Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007524

Physical Location & Seq

Genomic Coordinates Forward (+)

75046845 .. 75050463

Gene Structure 3619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG570700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGTGGCTTCACTTGCAGGACAAAATGATTAACAAACGATCTTTTGGTGATGAGGGTTCTTTTGAGGTTGCTTGTAAGCACCCTAGACATTTGGAACACTATAATGAGCCTGCTCCATATGTGGATGTTTTTCATTTTAGTGATGCTTCCCAGAAATTTCAAACTCCAGATGGCAAAGGTGACGGGAGTTGTAAATTTCAAGAGGAAGGAAGGTCTGCAGCTGCAAGGGACATGGCAACTGAAGTCACAAATGAGACCTACAAAGAACTTGAGACTGGTGCTTCCGGAAGCATGGCCAAATGTTTGTGGGTCAACAACAGTATTGTTGAAGCTAATGTAAGATCCGAGTCAGAAGCTCATCTTTCATTGTTCCCAGAATTTTTTGGACCTGTAAACCAATTGAGGGATATACATCATTCTGACAAGATCTGTTCATCTCCTGTTGATTATTCTCCTCATTACCTAGTCTCTGTTGGACCCGAGCATCAAGCTTATGTTCCAGACTGCGGCCATGAGGGTTCACACACTTCAGAACATGAACGTCCTTTGGGTGTTGATGAGGAAAAGCTAATGGGTACCTGTGTCCTTTCTATGCCTGACCTTGAAGCATCTGCAAACTTTTGCTGTGAGGGAGCCAGAGACAACTGTATGTGTGCTGATTCAGGTTCTGTAAGATGTGTCAGACAGCACATCACAGACGGTAGAAAGAAATTAAGGGAAGACCTTGGGCAGGAGCTTTTTGAAGAGTTGGGCTTTTGTGATATGGGAGAGGAGGTTGCAGATAAATGGAGTGAAGAGGAAGAGCATCTGTTCCATGATGTTGTCCTCTCTAACCCTGCATCACTGGGTAAGAACTTCTGGCATAATCTCTCAGTGGCCTTTCCTTCACGAACGCATAGGGATGTTGTCAGCTATTATTTTAATGTGTTTATGCTCCGGAGGCGTGCTGAACAGAATAGGTTTGATCCTCTAAACACTGATAGTGATGATGATGAGTTGCAAAAAAGTGAATTTGGACTGGTAGAGGATAATGAGGAGCCTGTGGTAGTATCTCCTATTAATCTAGATGCTTCTGCCTATAATGAGGAAGACCACTTACGGGGTGCCCAAGTATACATTGAAGATGCGGATGACATAGATGGTTATGACGATGCTGCCGTGGTCGGATGCAAAGGTATTAATGACAATGAGGGGGGTGATATAGATGATGGCTCAGGAGCCTCTCATGCTGGGAATTTCCCTGGTGATTGTGGCAGATCCACTGAATCTCGGCTTTTGTTTAAAACTTCTGAGACTGTTAGAGCAGATTATGATATTCAAGATGATTCTTGCACATCCTATGACTATCAGCAAGACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

453

Amino Acids

50.67

Weight (kDa)

4.53

Isoelectric Point (pI)

53.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47220 FvH4_6g47220 FvH4_6g47220
malus_domestica	MD00G1156000.v1.1 MD09G1062800.v1.1 MD17G1056700.v1.1
prunus_persica	Prupe.3G257400_v2.0.a1 Prupe.3G257400_v2.0.a1 Prupe.3G257400_v2.0.a1
pyrus_communis	pycom111g05320 pycom17g05680
rosa_chinensis	RchiOBHm_Chr2g0166271
rosa_laevigata	RLG00000021602
rosa_multiflora	Rmu_sc0016751.1_g000008 Rmu_sc0023080.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085030
rosa_rugosa	Rorug02G0521700 Rorug02G0521800
rosa_samantha	Rh2AG587800 Rh2BG599800 Rh2CG570100 Rh2CG570700 Rh2DG610000
rosa_wichuraiana	Rw0G003910 Rw2G048990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	575
AccB1I	GGYRCC	2 cut(s)	575, 1103
AccI	GTMKAC	1 cut(s)	1113
AccIII	TCCGGA	2 cut(s)	284, 936
AciI	CCGC	2 cut(s)	507, 1127
AclWI	GGATC	3 cut(s)	336, 959, 1251
AcoI	YGGCCR	2 cut(s)	294, 508
AcsI	RAATTY	5 cut(s)	155, 194, 377, 1010, 1234
AcuI	CTGAAG	2 cut(s)	261, 513
AfaI	GTAC	1 cut(s)	577
AfiI	CCNNNNNNNGG	4 cut(s)	403, 506, 730, 1099
AgsI	TTSAA	7 cut(s)	161, 200, 329, 605, 743, 1121, 1319
AjnI	CCWGG	1 cut(s)	1240
AluBI	AGCT	7 cut(s)	221, 332, 356, 491, 568, 736, 912
AluI	AGCT	7 cut(s)	221, 332, 356, 491, 568, 736, 912
Alw26I	GTCTC	5 cut(s)	248, 266, 472, 633, 1286
AlwI	GGATC	3 cut(s)	336, 959, 1251
AlwNI	CAGNNNCTG	1 cut(s)	668
Ama87I	CYCGRG	1 cut(s)	479
Aor13HI	TCCGGA	2 cut(s)	284, 936
AoxI	GGCC	3 cut(s)	294, 508, 876
ApeKI	GCWGC	3 cut(s)	218, 221, 1154
ApoI	RAATTY	5 cut(s)	155, 194, 377, 1010, 1234
AseI	ATTAAT	2 cut(s)	1059, 1179
Asp718I	GGTACC	1 cut(s)	575
AspS9I	GGNCC	2 cut(s)	386, 476
AsuHPI	GGTGA	4 cut(s)	59, 191, 1208, 1256
AvaI	CYCGRG	1 cut(s)	479
AvaII	GGWCC	2 cut(s)	386, 476
BaeGI	GKGCMC	1 cut(s)	1108
BaeI	ACNNNNGTAYC	2 cut(s)	567, 600
BalI	TGGCCA	1 cut(s)	296
BanI	GGYRCC	2 cut(s)	575, 1103
BarI	GAAGNNNNNNTAC	2 cut(s)	1080, 1112
BbsI	GAAGAC	2 cut(s)	726, 1095
BbvI	GCAGC	3 cut(s)	208, 230, 1141
BccI	CCATC	3 cut(s)	164, 1133, 1202
BceAI	ACGGC	1 cut(s)	1142
BciT130I	CCWGG	1 cut(s)	1242
BcoDI	GTCTC	5 cut(s)	248, 266, 472, 633, 1286
BfaI	CTAG	3 cut(s)	84, 464, 1064
BfmI	CTRYAG	1 cut(s)	216
BglII	AGATCT	1 cut(s)	426
BisI	GCNGC	4 cut(s)	219, 222, 508, 1155
BlsI	GCNGC	4 cut(s)	220, 223, 509, 1156
Bme1390I	CCNGG	1 cut(s)	1242
Bme18I	GGWCC	2 cut(s)	386, 476
BmeT110I	CYCGRG	1 cut(s)	479
BmgT120I	GGNCC	2 cut(s)	386, 476
BmiI	GGNNCC	6 cut(s)	478, 577, 634, 1038, 1105, 1219
BmrFI	CCNGG	1 cut(s)	1242
BmrI	ACTGGG	1 cut(s)	854
BmsI	GCATC	9 cut(s)	133, 493, 617, 814, 848, 1057, 1114, 1141, 1157
BmuI	ACTGGG	1 cut(s)	854
BpiI	GAAGAC	2 cut(s)	726, 1095
BpmI	CTGGAG	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	1213
BpuEI	CTTGAG	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	411
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	3 cut(s)	724, 1158, 1240
BsaWI	WCCGGW	2 cut(s)	284, 936
BsaXI	ACNNNNNCTCC	2 cut(s)	759, 789
Bsc4I	CCNNNNNNNGG	4 cut(s)	403, 506, 730, 1099
Bse1I	ACTGG	3 cut(s)	280, 849, 1023
Bse8I	GATNNNNATC	1 cut(s)	411
BseAI	TCCGGA	2 cut(s)	284, 936
BseBI	CCWGG	1 cut(s)	1242
BseDI	CCNNGG	3 cut(s)	724, 1158, 1240
BseGI	GGATG	5 cut(s)	130, 907, 1135, 1172, 1334
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	4 cut(s)	403, 506, 730, 1099
BseMII	CTCAG	3 cut(s)	885, 1227, 1281
BseNI	ACTGG	3 cut(s)	280, 849, 1023
BseRI	GAGGAG	3 cut(s)	444, 785, 1049
BseSI	GKGCMC	1 cut(s)	1108
BseXI	GCAGC	3 cut(s)	208, 230, 1141
BseYI	CCCAGC	1 cut(s)	1229
BshFI	GGCC	3 cut(s)	296, 510, 878
BshNI	GGYRCC	2 cut(s)	575, 1103
BsiHKCI	CYCGRG	1 cut(s)	479
BsiSI	CCGG	2 cut(s)	285, 937
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	4 cut(s)	403, 506, 730, 1099
BsmAI	GTCTC	5 cut(s)	248, 266, 472, 633, 1286
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	3 cut(s)	296, 510, 878
Bso31I	GGTCTC	1 cut(s)	248
BsoBI	CYCGRG	1 cut(s)	479
Bsp1286I	GDGCHC	1 cut(s)	1108
Bsp13I	TCCGGA	2 cut(s)	284, 936
Bsp143I	GATC	5 cut(s)	38, 341, 426, 964, 1256
BspACI	CCGC	2 cut(s)	507, 1127
BspANI	GGCC	3 cut(s)	296, 510, 878
BspCNI	CTCAG	3 cut(s)	884, 1226, 1282
BspEI	TCCGGA	2 cut(s)	284, 936
BspLI	GGNNCC	6 cut(s)	478, 577, 634, 1038, 1105, 1219
BspMAI	CTGCAG	1 cut(s)	220
BspPI	GGATC	3 cut(s)	336, 959, 1251
BspQI	GCTCTTC	1 cut(s)	795
BspT107I	GGYRCC	2 cut(s)	575, 1103
BspTNI	GGTCTC	1 cut(s)	248
BsrI	ACTGG	3 cut(s)	280, 849, 1023
BssECI	CCNNGG	3 cut(s)	724, 1158, 1240
BssMI	GATC	5 cut(s)	38, 341, 426, 964, 1256
BssNAI	GTATAC	1 cut(s)	1114
BssT1I	CCWWGG	1 cut(s)	724
Bst1107I	GTATAC	1 cut(s)	1114
Bst2UI	CCWGG	1 cut(s)	1242
Bst4CI	ACNGT	5 cut(s)	320, 647, 701, 1297, 1358
Bst6I	CTCTTC	3 cut(s)	738, 789, 795
BstC8I	GCNNGC	2 cut(s)	111, 945
BstDEI	CTNAG	3 cut(s)	871, 1213, 1290
BstDSI	CCRYGG	1 cut(s)	1158
BstENI	CCTNNNNNAGG	1 cut(s)	728
BstF5I	GGATG	5 cut(s)	130, 907, 1135, 1172, 1334
BstKTI	GATC	5 cut(s)	41, 344, 429, 967, 1259
BstMAI	GTCTC	5 cut(s)	248, 266, 472, 633, 1286
BstMBI	GATC	5 cut(s)	38, 341, 426, 964, 1256
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 940, 1226
BstNI	CCWGG	1 cut(s)	1242
BstSCI	CCNGG	1 cut(s)	1240
BstSFI	CTRYAG	1 cut(s)	216
BstSLI	GKGCMC	1 cut(s)	1108
BstV1I	GCAGC	3 cut(s)	208, 230, 1141
BstV2I	GAAGAC	2 cut(s)	726, 1095
BstX2I	RGATCY	3 cut(s)	341, 426, 1256
BstYI	RGATCY	3 cut(s)	341, 426, 1256
BstZ17I	GTATAC	1 cut(s)	1114
BsuRI	GGCC	3 cut(s)	296, 510, 878
BtgI	CCRYGG	1 cut(s)	1158
BtsCI	GGATG	5 cut(s)	130, 907, 1135, 1172, 1334
BtsIMutI	CAGTG	4 cut(s)	842, 879, 975, 1260
Cac8I	GCNNGC	2 cut(s)	111, 945
CaiI	CAGNNNCTG	1 cut(s)	668
Cfr13I	GGNCC	2 cut(s)	386, 476
Csp6I	GTAC	1 cut(s)	576
CviAII	CATG	6 cut(s)	232, 292, 512, 536, 815, 1226
CviQI	GTAC	1 cut(s)	576
DdeI	CTNAG	3 cut(s)	871, 1213, 1290
DpnI	GATC	5 cut(s)	40, 343, 428, 966, 1258
DpnII	GATC	5 cut(s)	38, 341, 426, 964, 1256
DraI	TTTAAA	1 cut(s)	1282
EaeI	YGGCCR	2 cut(s)	294, 508
Eam1104I	CTCTTC	3 cut(s)	738, 789, 795
EarI	CTCTTC	3 cut(s)	738, 789, 795
Eco130I	CCWWGG	1 cut(s)	724
Eco31I	GGTCTC	1 cut(s)	248
Eco47I	GGWCC	2 cut(s)	386, 476
Eco57I	CTGAAG	2 cut(s)	261, 513
Eco88I	CYCGRG	1 cut(s)	479
EcoNI	CCTNNNNNAGG	1 cut(s)	728
EcoRII	CCWGG	1 cut(s)	1240
EcoT14I	CCWWGG	1 cut(s)	724
ErhI	CCWWGG	1 cut(s)	724
FaeI	CATG	6 cut(s)	235, 295, 515, 539, 818, 1229
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	6 cut(s)	231, 291, 511, 535, 814, 1225
FauNDI	CATATG	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	1113
Fnu4HI	GCNGC	4 cut(s)	219, 222, 508, 1155
FokI	GGATG	5 cut(s)	137, 914, 1142, 1179, 1321
Fsp4HI	GCNGC	4 cut(s)	219, 222, 508, 1155
FspBI	CTAG	3 cut(s)	84, 464, 1064
GluI	GCNGC	4 cut(s)	219, 222, 508, 1155
GsaI	CCCAGC	1 cut(s)	1233
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	3 cut(s)	296, 510, 878
HapII	CCGG	2 cut(s)	285, 937
Hin1II	CATG	6 cut(s)	235, 295, 515, 539, 818, 1229
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	4 cut(s)	347, 659, 1265, 1325
HpaII	CCGG	2 cut(s)	285, 937
HphI	GGTGA	4 cut(s)	59, 191, 1208, 1256
Hpy166II	GTNNAC	4 cut(s)	313, 394, 521, 1114
Hpy188I	TCNGA	7 cut(s)	346, 352, 421, 532, 683, 1166, 1291
Hpy188III	TCNNGA	9 cut(s)	167, 200, 285, 500, 888, 937, 1064, 1215, 1319
Hpy8I	GTNNAC	4 cut(s)	313, 394, 521, 1114
HpyAV	CCTTC	3 cut(s)	200, 204, 894
HpyCH4III	ACNGT	5 cut(s)	320, 647, 701, 1297, 1358
HpyCH4IV	ACGT	1 cut(s)	541
HpyCH4V	TGCA	9 cut(s)	16, 218, 224, 614, 779, 839, 1000, 1170, 1332
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 940, 1226
HpyF3I	CTNAG	3 cut(s)	871, 1213, 1290
HpySE526I	ACGT	1 cut(s)	541
Hsp92II	CATG	6 cut(s)	235, 295, 515, 539, 818, 1229
Kpn2I	TCCGGA	2 cut(s)	284, 936
KpnI	GGTACC	1 cut(s)	579
Kzo9I	GATC	5 cut(s)	38, 341, 426, 964, 1256
LguI	GCTCTTC	1 cut(s)	795
LmnI	GCTCC	6 cut(s)	118, 632, 733, 939, 1036, 1217
Lsp1109I	GCAGC	3 cut(s)	208, 230, 1141
LweI	GCATC	9 cut(s)	133, 493, 617, 814, 848, 1057, 1114, 1141, 1157
MaeI	CTAG	3 cut(s)	84, 464, 1064
MaeII	ACGT	1 cut(s)	541
MaeIII	GTNAC	2 cut(s)	179, 244
MalI	GATC	5 cut(s)	40, 343, 428, 966, 1258
MboI	GATC	5 cut(s)	38, 341, 426, 964, 1256
MboII	GAAGA	6 cut(s)	731, 755, 806, 812, 1100, 1133
MfeI	CAATTG	1 cut(s)	398
MflI	RGATCY	3 cut(s)	341, 426, 1256
MhlI	GDGCHC	1 cut(s)	1108
MlsI	TGGCCA	1 cut(s)	296
MluCI	AATT	7 cut(s)	155, 194, 377, 398, 710, 1010, 1234
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	2 cut(s)	454, 1144
Mox20I	TGGCCA	1 cut(s)	296
MroI	TCCGGA	2 cut(s)	284, 936
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	7 cut(s)	30, 713, 921, 1059, 1179, 1281, 1360
MslI	CAYNNNNRTG	3 cut(s)	102, 138, 900
Msp20I	TGGCCA	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	2 cut(s)	285, 937
MspR9I	CCNGG	1 cut(s)	1242
MunI	CAATTG	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	1242
MwoI	GCNNNNNNNGC	3 cut(s)	13, 940, 1226
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	5 cut(s)	38, 341, 426, 964, 1256
NlaIII	CATG	6 cut(s)	235, 295, 515, 539, 818, 1229
NlaIV	GGNNCC	6 cut(s)	478, 577, 634, 1038, 1105, 1219
NmeAIII	GCCGAG	1 cut(s)	1249
NmuCI	GTSAC	2 cut(s)	179, 244
PciSI	GCTCTTC	1 cut(s)	795
PcsI	WCGNNNNNNNCGW	1 cut(s)	1155
PfeI	GAWTC	3 cut(s)	659, 1265, 1325
PkrI	GCNGC	4 cut(s)	220, 223, 509, 1156
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
PshBI	ATTAAT	2 cut(s)	1059, 1179
Psp6I	CCWGG	1 cut(s)	1240
PspFI	CCCAGC	1 cut(s)	1229
PspGI	CCWGG	1 cut(s)	1240
PspN4I	GGNNCC	6 cut(s)	478, 577, 634, 1038, 1105, 1219
PspPI	GGNCC	2 cut(s)	386, 476
PstI	CTGCAG	1 cut(s)	220
PstNI	CAGNNNCTG	1 cut(s)	668
PsuI	RGATCY	3 cut(s)	341, 426, 1256
PvuII	CAGCTG	1 cut(s)	221
RsaI	GTAC	1 cut(s)	577
RsaNI	GTAC	1 cut(s)	576
RseI	CAYNNNNRTG	3 cut(s)	102, 138, 900
SapI	GCTCTTC	1 cut(s)	795
SaqAI	TTAA	7 cut(s)	30, 713, 921, 1059, 1179, 1281, 1360
SatI	GCNGC	4 cut(s)	219, 222, 508, 1155
Sau3AI	GATC	5 cut(s)	38, 341, 426, 964, 1256
Sau96I	GGNCC	2 cut(s)	386, 476
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	1 cut(s)	1242
SduI	GDGCHC	1 cut(s)	1108
SfaNI	GCATC	9 cut(s)	133, 493, 617, 814, 848, 1057, 1114, 1141, 1157
SfcI	CTRYAG	1 cut(s)	216
SinI	GGWCC	2 cut(s)	386, 476
SmiMI	CAYNNNNRTG	3 cut(s)	102, 138, 900
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	7 cut(s)	155, 194, 377, 398, 710, 1010, 1234
SsiI	CCGC	2 cut(s)	507, 1127
SspMI	CTAG	3 cut(s)	84, 464, 1064
StyD4I	CCNGG	1 cut(s)	1240
StyI	CCWWGG	1 cut(s)	724
TaaI	ACNGT	5 cut(s)	320, 647, 701, 1297, 1358
TaiI	ACGT	1 cut(s)	544
TasI	AATT	7 cut(s)	155, 194, 377, 398, 710, 1010, 1234
TauI	GCSGC	1 cut(s)	510
TfiI	GAWTC	3 cut(s)	659, 1265, 1325
Tru1I	TTAA	7 cut(s)	30, 713, 921, 1059, 1179, 1281, 1360
Tru9I	TTAA	7 cut(s)	30, 713, 921, 1059, 1179, 1281, 1360
TscAI	CASTG	4 cut(s)	849, 879, 982, 1267
TseFI	GTSAC	2 cut(s)	179, 244
TseI	GCWGC	3 cut(s)	218, 221, 1154
Tsp45I	GTSAC	2 cut(s)	179, 244
TspDTI	ATGAA	4 cut(s)	122, 354, 423, 552
TspRI	CASTG	4 cut(s)	849, 879, 982, 1267
VpaK11BI	GGWCC	2 cut(s)	386, 476
VspI	ATTAAT	2 cut(s)	1059, 1179
XagI	CCTNNNNNAGG	1 cut(s)	728
XapI	RAATTY	5 cut(s)	155, 194, 377, 1010, 1234
XbaI	TCTAGA	1 cut(s)	1063
XmiI	GTMKAC	1 cut(s)	1113
XspI	CTAG	3 cut(s)	84, 464, 1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.