MD00G1156000.v1.1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0007524
Physical Location & Seq
Forward (+)
34404418 .. 34408076
3659 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1156000.v1.1.491

Sequence Viewer

Length: 1362 bp
ATGGTGACGATTCTTATGAGGTTGCTTGGAAGCACCCAAGACAATTGGAATACGCAAATGAGCCTGCTCCAATTGTGGATACTTTTCCTTTTAGTAGCGCCCCCCAGAAATTTCAAATTTCAGCTGGATGGTGAAGGTGATGGGAGTTTTAGTACATGTCCAGATGAAGGAGGGTTTGCAAGTGACTTGGGAACTGAAATCTCAAATGAGACCTATAGAGAACTTGAAAATGGTGCTTCTGGAAGCTTCTCTCGATTTTGGTTGGCCAACAACAGTTTGTTTGAAGCTCATGTAAGACCTGAGGCAGCAGGGCATCTGTCATTATTCCCAGAATTTTTTGCACCTGCAAACCATCGGAGGGCTTTACTTCATTCTAATGATATCTGCTTATCTCCTGTTGATTATCCTCCTCAAAAGCTAGTTTCTATCGGACCTCAGCATCAAGCTCATGTTCCAGAATGGGGCCATGAGGGTTCACACACTTCAGATCATCTGGAGAAATTGGATCCTCAGCATAAACTTTCATATGCTTCCGGCCAGGGCCTTGGTGTCGATGAGGTGAAGCTGATGGGTACCTGTATCATTTCTATGCCTGATCTTGAAGCATCTGAAAACTATTTATGTGAAGATACGGCAGCTAGAAACCACTGTATGTGTGCTGATGCAGGTTCTGTTAGATGTGTGAGACAGCATGTCCTGGAAGCAAGAGAGAAATTAAGGAAAGACCTTGGAGAGTGCCTATTTGAAGAGTTGGGATTTTATGAAATGGGAGACGAGGTTGCAGATAAATGGACTAAAGATGAAGAACATGCCTTCCATGATGCCATCCGTTCTAACCCTGCATCACTGGGTAAGAACTTCTGGCACCATCTTTCAGTGGCTTTTCCTTTGCGACCGCATAAAGACCTTGTCAGCTATTATTTCAATGTTTTCATGCTCCGTCAACGTGCTGAGCAGAATAGGTTTGACCCTCTAAACATTGATAGCGATGATGATGAGTGGCAAAAATGTGAACTTGGAGTGGTCGATGATGACGAGGACGCATTGGTGGAATCTCCTGTAAATCTAGATGCTCCTGCCTATAATCAGATAGAACATTTTGACAGTTTCAATGAACAAATTGAGGATGCTGATGACGTAGATGGTTGTAATGATAATGCCGATGTCGTTGGTTGTGCTGGAATTACGGACGAGGATGCAGGCGATATAGATGATGGCCCAGAATCTCATGCTGAGAATCCCCTTGGTGATTGTGGTGCTGCTGAAACTTGCGTTCTGGATAAAACTCCTAGCAGTAACAGAGAGGATTATGATATTGAAGATGATTCTTGCACATCATATGAGCATCAGCAAGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

454

Amino Acids

50.56

Weight (kDa)

4.38

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 352
Acc36I ACCTGC 2 cut(s) 352, 656
Acc65I GGTACC 1 cut(s) 572
AccB1I GGYRCC 2 cut(s) 572, 864
AciI CCGC 1 cut(s) 896
AclWI GGATC 2 cut(s) 500, 513
AcoI YGGCCR 2 cut(s) 264, 535
AcsI RAATTY 3 cut(s) 109, 116, 332
AcuI CTGAAG 1 cut(s) 468
AfaI GTAC 2 cut(s) 154, 574
AfiI CCNNNNNNNGG 3 cut(s) 167, 358, 461
AflIII ACRYGT 1 cut(s) 155
AgsI TTSAA 8 cut(s) 115, 227, 284, 602, 746, 925, 1111, 1319
AhdI GACNNNNNGTC 1 cut(s) 692
AjnI CCWGG 2 cut(s) 537, 696
AloI GAACNNNNNNTCC 2 cut(s) 798, 830
AluBI AGCT 8 cut(s) 124, 246, 287, 418, 446, 565, 638, 915
AluI AGCT 8 cut(s) 124, 246, 287, 418, 446, 565, 638, 915
Alw26I GTCTC 3 cut(s) 203, 679, 765
AlwI GGATC 2 cut(s) 500, 513
AlwNI CAGNNNCTG 1 cut(s) 671
AoxI GGCC 5 cut(s) 264, 463, 535, 541, 1216
ApeKI GCWGC 3 cut(s) 305, 635, 1259
ApoI RAATTY 3 cut(s) 109, 116, 332
Asp718I GGTACC 1 cut(s) 572
AspLEI GCGC 1 cut(s) 100
AspS9I GGNCC 4 cut(s) 431, 463, 541, 1217
AsuHPI GGTGA 5 cut(s) 16, 143, 149, 571, 1259
AvaII GGWCC 1 cut(s) 431
AxyI CCTNAGG 1 cut(s) 300
BalI TGGCCA 1 cut(s) 266
BamHI GGATCC 1 cut(s) 505
BanI GGYRCC 2 cut(s) 572, 864
BbvCI CCTCAGC 2 cut(s) 435, 510
BbvI GCAGC 3 cut(s) 317, 647, 1246
BccI CCATC 8 cut(s) 122, 134, 360, 562, 833, 876, 1136, 1208
BceAI ACGGC 1 cut(s) 648
BciT130I CCWGG 2 cut(s) 539, 698
BciVI GTATCC 1 cut(s) 72
BcoDI GTCTC 3 cut(s) 203, 679, 765
BfaI CTAG 4 cut(s) 419, 639, 1067, 1290
BfmI CTRYAG 1 cut(s) 214
BfoI RGCGCY 1 cut(s) 101
BfuAI ACCTGC 2 cut(s) 352, 656
BfuI GTATCC 1 cut(s) 72
BisI GCNGC 3 cut(s) 306, 636, 1260
BlpI GCTNAGC 1 cut(s) 951
BlsI GCNGC 3 cut(s) 307, 637, 1261
Bme1390I CCNGG 2 cut(s) 539, 698
Bme18I GGWCC 1 cut(s) 431
BmeRI GACNNNNNGTC 1 cut(s) 692
BmgT120I GGNCC 4 cut(s) 431, 463, 541, 1217
BmiI GGNNCC 4 cut(s) 464, 507, 574, 866
BmrFI CCNGG 2 cut(s) 539, 698
BmrI ACTGGG 1 cut(s) 857
BmuI ACTGGG 1 cut(s) 857
BpmI CTGGAG 1 cut(s) 515
Bpu10I CCTNAGC 2 cut(s) 435, 510
Bpu1102I GCTNAGC 1 cut(s) 951
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 4 cut(s) 538, 544, 727, 1243
BsaXI ACNNNNNCTCC 4 cut(s) 136, 166, 762, 792
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 358, 461
Bse1I ACTGG 1 cut(s) 852
Bse21I CCTNAGG 1 cut(s) 300
BseBI CCWGG 2 cut(s) 539, 698
BseDI CCNNGG 4 cut(s) 538, 544, 727, 1243
BseGI GGATG 4 cut(s) 133, 825, 1132, 1201
BseLI CCNNNNNNNGG 3 cut(s) 167, 358, 461
BseMII CTCAG 5 cut(s) 291, 449, 524, 942, 1224
BseNI ACTGG 1 cut(s) 852
BseRI GAGGAG 1 cut(s) 399
BseXI GCAGC 3 cut(s) 317, 647, 1246
Bsh1285I CGRYCG 1 cut(s) 896
BshFI GGCC 5 cut(s) 266, 465, 537, 543, 1218
BshNI GGYRCC 2 cut(s) 572, 864
BsiEI CGRYCG 1 cut(s) 896
BsiSI CCGG 1 cut(s) 534
BslI CCNNNNNNNGG 3 cut(s) 167, 358, 461
BsmAI GTCTC 3 cut(s) 203, 679, 765
BsmBI CGTCTC 1 cut(s) 765
BsnI GGCC 5 cut(s) 266, 465, 537, 543, 1218
Bso31I GGTCTC 1 cut(s) 203
Bsp143I GATC 3 cut(s) 487, 505, 595
Bsp1720I GCTNAGC 1 cut(s) 951
BspACI CCGC 1 cut(s) 896
BspANI GGCC 5 cut(s) 266, 465, 537, 543, 1218
BspCNI CTCAG 5 cut(s) 292, 448, 523, 943, 1225
BspLI GGNNCC 4 cut(s) 464, 507, 574, 866
BspMI ACCTGC 2 cut(s) 352, 656
BspPI GGATC 2 cut(s) 500, 513
BspT107I GGYRCC 2 cut(s) 572, 864
BspTNI GGTCTC 1 cut(s) 203
BsrI ACTGG 1 cut(s) 852
BssECI CCNNGG 4 cut(s) 538, 544, 727, 1243
BssMI GATC 3 cut(s) 487, 505, 595
BssT1I CCWWGG 3 cut(s) 544, 727, 1243
Bst2UI CCWGG 2 cut(s) 539, 698
Bst4CI ACNGT 3 cut(s) 275, 650, 1106
Bst6I CTCTTC 1 cut(s) 741
BstC8I GCNNGC 2 cut(s) 65, 1201
BstDEI CTNAG 5 cut(s) 300, 435, 510, 951, 1233
BstF5I GGATG 4 cut(s) 133, 825, 1132, 1201
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 3 cut(s) 490, 508, 598
BstMAI GTCTC 3 cut(s) 203, 679, 765
BstMBI GATC 3 cut(s) 487, 505, 595
BstMCI CGRYCG 1 cut(s) 896
BstNI CCWGG 2 cut(s) 539, 698
BstNSI RCATGY 3 cut(s) 159, 695, 812
BstSCI CCNGG 2 cut(s) 537, 696
BstSFI CTRYAG 1 cut(s) 214
BstV1I GCAGC 3 cut(s) 317, 647, 1246
BstX2I RGATCY 1 cut(s) 505
BstXI CCANNNNNNTGG 1 cut(s) 545
BstYI RGATCY 1 cut(s) 505
Bsu36I CCTNAGG 1 cut(s) 300
BsuI GTATCC 1 cut(s) 72
BsuRI GGCC 5 cut(s) 266, 465, 537, 543, 1218
BtgZI GCGATG 1 cut(s) 1002
BtsCI GGATG 4 cut(s) 133, 825, 1132, 1201
BtsIMutI CAGTG 3 cut(s) 646, 845, 882
BveI ACCTGC 2 cut(s) 352, 656
Cac8I GCNNGC 2 cut(s) 65, 1201
CaiI CAGNNNCTG 1 cut(s) 671
CfoI GCGC 1 cut(s) 100
Cfr13I GGNCC 4 cut(s) 431, 463, 541, 1217
CseI GACGC 1 cut(s) 1049
Csp6I GTAC 2 cut(s) 153, 573
CviAII CATG 9 cut(s) 156, 290, 449, 467, 692, 809, 818, 934, 1229
CviQI GTAC 2 cut(s) 153, 573
DdeI CTNAG 5 cut(s) 300, 435, 510, 951, 1233
DpnI GATC 3 cut(s) 489, 507, 597
DpnII GATC 3 cut(s) 487, 505, 595
DriI GACNNNNNGTC 1 cut(s) 692
EaeI YGGCCR 2 cut(s) 264, 535
Eam1104I CTCTTC 1 cut(s) 741
Eam1105I GACNNNNNGTC 1 cut(s) 692
EarI CTCTTC 1 cut(s) 741
Eco130I CCWWGG 3 cut(s) 544, 727, 1243
Eco31I GGTCTC 1 cut(s) 203
Eco32I GATATC 1 cut(s) 382
Eco47I GGWCC 1 cut(s) 431
Eco57I CTGAAG 1 cut(s) 468
Eco81I CCTNAGG 1 cut(s) 300
EcoO109I RGGNCCY 1 cut(s) 541
EcoRII CCWGG 2 cut(s) 537, 696
EcoRV GATATC 1 cut(s) 382
EcoT14I CCWWGG 3 cut(s) 544, 727, 1243
ErhI CCWWGG 3 cut(s) 544, 727, 1243
Esp3I CGTCTC 1 cut(s) 765
FaeI CATG 9 cut(s) 159, 293, 452, 470, 695, 812, 821, 937, 1232
FatI CATG 9 cut(s) 155, 289, 448, 466, 691, 808, 817, 933, 1228
FauNDI CATATG 2 cut(s) 526, 1339
Fnu4HI GCNGC 3 cut(s) 306, 636, 1260
FokI GGATG 4 cut(s) 140, 812, 1139, 1208
Fsp4HI GCNGC 3 cut(s) 306, 636, 1260
FspBI CTAG 4 cut(s) 419, 639, 1067, 1290
GlaI GCGC 1 cut(s) 99
GluI GCNGC 3 cut(s) 306, 636, 1260
GsuI CTGGAG 1 cut(s) 515
HaeII RGCGCY 1 cut(s) 101
HaeIII GGCC 5 cut(s) 266, 465, 537, 543, 1218
HapII CCGG 1 cut(s) 534
HgaI GACGC 1 cut(s) 1049
HhaI GCGC 1 cut(s) 100
Hin1II CATG 9 cut(s) 159, 293, 452, 470, 695, 812, 821, 937, 1232
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HincII GTYRAC 1 cut(s) 944
HindII GTYRAC 1 cut(s) 944
HindIII AAGCTT 1 cut(s) 244
HinfI GANTC 5 cut(s) 10, 1052, 1223, 1237, 1325
HpaII CCGG 1 cut(s) 534
HphI GGTGA 5 cut(s) 16, 143, 149, 571, 1259
Hpy166II GTNNAC 3 cut(s) 476, 944, 1013
Hpy188I TCNGA 5 cut(s) 357, 431, 487, 610, 1089
Hpy188III TCNNGA 8 cut(s) 161, 240, 252, 455, 494, 599, 1067, 1277
Hpy8I GTNNAC 3 cut(s) 476, 944, 1013
HpyAV CCTTC 3 cut(s) 128, 161, 823
HpyCH4III ACNGT 3 cut(s) 275, 650, 1106
HpyCH4IV ACGT 2 cut(s) 946, 1137
HpyCH4V TGCA 8 cut(s) 179, 341, 347, 665, 782, 842, 1199, 1332
HpyF3I CTNAG 5 cut(s) 300, 435, 510, 951, 1233
HpySE526I ACGT 2 cut(s) 946, 1137
Hsp92II CATG 9 cut(s) 159, 293, 452, 470, 695, 812, 821, 937, 1232
HspAI GCGC 1 cut(s) 98
KpnI GGTACC 1 cut(s) 576
Kzo9I GATC 3 cut(s) 487, 505, 595
LmnI GCTCC 3 cut(s) 72, 942, 1078
Lsp1109I GCAGC 3 cut(s) 317, 647, 1246
MaeI CTAG 4 cut(s) 419, 639, 1067, 1290
MaeII ACGT 2 cut(s) 946, 1137
MaeIII GTNAC 3 cut(s) 4, 182, 1295
MalI GATC 3 cut(s) 489, 507, 597
MboI GATC 3 cut(s) 487, 505, 595
MboII GAAGA 4 cut(s) 638, 758, 815, 1331
MfeI CAATTG 2 cut(s) 43, 71
MflI RGATCY 1 cut(s) 505
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 9 cut(s) 43, 71, 109, 116, 332, 500, 713, 1119, 1182
MluNI TGGCCA 1 cut(s) 266
Mox20I TGGCCA 1 cut(s) 266
MscI TGGCCA 1 cut(s) 266
MseI TTAA 1 cut(s) 716
MslI CAYNNNNRTG 2 cut(s) 375, 587
Msp20I TGGCCA 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 124
MspI CCGG 1 cut(s) 534
MspR9I CCNGG 2 cut(s) 539, 698
MunI CAATTG 2 cut(s) 43, 71
MvaI CCWGG 2 cut(s) 539, 698
NdeI CATATG 2 cut(s) 526, 1339
NdeII GATC 3 cut(s) 487, 505, 595
NlaIII CATG 9 cut(s) 159, 293, 452, 470, 695, 812, 821, 937, 1232
NlaIV GGNNCC 4 cut(s) 464, 507, 574, 866
NmuCI GTSAC 2 cut(s) 4, 182
NspI RCATGY 3 cut(s) 159, 695, 812
PaqCI CACCTGC 1 cut(s) 352
PciI ACATGT 1 cut(s) 155
PcsI WCGNNNNNNNCGW 1 cut(s) 1032
PfeI GAWTC 5 cut(s) 10, 1052, 1223, 1237, 1325
PflFI GACNNNGTC 1 cut(s) 908
PfoI TCCNGGA 1 cut(s) 696
PkrI GCNGC 3 cut(s) 307, 637, 1261
PscI ACATGT 1 cut(s) 155
Psp6I CCWGG 2 cut(s) 537, 696
PspGI CCWGG 2 cut(s) 537, 696
PspN4I GGNNCC 4 cut(s) 464, 507, 574, 866
PspPI GGNCC 4 cut(s) 431, 463, 541, 1217
PstNI CAGNNNCTG 1 cut(s) 671
PsuI RGATCY 1 cut(s) 505
PsyI GACNNNGTC 1 cut(s) 908
PvuII CAGCTG 1 cut(s) 124
RsaI GTAC 2 cut(s) 154, 574
RsaNI GTAC 2 cut(s) 153, 573
RseI CAYNNNNRTG 2 cut(s) 375, 587
SaqAI TTAA 1 cut(s) 716
SatI GCNGC 3 cut(s) 306, 636, 1260
Sau3AI GATC 3 cut(s) 487, 505, 595
Sau96I GGNCC 4 cut(s) 431, 463, 541, 1217
ScrFI CCNGG 2 cut(s) 539, 698
SfcI CTRYAG 1 cut(s) 214
SinI GGWCC 1 cut(s) 431
SmiMI CAYNNNNRTG 2 cut(s) 375, 587
Sse9I AATT 9 cut(s) 43, 71, 109, 116, 332, 500, 713, 1119, 1182
SsiI CCGC 1 cut(s) 896
SspMI CTAG 4 cut(s) 419, 639, 1067, 1290
StyD4I CCNGG 2 cut(s) 537, 696
StyI CCWWGG 3 cut(s) 544, 727, 1243
TaaI ACNGT 3 cut(s) 275, 650, 1106
TaiI ACGT 2 cut(s) 949, 1140
TaqI TCGA 3 cut(s) 253, 552, 1026
TasI AATT 9 cut(s) 43, 71, 109, 116, 332, 500, 713, 1119, 1182
TatI WGTACW 1 cut(s) 152
TfiI GAWTC 5 cut(s) 10, 1052, 1223, 1237, 1325
Tru1I TTAA 1 cut(s) 716
Tru9I TTAA 1 cut(s) 716
TscAI CASTG 3 cut(s) 653, 852, 882
TseFI GTSAC 2 cut(s) 4, 182
TseI GCWGC 3 cut(s) 305, 635, 1259
Tsp45I GTSAC 2 cut(s) 4, 182
TspDTI ATGAA 7 cut(s) 180, 359, 513, 777, 816, 922, 1128
TspGWI ACGGA 3 cut(s) 818, 929, 1202
TspRI CASTG 3 cut(s) 653, 852, 882
Tth111I GACNNNGTC 1 cut(s) 908
VpaK11BI GGWCC 1 cut(s) 431
XapI RAATTY 3 cut(s) 109, 116, 332
XbaI TCTAGA 1 cut(s) 1066
XceI RCATGY 3 cut(s) 159, 695, 812
XspI CTAG 4 cut(s) 419, 639, 1067, 1290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.