, 1366
TscAI	CASTG	1 cut(s)	988
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	3 cut(s)	194, 197, 1265
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	6 cut(s)	98, 330, 380, 399, 780, 809
TspGWI	ACGGA	1 cut(s)	1153
TspRI	CASTG	1 cut(s)	988
XapI	RAATTY	5 cut(s)	131, 138, 353, 1016, 1240
XbaI	TCTAGA	1 cut(s)	1207
XceI	RCATGY	2 cut(s)	89, 368
XspI	CTAG	4 cut(s)	60, 440, 708, 1208
Zsp2I	ATGCAT	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.