Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007524

Physical Location & Seq

Genomic Coordinates Forward (+)

84268026 .. 84269658

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG610000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGATTAACAAACGATCTTTTGGTGATGAGGGTTCTTTTGAGGTTGCTTGTAAGCATCCTAGACATTTGGAACACTATAATGAGCCTGCTCCATATGTGGATGTTTTTCATTTTAGTGATGCTTCCCAGAAATTTCAAACTCCAGATGGCAAAGGTGATGGGAGTTGTAAATTTCAAGAGGAAGGAAGGTCTGCAGCTGCAAGGGACATGGCAACTGAGGTCACAAATGAGACCTACAAAGAACTTGAGACTGGTGCTTCCGGAAGCATGGCCAAATATTTGTGGGTCAACAACAGTATTGTTGAAGCTAATGTAAGATCCGAGTCAGAAGCTCATCTTTCATTGTTCCCAGAATTTTTTGGACCTGTAAACCAGTTGAGGGATATACATCATTCTGACAAGATCTGTTCATCTCCTGTTGATTATTCTCCTCATTACCTAGTCTCTGTTGGACCCGAGCATCAAGCTTATGTTCCAGACTGGGGCCATGAGGGTTCACACACTTCAGATAATCCAGCTAACTTGGATTTTCAACATGAACGTCCTTTGGGTGTTGATGAGGAAAAGCTAATGGGTAGCTGTGTCCTTTCTATGCCTGACCTTGAAGCATCTGCAAACTTTTGCTGTGAAGATGTGGGAGCCAGAGACAACTGTATGTGTGCTGATTCAGGTTCTGTAAGATGTGTCAGACAGCACATCACAGACGCTAGAGAGAATTTAAGGGAAGACCTTGGGCAGGAGCTTTTTGAAGAGTTGGGCTTTTGTGATATGGGAGAGGAGGTTGCAGATAAATGGAGTGAAGAGGAAGAACATCTGTTCCATGATGTTGTCCTCTCTAACCCTGCATCATTGGGTAAGAACTTCTGGCATAATCTCTCAGTGGCCTTTCCTTCACGAACGCATAAGGATGTTGTCAGCTATTATTTTAATGTGTTTATGCTCCGGAGGCGTGCTGAGCAGAATAGGTTTGATCCTCTAAACACTGATAGTGATGATGATGAGTTGCAAAAAAGTGAATTTGGACTGGTAGAGGATAGTGAGGAGCCTGTGGTAGTATCTCCTATTAATCTAGATGCTTCTGCCTATAATGAGGAAGACCACTTACGGGGTGCCCAAGAATACATTGAAGATGCGGATGACATAGATGGTTATGACGATGCTGCCGTGGTCGGATGCAAAGGTATTAATGACAATGAGGGGGGTGATATAGATGATGGCTCAGGAGCATCTCATGCTGGGAATTCCCCTGGTGATTGTGGCAGATCCACTGAATCTCGGCTTTTGTTTAAAACTTCTGAGACTAATAGAGCGGATTATGATATTCAAGATGATTCTTGCACATCCTATGACTATCAGCAAGACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

455

Amino Acids

50.77

Weight (kDa)

4.4

Isoelectric Point (pI)

55.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47220 FvH4_6g47220 FvH4_6g47220
malus_domestica	MD00G1156000.v1.1 MD09G1062800.v1.1 MD17G1056700.v1.1
prunus_persica	Prupe.3G257400_v2.0.a1 Prupe.3G257400_v2.0.a1 Prupe.3G257400_v2.0.a1
pyrus_communis	pycom111g05320 pycom17g05680
rosa_chinensis	RchiOBHm_Chr2g0166271
rosa_laevigata	RLG00000021602
rosa_multiflora	Rmu_sc0016751.1_g000008 Rmu_sc0023080.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085030
rosa_rugosa	Rorug02G0521700 Rorug02G0521800
rosa_samantha	Rh2AG587800 Rh2BG599800 Rh2CG570100 Rh2CG570700 Rh2DG610000
rosa_wichuraiana	Rw0G003910 Rw2G048990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1109
AccBSI	CCGCTC	1 cut(s)	1310
AccIII	TCCGGA	2 cut(s)	260, 942
AciI	CCGC	2 cut(s)	1133, 1310
AclWI	GGATC	3 cut(s)	312, 965, 1257
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	6 cut(s)	131, 170, 353, 715, 1016, 1240
AcuI	CTGAAG	1 cut(s)	489
AfiI	CCNNNNNNNGG	4 cut(s)	379, 482, 736, 1105
AgsI	TTSAA	8 cut(s)	137, 176, 305, 533, 605, 749, 1127, 1325
AjnI	CCWGG	1 cut(s)	1246
AloI	GAACNNNNNNTCC	2 cut(s)	801, 833
AluBI	AGCT	9 cut(s)	197, 308, 332, 467, 518, 568, 579, 742, 918
AluI	AGCT	9 cut(s)	197, 308, 332, 467, 518, 568, 579, 742, 918
Alw26I	GTCTC	5 cut(s)	224, 242, 448, 639, 1292
AlwI	GGATC	3 cut(s)	312, 965, 1257
AlwNI	CAGNNNCTG	1 cut(s)	674
Ama87I	CYCGRG	1 cut(s)	455
Aor13HI	TCCGGA	2 cut(s)	260, 942
AoxI	GGCC	3 cut(s)	270, 484, 882
ApeKI	GCWGC	3 cut(s)	194, 197, 1160
ApoI	RAATTY	6 cut(s)	131, 170, 353, 715, 1016, 1240
AseI	ATTAAT	2 cut(s)	1065, 1185
AspS9I	GGNCC	3 cut(s)	362, 452, 484
AsuHPI	GGTGA	4 cut(s)	35, 167, 1214, 1262
AvaI	CYCGRG	1 cut(s)	455
AvaII	GGWCC	2 cut(s)	362, 452
BaeGI	GKGCMC	1 cut(s)	1114
BalI	TGGCCA	1 cut(s)	272
BanI	GGYRCC	1 cut(s)	1109
BarI	GAAGNNNNNNTAC	2 cut(s)	1086, 1118
BbsI	GAAGAC	2 cut(s)	732, 1101
BbvI	GCAGC	3 cut(s)	184, 206, 1147
BccI	CCATC	4 cut(s)	140, 152, 1139, 1208
BceAI	ACGGC	1 cut(s)	1148
BciT130I	CCWGG	1 cut(s)	1248
BcoDI	GTCTC	5 cut(s)	224, 242, 448, 639, 1292
BfaI	CTAG	4 cut(s)	60, 440, 708, 1070
BfmI	CTRYAG	1 cut(s)	192
BglII	AGATCT	1 cut(s)	402
BisI	GCNGC	3 cut(s)	195, 198, 1161
BlpI	GCTNAGC	1 cut(s)	954
BlsI	GCNGC	3 cut(s)	196, 199, 1162
Bme1390I	CCNGG	1 cut(s)	1248
Bme18I	GGWCC	2 cut(s)	362, 452
BmeT110I	CYCGRG	1 cut(s)	455
BmgT120I	GGNCC	3 cut(s)	362, 452, 484
BmiI	GGNNCC	5 cut(s)	454, 485, 640, 1044, 1111
BmrFI	CCNGG	1 cut(s)	1248
BmrI	ACTGGG	1 cut(s)	490
BmuI	ACTGGG	1 cut(s)	490
BpiI	GAAGAC	2 cut(s)	732, 1101
BpmI	CTGGAG	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	1219
Bpu1102I	GCTNAGC	1 cut(s)	954
BpuEI	CTTGAG	1 cut(s)	266
BsaBI	GATNNNNATC	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	3 cut(s)	730, 1164, 1246
BsaWI	WCCGGW	2 cut(s)	260, 942
BsaXI	ACNNNNNCTCC	2 cut(s)	765, 795
Bsc4I	CCNNNNNNNGG	4 cut(s)	379, 482, 736, 1105
Bse1I	ACTGG	4 cut(s)	256, 373, 485, 1029
Bse8I	GATNNNNATC	1 cut(s)	387
BseAI	TCCGGA	2 cut(s)	260, 942
BseBI	CCWGG	1 cut(s)	1248
BseDI	CCNNGG	3 cut(s)	730, 1164, 1246
BseGI	GGATG	6 cut(s)	55, 106, 913, 1141, 1178, 1340
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	4 cut(s)	379, 482, 736, 1105
BseMII	CTCAG	5 cut(s)	207, 891, 945, 1233, 1287
BseNI	ACTGG	4 cut(s)	256, 373, 485, 1029
BseRI	GAGGAG	3 cut(s)	420, 791, 1055
BseSI	GKGCMC	1 cut(s)	1114
BseXI	GCAGC	3 cut(s)	184, 206, 1147
BseYI	CCCAGC	1 cut(s)	1235
BshFI	GGCC	3 cut(s)	272, 486, 884
BshNI	GGYRCC	1 cut(s)	1109
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	2 cut(s)	261, 943
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	4 cut(s)	379, 482, 736, 1105
BsmAI	GTCTC	5 cut(s)	224, 242, 448, 639, 1292
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	3 cut(s)	272, 486, 884
Bso31I	GGTCTC	1 cut(s)	224
BsoBI	CYCGRG	1 cut(s)	455
Bsp1286I	GDGCHC	1 cut(s)	1114
Bsp13I	TCCGGA	2 cut(s)	260, 942
Bsp143I	GATC	5 cut(s)	14, 317, 402, 970, 1262
Bsp1720I	GCTNAGC	1 cut(s)	954
BspACI	CCGC	2 cut(s)	1133, 1310
BspANI	GGCC	3 cut(s)	272, 486, 884
BspCNI	CTCAG	5 cut(s)	208, 890, 946, 1232, 1288
BspEI	TCCGGA	2 cut(s)	260, 942
BspLI	GGNNCC	5 cut(s)	454, 485, 640, 1044, 1111
BspMAI	CTGCAG	1 cut(s)	196
BspPI	GGATC	3 cut(s)	312, 965, 1257
BspT107I	GGYRCC	1 cut(s)	1109
BspTNI	GGTCTC	1 cut(s)	224
BsrBI	CCGCTC	1 cut(s)	1310
BsrI	ACTGG	4 cut(s)	256, 373, 485, 1029
BssECI	CCNNGG	3 cut(s)	730, 1164, 1246
BssMI	GATC	5 cut(s)	14, 317, 402, 970, 1262
BssT1I	CCWWGG	1 cut(s)	730
Bst2UI	CCWGG	1 cut(s)	1248
Bst4CI	ACNGT	3 cut(s)	296, 653, 1364
Bst6I	CTCTTC	2 cut(s)	744, 795
BstAPI	GCANNNNNTGC	1 cut(s)	1232
BstC8I	GCNNGC	2 cut(s)	87, 951
BstDEI	CTNAG	5 cut(s)	216, 877, 954, 1219, 1296
BstDSI	CCRYGG	1 cut(s)	1164
BstENI	CCTNNNNNAGG	1 cut(s)	734
BstF5I	GGATG	6 cut(s)	55, 106, 913, 1141, 1178, 1340
BstKTI	GATC	5 cut(s)	17, 320, 405, 973, 1265
BstMAI	GTCTC	5 cut(s)	224, 242, 448, 639, 1292
BstMBI	GATC	5 cut(s)	14, 317, 402, 970, 1262
BstMWI	GCNNNNNNNGC	3 cut(s)	946, 955, 1232
BstNI	CCWGG	1 cut(s)	1248
BstSCI	CCNGG	1 cut(s)	1246
BstSFI	CTRYAG	1 cut(s)	192
BstSLI	GKGCMC	1 cut(s)	1114
BstV1I	GCAGC	3 cut(s)	184, 206, 1147
BstV2I	GAAGAC	2 cut(s)	732, 1101
BstX2I	RGATCY	3 cut(s)	317, 402, 1262
BstYI	RGATCY	3 cut(s)	317, 402, 1262
BsuRI	GGCC	3 cut(s)	272, 486, 884
BtgI	CCRYGG	1 cut(s)	1164
BtsCI	GGATG	6 cut(s)	55, 106, 913, 1141, 1178, 1340
BtsIMutI	CAGTG	3 cut(s)	885, 981, 1266
Cac8I	GCNNGC	2 cut(s)	87, 951
CaiI	CAGNNNCTG	1 cut(s)	674
Cfr13I	GGNCC	3 cut(s)	362, 452, 484
CseI	GACGC	1 cut(s)	713
CviAII	CATG	6 cut(s)	208, 268, 488, 536, 821, 1232
DdeI	CTNAG	5 cut(s)	216, 877, 954, 1219, 1296
DpnI	GATC	5 cut(s)	16, 319, 404, 972, 1264
DpnII	GATC	5 cut(s)	14, 317, 402, 970, 1262
DraI	TTTAAA	1 cut(s)	1288
EaeI	YGGCCR	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	744, 795
EarI	CTCTTC	2 cut(s)	744, 795
Eco130I	CCWWGG	1 cut(s)	730
Eco31I	GGTCTC	1 cut(s)	224
Eco47I	GGWCC	2 cut(s)	362, 452
Eco57I	CTGAAG	1 cut(s)	489
Eco88I	CYCGRG	1 cut(s)	455
EcoNI	CCTNNNNNAGG	1 cut(s)	734
EcoRI	GAATTC	1 cut(s)	1240
EcoRII	CCWGG	1 cut(s)	1246
EcoT14I	CCWWGG	1 cut(s)	730
ErhI	CCWWGG	1 cut(s)	730
FaeI	CATG	6 cut(s)	211, 271, 491, 539, 824, 1235
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	6 cut(s)	207, 267, 487, 535, 820, 1231
FauNDI	CATATG	1 cut(s)	94
Fnu4HI	GCNGC	3 cut(s)	195, 198, 1161
FokI	GGATG	6 cut(s)	42, 113, 920, 1148, 1185, 1327
Fsp4HI	GCNGC	3 cut(s)	195, 198, 1161
FspBI	CTAG	4 cut(s)	60, 440, 708, 1070
GluI	GCNGC	3 cut(s)	195, 198, 1161
GsaI	CCCAGC	1 cut(s)	1239
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	3 cut(s)	272, 486, 884
HapII	CCGG	2 cut(s)	261, 943
HgaI	GACGC	1 cut(s)	713
Hin1II	CATG	6 cut(s)	211, 271, 491, 539, 824, 1235
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HindIII	AAGCTT	1 cut(s)	465
HinfI	GANTC	4 cut(s)	323, 665, 1271, 1331
HpaII	CCGG	2 cut(s)	261, 943
HphI	GGTGA	4 cut(s)	35, 167, 1214, 1262
Hpy166II	GTNNAC	3 cut(s)	289, 370, 497
Hpy188I	TCNGA	7 cut(s)	322, 328, 397, 508, 689, 1172, 1297
Hpy188III	TCNNGA	9 cut(s)	143, 176, 261, 476, 894, 943, 1070, 1221, 1325
Hpy8I	GTNNAC	3 cut(s)	289, 370, 497
HpyAV	CCTTC	3 cut(s)	176, 180, 900
HpyCH4III	ACNGT	3 cut(s)	296, 653, 1364
HpyCH4IV	ACGT	1 cut(s)	541
HpyCH4V	TGCA	8 cut(s)	194, 200, 614, 785, 845, 1006, 1176, 1338
HpyF10VI	GCNNNNNNNGC	3 cut(s)	946, 955, 1232
HpyF3I	CTNAG	5 cut(s)	216, 877, 954, 1219, 1296
HpySE526I	ACGT	1 cut(s)	541
Hsp92II	CATG	6 cut(s)	211, 271, 491, 539, 824, 1235
Kpn2I	TCCGGA	2 cut(s)	260, 942
Kzo9I	GATC	5 cut(s)	14, 317, 402, 970, 1262
LmnI	GCTCC	6 cut(s)	94, 638, 739, 945, 1042, 1223
Lsp1109I	GCAGC	3 cut(s)	184, 206, 1147
MaeI	CTAG	4 cut(s)	60, 440, 708, 1070
MaeII	ACGT	1 cut(s)	541
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	5 cut(s)	16, 319, 404, 972, 1264
MbiI	CCGCTC	1 cut(s)	1310
MboI	GATC	5 cut(s)	14, 317, 402, 970, 1262
MboII	GAAGA	7 cut(s)	641, 737, 761, 812, 818, 1106, 1139
MflI	RGATCY	3 cut(s)	317, 402, 1262
MhlI	GDGCHC	1 cut(s)	1114
MlsI	TGGCCA	1 cut(s)	272
MluCI	AATT	6 cut(s)	131, 170, 353, 715, 1016, 1240
MluNI	TGGCCA	1 cut(s)	272
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	2 cut(s)	430, 1150
Mox20I	TGGCCA	1 cut(s)	272
MroI	TCCGGA	2 cut(s)	260, 942
MscI	TGGCCA	1 cut(s)	272
MseI	TTAA	7 cut(s)	6, 719, 927, 1065, 1185, 1287, 1366
MslI	CAYNNNNRTG	3 cut(s)	78, 114, 906
Msp20I	TGGCCA	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	2 cut(s)	261, 943
MspR9I	CCNGG	1 cut(s)	1248
MvaI	CCWGG	1 cut(s)	1248
MwoI	GCNNNNNNNGC	3 cut(s)	946, 955, 1232
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	5 cut(s)	14, 317, 402, 970, 1262
NlaIII	CATG	6 cut(s)	211, 271, 491, 539, 824, 1235
NlaIV	GGNNCC	5 cut(s)	454, 485, 640, 1044, 1111
NmeAIII	GCCGAG	1 cut(s)	1255
NmuCI	GTSAC	1 cut(s)	220
PcsI	WCGNNNNNNNCGW	1 cut(s)	1161
PfeI	GAWTC	3 cut(s)	665, 1271, 1331
PkrI	GCNGC	3 cut(s)	196, 199, 1162
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
PshBI	ATTAAT	2 cut(s)	1065, 1185
Psp6I	CCWGG	1 cut(s)	1246
PspFI	CCCAGC	1 cut(s)	1235
PspGI	CCWGG	1 cut(s)	1246
PspN4I	GGNNCC	5 cut(s)	454, 485, 640, 1044, 1111
PspPI	GGNCC	3 cut(s)	362, 452, 484
PstI	CTGCAG	1 cut(s)	196
PstNI	CAGNNNCTG	1 cut(s)	674
PsuI	RGATCY	3 cut(s)	317, 402, 1262
PvuII	CAGCTG	1 cut(s)	197
RseI	CAYNNNNRTG	3 cut(s)	78, 114, 906
SaqAI	TTAA	7 cut(s)	6, 719, 927, 1065, 1185, 1287, 1366
SatI	GCNGC	3 cut(s)	195, 198, 1161
Sau3AI	GATC	5 cut(s)	14, 317, 402, 970, 1262
Sau96I	GGNCC	3 cut(s)	362, 452, 484
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	1248
SduI	GDGCHC	1 cut(s)	1114
SfcI	CTRYAG	1 cut(s)	192
SinI	GGWCC	2 cut(s)	362, 452
SmiMI	CAYNNNNRTG	3 cut(s)	78, 114, 906
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	6 cut(s)	131, 170, 353, 715, 1016, 1240
SsiI	CCGC	2 cut(s)	1133, 1310
SspI	AATATT	1 cut(s)	278
SspMI	CTAG	4 cut(s)	60, 440, 708, 1070
StyD4I	CCNGG	1 cut(s)	1246
StyI	CCWWGG	1 cut(s)	730
TaaI	ACNGT	3 cut(s)	296, 653, 1364
TaiI	ACGT	1 cut(s)	544
TasI	AATT	6 cut(s)	131, 170, 353, 715, 1016, 1240
TfiI	GAWTC	3 cut(s)	665, 1271, 1331
Tru1I	TTAA	7 cut(s)	6, 719, 927, 1065, 1185, 1287, 1366
Tru9I	TTAA	7 cut(s)	6, 719, 927, 1065, 1185, 1287, 1366
TscAI	CASTG	3 cut(s)	885, 988, 1273
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	3 cut(s)	194, 197, 1160
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	4 cut(s)	98, 330, 399, 552
TspRI	CASTG	3 cut(s)	885, 988, 1273
VpaK11BI	GGWCC	2 cut(s)	362, 452
VspI	ATTAAT	2 cut(s)	1065, 1185
XagI	CCTNNNNNAGG	1 cut(s)	734
XapI	RAATTY	6 cut(s)	131, 170, 353, 715, 1016, 1240
XbaI	TCTAGA	1 cut(s)	1069
XspI	CTAG	4 cut(s)	60, 440, 708, 1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.