Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0007524

Physical Location & Seq

Genomic Coordinates Reverse (-)

4260469 .. 4264120

Gene Structure 3652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1062800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGTTTGACAAAATGATAAACAAACGACCTTTTGATGTTGAGGATTCTTATGAGGTTGCTTGTAAGCTCCCTAGACGATTGGAACATGCTAATGAGCCTGCTCCAATTGTGGATACTTTTCCTTTGAGTAGCAGTCCCCAGAAAATTCAAATTTCAGATGGTGAAGGTGACGGGAGTTTTAGTAAATGTCCAGACGAAGGAAGGTCTGCAAGTGACTTGGGAACTGAATCCTCAAATGAGACCTACAAAGAACTTGAAACTGGTGCTTCTGGAAGCTCCTTCCGATTTTGGTGGGCCAACAACAATATGTTTGAAGCTCATGTAAGACCTGAGGCAGCAGGGCATCTATCATTATTCCCAGAATTTTTTTCACCTGCAAACCATTTGAGGGCTTTTCTTCATTCTGATATGATCTGCTCATCTCCTGTTGATTGTCCTCCTCAAAGGCTAGTTTCTATCGGACCTCAGCATCAAGCTTATGTTCCAGAATGGGGCCACGAGGGTTCACACTCTTCAAATCATCTGGAGAAATTGGATCCTCGGCACGAACTTTCATATGTTTCTGGCCAAGGCCTTGGTGTCAATCAGGAGAAGCTGATGGGTACCTTTATCATTTCTATGCCTGAGCTGGATACATTTGAAAACCATTTATGTGAAGATGTGAGAGCTAGAAACAACTGTAAGTGTGCTGATGCAGGTTCTGTTAGATGCGTGAGACTGCATGTTATGGAAGCAAGAGAGAAATTAAGGGAAGACCTTGGACATCACCTATTTGAAGAGTTGGGCTTTTATGAAATGGGAGAGGAGGTTGCAGAGAAATGGACTAAAGAGGAAGAGCGTGCCTTCCACGATGCCATCTTCTCTAACCCTGCATCATTGGGTAAGAACTTCTGGCACCACCTCTCAGTGGCTTTTCCTTTGCGACCGCACAAAGACCTTGTCAGCTATTATTTCAATGTTTTCATGCTCCATAAGCGTGCTGAGCAGAATAGGTTTGACCCTCTAAACATTGATAGCGACGATGATGAGTGGCAAAAGAGCGAACTTGGAGTGCTCAATGATGACAAGGACGCTTTGGTGGAATCTCCTGTAAATCTAGATGCTCCTGCCTATAACCAGGTAGAACATTTAGGCTGTTTCAATGAGCACATTGAGGATGCTGATGACGTAGATGGTTGTAATGATGGTGCCGATGTGGTTGGTTGTGATGGAATTAAGGACGAGGATGCAGGTGATATAGATGATGGCTCAGGAGCTCATGTTGAGAATCCCCCTGGTGATAGTGGTGGTGCTACTGAAACTCGGCTTTTGGATAAAACTCCTAGCAGTAACAAAGAGAACTATGATATTCAGGATGATTCTTGCACATCATATGAGTATCAGCAAGACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

465

Amino Acids

52.02

Weight (kDa)

4.61

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47220 FvH4_6g47220 FvH4_6g47220
malus_domestica	MD00G1156000.v1.1 MD09G1062800.v1.1 MD17G1056700.v1.1
prunus_persica	Prupe.3G257400_v2.0.a1 Prupe.3G257400_v2.0.a1 Prupe.3G257400_v2.0.a1
pyrus_communis	pycom111g05320 pycom17g05680
rosa_chinensis	RchiOBHm_Chr2g0166271
rosa_laevigata	RLG00000021602
rosa_multiflora	Rmu_sc0016751.1_g000008 Rmu_sc0023080.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085030
rosa_rugosa	Rorug02G0521700 Rorug02G0521800
rosa_samantha	Rh2AG587800 Rh2BG599800 Rh2CG570100 Rh2CG570700 Rh2DG610000
rosa_wichuraiana	Rw0G003910 Rw2G048990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	382, 1220
Acc36I	ACCTGC	3 cut(s)	382, 686, 1220
Acc65I	GGTACC	1 cut(s)	602
AccB1I	GGYRCC	3 cut(s)	602, 894, 1187
AciI	CCGC	1 cut(s)	926
AclWI	GGATC	2 cut(s)	530, 543
AcoI	YGGCCR	1 cut(s)	565
AcsI	RAATTY	3 cut(s)	144, 150, 362
AfaI	GTAC	1 cut(s)	604
AfiI	CCNNNNNNNGG	4 cut(s)	197, 388, 491, 907
AgsI	TTSAA	8 cut(s)	149, 257, 314, 516, 641, 776, 955, 1141
AjnI	CCWGG	2 cut(s)	1116, 1273
AluBI	AGCT	9 cut(s)	67, 276, 317, 476, 595, 628, 668, 945, 1256
AluI	AGCT	9 cut(s)	67, 276, 317, 476, 595, 628, 668, 945, 1256
Alw21I	GWGCWC	3 cut(s)	1056, 1149, 1258
Alw26I	GTCTC	2 cut(s)	233, 709
AlwI	GGATC	2 cut(s)	530, 543
AlwNI	CAGNNNCTG	1 cut(s)	701
AoxI	GGCC	4 cut(s)	294, 493, 565, 571
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	3 cut(s)	144, 150, 362
ArsI	GACNNNNNNTTYG	2 cut(s)	924, 956
Asp718I	GGTACC	1 cut(s)	602
AspS9I	GGNCC	3 cut(s)	294, 461, 493
AsuHPI	GGTGA	6 cut(s)	173, 179, 363, 758, 1244, 1289
AvaII	GGWCC	1 cut(s)	461
AxyI	CCTNAGG	1 cut(s)	330
BalI	TGGCCA	1 cut(s)	567
BamHI	GGATCC	1 cut(s)	535
BanI	GGYRCC	3 cut(s)	602, 894, 1187
BanII	GRGCYC	1 cut(s)	1258
BauI	CACGAG	1 cut(s)	497
BbsI	GAAGAC	1 cut(s)	759
Bbv12I	GWGCWC	3 cut(s)	1056, 1149, 1258
BbvCI	CCTCAGC	1 cut(s)	465
BbvI	GCAGC	1 cut(s)	347
BccI	CCATC	7 cut(s)	152, 592, 863, 1166, 1178, 1202, 1238
BciT130I	CCWGG	2 cut(s)	1118, 1275
BciVI	GTATCC	2 cut(s)	106, 625
BcoDI	GTCTC	2 cut(s)	233, 709
BfaI	CTAG	5 cut(s)	72, 449, 669, 1097, 1323
BfuAI	ACCTGC	3 cut(s)	382, 686, 1220
BfuI	GTATCC	2 cut(s)	106, 625
BisI	GCNGC	1 cut(s)	336
BlpI	GCTNAGC	1 cut(s)	981
BlsI	GCNGC	1 cut(s)	337
Bme1390I	CCNGG	2 cut(s)	1118, 1275
Bme18I	GGWCC	1 cut(s)	461
BmgT120I	GGNCC	3 cut(s)	294, 461, 493
BmiI	GGNNCC	5 cut(s)	494, 537, 604, 896, 1189
BmrFI	CCNGG	2 cut(s)	1118, 1275
BmsI	GCATC	9 cut(s)	352, 478, 682, 698, 841, 881, 1090, 1147, 1216
BpiI	GAAGAC	1 cut(s)	759
BpmI	CTGGAG	1 cut(s)	545
Bpu10I	CCTNAGC	3 cut(s)	465, 624, 1249
Bpu1102I	GCTNAGC	1 cut(s)	981
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	5 cut(s)	539, 568, 574, 757, 1273
BsaXI	ACNNNNNCTCC	6 cut(s)	166, 196, 792, 822, 1245, 1275
Bsc4I	CCNNNNNNNGG	4 cut(s)	197, 388, 491, 907
Bse1I	ACTGG	1 cut(s)	265
Bse21I	CCTNAGG	1 cut(s)	330
BseBI	CCWGG	2 cut(s)	1118, 1275
BseDI	CCNNGG	5 cut(s)	539, 568, 574, 757, 1273
BseGI	GGATG	3 cut(s)	1162, 1231, 1360
BseLI	CCNNNNNNNGG	4 cut(s)	197, 388, 491, 907
BseMII	CTCAG	6 cut(s)	321, 479, 615, 918, 972, 1263
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	2 cut(s)	429, 818
BseXI	GCAGC	1 cut(s)	347
Bsh1285I	CGRYCG	1 cut(s)	926
BshFI	GGCC	4 cut(s)	296, 495, 567, 573
BshNI	GGYRCC	3 cut(s)	602, 894, 1187
BsiEI	CGRYCG	1 cut(s)	926
BsiHKAI	GWGCWC	3 cut(s)	1056, 1149, 1258
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	4 cut(s)	197, 388, 491, 907
BsmAI	GTCTC	2 cut(s)	233, 709
BsmFI	GGGAC	1 cut(s)	120
BsnI	GGCC	4 cut(s)	296, 495, 567, 573
Bso31I	GGTCTC	1 cut(s)	233
Bsp1286I	GDGCHC	3 cut(s)	1056, 1149, 1258
Bsp143I	GATC	2 cut(s)	411, 535
Bsp1720I	GCTNAGC	1 cut(s)	981
BspACI	CCGC	1 cut(s)	926
BspANI	GGCC	4 cut(s)	296, 495, 567, 573
BspCNI	CTCAG	6 cut(s)	322, 478, 616, 917, 973, 1262
BspLI	GGNNCC	5 cut(s)	494, 537, 604, 896, 1189
BspMI	ACCTGC	3 cut(s)	382, 686, 1220
BspPI	GGATC	2 cut(s)	530, 543
BspQI	GCTCTTC	1 cut(s)	828
BspT107I	GGYRCC	3 cut(s)	602, 894, 1187
BspTNI	GGTCTC	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	5 cut(s)	539, 568, 574, 757, 1273
BssMI	GATC	2 cut(s)	411, 535
BssSI	CACGAG	1 cut(s)	497
BssT1I	CCWWGG	3 cut(s)	568, 574, 757
Bst2BI	CACGAG	1 cut(s)	497
Bst2UI	CCWGG	2 cut(s)	1118, 1275
Bst4CI	ACNGT	2 cut(s)	680, 1391
Bst6I	CTCTTC	3 cut(s)	517, 771, 828
BstC8I	GCNNGC	3 cut(s)	99, 840, 978
BstDEI	CTNAG	6 cut(s)	330, 465, 624, 904, 981, 1249
BstF5I	GGATG	3 cut(s)	1162, 1231, 1360
BstKTI	GATC	2 cut(s)	414, 538
BstMAI	GTCTC	2 cut(s)	233, 709
BstMBI	GATC	2 cut(s)	411, 535
BstMCI	CGRYCG	1 cut(s)	926
BstMWI	GCNNNNNNNGC	2 cut(s)	973, 982
BstNI	CCWGG	2 cut(s)	1118, 1275
BstNSI	RCATGY	2 cut(s)	89, 725
BstSCI	CCNGG	2 cut(s)	1116, 1273
BstV1I	GCAGC	1 cut(s)	347
BstV2I	GAAGAC	1 cut(s)	759
BstX2I	RGATCY	1 cut(s)	535
BstXI	CCANNNNNNTGG	1 cut(s)	575
BstYI	RGATCY	1 cut(s)	535
Bsu36I	CCTNAGG	1 cut(s)	330
BsuI	GTATCC	2 cut(s)	106, 625
BsuRI	GGCC	4 cut(s)	296, 495, 567, 573
BtsCI	GGATG	3 cut(s)	1162, 1231, 1360
BtsIMutI	CAGTG	1 cut(s)	912
BveI	ACCTGC	3 cut(s)	382, 686, 1220
Cac8I	GCNNGC	3 cut(s)	99, 840, 978
CaiI	CAGNNNCTG	1 cut(s)	701
Cfr13I	GGNCC	3 cut(s)	294, 461, 493
CseI	GACGC	1 cut(s)	1079
CsiI	ACCWGGT	1 cut(s)	1116
Csp6I	GTAC	1 cut(s)	603
CviAII	CATG	5 cut(s)	86, 320, 722, 964, 1259
CviQI	GTAC	1 cut(s)	603
DdeI	CTNAG	6 cut(s)	330, 465, 624, 904, 981, 1249
DpnI	GATC	2 cut(s)	413, 537
DpnII	GATC	2 cut(s)	411, 535
EaeI	YGGCCR	1 cut(s)	565
Eam1104I	CTCTTC	3 cut(s)	517, 771, 828
EarI	CTCTTC	3 cut(s)	517, 771, 828
Ecl136II	GAGCTC	1 cut(s)	1256
Eco130I	CCWWGG	3 cut(s)	568, 574, 757
Eco147I	AGGCCT	1 cut(s)	573
Eco24I	GRGCYC	1 cut(s)	1258
Eco31I	GGTCTC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	461
Eco53kI	GAGCTC	1 cut(s)	1256
Eco81I	CCTNAGG	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	1256
EcoRII	CCWGG	2 cut(s)	1116, 1273
EcoT14I	CCWWGG	3 cut(s)	568, 574, 757
EcoT38I	GRGCYC	1 cut(s)	1258
ErhI	CCWWGG	3 cut(s)	568, 574, 757
FaeI	CATG	5 cut(s)	89, 323, 725, 967, 1262
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	5 cut(s)	85, 319, 721, 963, 1258
FauNDI	CATATG	2 cut(s)	556, 1372
Fnu4HI	GCNGC	1 cut(s)	336
FokI	GGATG	3 cut(s)	1169, 1238, 1367
FriOI	GRGCYC	1 cut(s)	1258
Fsp4HI	GCNGC	1 cut(s)	336
FspBI	CTAG	5 cut(s)	72, 449, 669, 1097, 1323
GluI	GCNGC	1 cut(s)	336
GsuI	CTGGAG	1 cut(s)	545
HaeIII	GGCC	4 cut(s)	296, 495, 567, 573
HgaI	GACGC	1 cut(s)	1079
Hin1II	CATG	5 cut(s)	89, 323, 725, 967, 1262
HindIII	AAGCTT	1 cut(s)	474
HinfI	GANTC	5 cut(s)	44, 227, 1082, 1267, 1358
HphI	GGTGA	6 cut(s)	173, 179, 363, 758, 1244, 1289
Hpy166II	GTNNAC	1 cut(s)	506
Hpy188I	TCNGA	4 cut(s)	157, 284, 406, 461
Hpy188III	TCNNGA	8 cut(s)	191, 270, 485, 524, 587, 1097, 1251, 1352
Hpy8I	GTNNAC	1 cut(s)	506
Hpy99I	CGWCG	1 cut(s)	1022
HpyAV	CCTTC	5 cut(s)	158, 191, 195, 289, 853
HpyCH4III	ACNGT	2 cut(s)	680, 1391
HpyCH4IV	ACGT	1 cut(s)	1167
HpyCH4V	TGCA	8 cut(s)	209, 377, 695, 721, 812, 872, 1229, 1365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	973, 982
HpyF3I	CTNAG	6 cut(s)	330, 465, 624, 904, 981, 1249
HpySE526I	ACGT	1 cut(s)	1167
Hsp92II	CATG	5 cut(s)	89, 323, 725, 967, 1262
KpnI	GGTACC	1 cut(s)	606
Kzo9I	GATC	2 cut(s)	411, 535
LguI	GCTCTTC	1 cut(s)	828
LmnI	GCTCC	6 cut(s)	72, 106, 281, 972, 1108, 1253
Lsp1109I	GCAGC	1 cut(s)	347
LweI	GCATC	9 cut(s)	352, 478, 682, 698, 841, 881, 1090, 1147, 1216
MabI	ACCWGGT	1 cut(s)	1116
MaeI	CTAG	5 cut(s)	72, 449, 669, 1097, 1323
MaeII	ACGT	1 cut(s)	1167
MaeIII	GTNAC	3 cut(s)	167, 212, 1328
MalI	GATC	2 cut(s)	413, 537
MboI	GATC	2 cut(s)	411, 535
MboII	GAAGA	7 cut(s)	389, 504, 668, 764, 788, 845, 850
MfeI	CAATTG	1 cut(s)	105
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	3 cut(s)	1056, 1149, 1258
MlsI	TGGCCA	1 cut(s)	567
MluCI	AATT	7 cut(s)	105, 144, 150, 362, 530, 743, 1212
MluNI	TGGCCA	1 cut(s)	567
Mox20I	TGGCCA	1 cut(s)	567
MscI	TGGCCA	1 cut(s)	567
MseI	TTAA	2 cut(s)	746, 1215
MslI	CAYNNNNRTG	4 cut(s)	90, 617, 651, 975
Msp20I	TGGCCA	1 cut(s)	567
MspR9I	CCNGG	2 cut(s)	1118, 1275
MunI	CAATTG	1 cut(s)	105
MvaI	CCWGG	2 cut(s)	1118, 1275
MwoI	GCNNNNNNNGC	2 cut(s)	973, 982
NdeI	CATATG	2 cut(s)	556, 1372
NdeII	GATC	2 cut(s)	411, 535
NlaIII	CATG	5 cut(s)	89, 323, 725, 967, 1262
NlaIV	GGNNCC	5 cut(s)	494, 537, 604, 896, 1189
NmeAIII	GCCGAG	2 cut(s)	520, 1282
NmuCI	GTSAC	2 cut(s)	167, 212
NspI	RCATGY	2 cut(s)	89, 725
PaqCI	CACCTGC	2 cut(s)	382, 1220
PceI	AGGCCT	1 cut(s)	573
PciSI	GCTCTTC	1 cut(s)	828
PfeI	GAWTC	5 cut(s)	44, 227, 1082, 1267, 1358
PflFI	GACNNNGTC	1 cut(s)	938
PkrI	GCNGC	1 cut(s)	337
Psp124BI	GAGCTC	1 cut(s)	1258
Psp6I	CCWGG	2 cut(s)	1116, 1273
PspGI	CCWGG	2 cut(s)	1116, 1273
PspN4I	GGNNCC	5 cut(s)	494, 537, 604, 896, 1189
PspPI	GGNCC	3 cut(s)	294, 461, 493
PstNI	CAGNNNCTG	1 cut(s)	701
PsuI	RGATCY	1 cut(s)	535
PsyI	GACNNNGTC	1 cut(s)	938
RsaI	GTAC	1 cut(s)	604
RsaNI	GTAC	1 cut(s)	603
RseI	CAYNNNNRTG	4 cut(s)	90, 617, 651, 975
SacI	GAGCTC	1 cut(s)	1258
SapI	GCTCTTC	1 cut(s)	828
SaqAI	TTAA	2 cut(s)	746, 1215
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	2 cut(s)	411, 535
Sau96I	GGNCC	3 cut(s)	294, 461, 493
ScrFI	CCNGG	2 cut(s)	1118, 1275
SduI	GDGCHC	3 cut(s)	1056, 1149, 1258
SexAI	ACCWGGT	1 cut(s)	1116
SfaNI	GCATC	9 cut(s)	352, 478, 682, 698, 841, 881, 1090, 1147, 1216
SinI	GGWCC	1 cut(s)	461
SmiMI	CAYNNNNRTG	4 cut(s)	90, 617, 651, 975
Sse9I	AATT	7 cut(s)	105, 144, 150, 362, 530, 743, 1212
SseBI	AGGCCT	1 cut(s)	573
SsiI	CCGC	1 cut(s)	926
SspMI	CTAG	5 cut(s)	72, 449, 669, 1097, 1323
SstI	GAGCTC	1 cut(s)	1258
StuI	AGGCCT	1 cut(s)	573
StyD4I	CCNGG	2 cut(s)	1116, 1273
StyI	CCWWGG	3 cut(s)	568, 574, 757
TaaI	ACNGT	2 cut(s)	680, 1391
TaiI	ACGT	1 cut(s)	1170
TasI	AATT	7 cut(s)	105, 144, 150, 362, 530, 743, 1212
TfiI	GAWTC	5 cut(s)	44, 227, 1082, 1267, 1358
Tru1I	TTAA	2 cut(s)	746, 1215
Tru9I	TTAA	2 cut(s)	746, 1215
TscAI	CASTG	1 cut(s)	912
TseFI	GTSAC	2 cut(s)	167, 212
TseI	GCWGC	1 cut(s)	335
Tsp45I	GTSAC	2 cut(s)	167, 212
TspDTI	ATGAA	4 cut(s)	389, 543, 807, 952
TspRI	CASTG	1 cut(s)	912
Tth111I	GACNNNGTC	1 cut(s)	938
VpaK11BI	GGWCC	1 cut(s)	461
XapI	RAATTY	3 cut(s)	144, 150, 362
XbaI	TCTAGA	1 cut(s)	1096
XceI	RCATGY	2 cut(s)	89, 725
XspI	CTAG	5 cut(s)	72, 449, 669, 1097, 1323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.