Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023080.1

Orthogroup ID

OG0007524

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3005

Gene Structure 3005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023080.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

gacaaaatgattaacaaacgatcttttggtgatgagggttcttttgaggttgcttgtaagcaccctagacatttggaacactataatgagcctgctccatatgtggatgtttttcattttagtgatgcttcccagaaatttcaaactccagatggcaaaggtgacgggagttgtaaatttcaagaggaaggaaggtctgcagctgcaagggacatggcaactgaagtcacaaatgagacctacaaagaacttgagactggtgcttccggaagcatggccaaatgtttgtgggtcaacaacagtattgttgaagctaatgtaagatccgagtcagaagctcatctttcattgttcccagaattttttggacctgtaaaccaattgagggatatacatcattctgacaagatctgttcatctcctgttgattattctcctcattacctagtctctgttggacccgagcatcaagcttatgttccagactgcggccatgagggttcacacactccagaacatgaacggcctttgggtgttgatgaggaaaagctaatgggtacctgtgtcctttctatgcctgaccttgaagcatctgcaaacttttgctgtgagggagccagagacaactgtatgtgtgctgattcaggttctgtaagatgtgtcagacagcacatcacagacggtagaaagaaattaagggaagaccttgggcaggagctttttgaagagttgggcttttgtgatatgggagaggaggttgcagataaatggagtgaagaggaagagcatctgttccatgatgttgtcctctctaaccctgcatcactgggtaagaacttctggcataatctctcagtggcctttccttcacgaacgcataaggatgttgtcagctattattttaatgtgtttatgctccggaggcgtgctgagcagaataggtttgatcctctaaacactgatagtgatgatgatgagttgcaaaaaagtgaatttggactggtagaggataatgaggagcctgtggtagtatctcctattaatctagatgcttctgcctataatgaggaagaccacttacggggtgcccaagtatacattgaagatgcggatgacatagatggttatgacgatgctgccgtggttggatgcaaaggtattaatgacaatgaggggggtgatatagatgatggctcaggagcctctcattctgggaatttccctggtgattgtggcagatccactgaatctcggcttttgtttaaaacttctgagactgttagagcagattatgatattcaagatgattcttgcacatcctatgactatcagcaagacagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

447

Amino Acids

49.85

Weight (kDa)

4.51

Isoelectric Point (pI)

53.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47220 FvH4_6g47220 FvH4_6g47220
malus_domestica	MD00G1156000.v1.1 MD09G1062800.v1.1 MD17G1056700.v1.1
prunus_persica	Prupe.3G257400_v2.0.a1 Prupe.3G257400_v2.0.a1 Prupe.3G257400_v2.0.a1
pyrus_communis	pycom111g05320 pycom17g05680
rosa_chinensis	RchiOBHm_Chr2g0166271
rosa_laevigata	RLG00000021602
rosa_multiflora	Rmu_sc0016751.1_g000008 Rmu_sc0023080.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085030
rosa_rugosa	Rorug02G0521700 Rorug02G0521800
rosa_samantha	Rh2AG587800 Rh2BG599800 Rh2CG570100 Rh2CG570700 Rh2DG610000
rosa_wichuraiana	Rw0G003910 Rw2G048990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	557
AccB1I	GGYRCC	2 cut(s)	557, 1085
AccI	GTMKAC	1 cut(s)	1095
AccIII	TCCGGA	2 cut(s)	266, 918
AciI	CCGC	2 cut(s)	489, 1109
AclWI	GGATC	3 cut(s)	318, 941, 1233
AcoI	YGGCCR	2 cut(s)	276, 490
AcsI	RAATTY	5 cut(s)	137, 176, 359, 992, 1216
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	1 cut(s)	559
AfiI	CCNNNNNNNGG	4 cut(s)	385, 488, 712, 1081
AgsI	TTSAA	7 cut(s)	143, 182, 311, 587, 725, 1103, 1301
AjnI	CCWGG	1 cut(s)	1222
AluBI	AGCT	7 cut(s)	203, 314, 338, 473, 550, 718, 894
AluI	AGCT	7 cut(s)	203, 314, 338, 473, 550, 718, 894
Alw26I	GTCTC	5 cut(s)	230, 248, 454, 615, 1268
AlwI	GGATC	3 cut(s)	318, 941, 1233
AlwNI	CAGNNNCTG	1 cut(s)	650
Ama87I	CYCGRG	1 cut(s)	461
Aor13HI	TCCGGA	2 cut(s)	266, 918
AoxI	GGCC	4 cut(s)	276, 490, 524, 858
ApeKI	GCWGC	3 cut(s)	200, 203, 1136
ApoI	RAATTY	5 cut(s)	137, 176, 359, 992, 1216
AseI	ATTAAT	2 cut(s)	1041, 1161
Asp718I	GGTACC	1 cut(s)	557
AspS9I	GGNCC	2 cut(s)	368, 458
AsuHPI	GGTGA	4 cut(s)	41, 173, 1190, 1238
AvaI	CYCGRG	1 cut(s)	461
AvaII	GGWCC	2 cut(s)	368, 458
BaeGI	GKGCMC	1 cut(s)	1090
BaeI	ACNNNNGTAYC	2 cut(s)	549, 582
BalI	TGGCCA	1 cut(s)	278
BanI	GGYRCC	2 cut(s)	557, 1085
BarI	GAAGNNNNNNTAC	2 cut(s)	1062, 1094
BbsI	GAAGAC	2 cut(s)	708, 1077
BbvI	GCAGC	3 cut(s)	190, 212, 1123
BccI	CCATC	3 cut(s)	146, 1115, 1184
BceAI	ACGGC	2 cut(s)	539, 1124
BciT130I	CCWGG	1 cut(s)	1224
BcoDI	GTCTC	5 cut(s)	230, 248, 454, 615, 1268
BfaI	CTAG	3 cut(s)	66, 446, 1046
BfmI	CTRYAG	1 cut(s)	198
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	4 cut(s)	201, 204, 490, 1137
BlpI	GCTNAGC	1 cut(s)	930
BlsI	GCNGC	4 cut(s)	202, 205, 491, 1138
Bme1390I	CCNGG	1 cut(s)	1224
Bme18I	GGWCC	2 cut(s)	368, 458
BmeT110I	CYCGRG	1 cut(s)	461
BmgT120I	GGNCC	2 cut(s)	368, 458
BmiI	GGNNCC	6 cut(s)	460, 559, 616, 1020, 1087, 1201
BmrFI	CCNGG	1 cut(s)	1224
BmrI	ACTGGG	1 cut(s)	836
BmsI	GCATC	9 cut(s)	115, 475, 599, 796, 830, 1039, 1096, 1123, 1139
BmuI	ACTGGG	1 cut(s)	836
BpiI	GAAGAC	2 cut(s)	708, 1077
BpmI	CTGGAG	2 cut(s)	132, 495
Bpu10I	CCTNAGC	1 cut(s)	1195
Bpu1102I	GCTNAGC	1 cut(s)	930
BpuEI	CTTGAG	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	393
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	3 cut(s)	706, 1140, 1222
BsaWI	WCCGGW	2 cut(s)	266, 918
BsaXI	ACNNNNNCTCC	2 cut(s)	741, 771
Bsc4I	CCNNNNNNNGG	4 cut(s)	385, 488, 712, 1081
Bse1I	ACTGG	3 cut(s)	262, 831, 1005
Bse8I	GATNNNNATC	1 cut(s)	393
BseAI	TCCGGA	2 cut(s)	266, 918
BseBI	CCWGG	1 cut(s)	1224
BseDI	CCNNGG	3 cut(s)	706, 1140, 1222
BseGI	GGATG	5 cut(s)	112, 889, 1117, 1154, 1316
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	4 cut(s)	385, 488, 712, 1081
BseMII	CTCAG	4 cut(s)	867, 921, 1209, 1263
BseNI	ACTGG	3 cut(s)	262, 831, 1005
BseRI	GAGGAG	3 cut(s)	426, 767, 1031
BseSI	GKGCMC	1 cut(s)	1090
BseXI	GCAGC	3 cut(s)	190, 212, 1123
BshFI	GGCC	4 cut(s)	278, 492, 526, 860
BshNI	GGYRCC	2 cut(s)	557, 1085
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	2 cut(s)	267, 919
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	4 cut(s)	385, 488, 712, 1081
BsmAI	GTCTC	5 cut(s)	230, 248, 454, 615, 1268
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	4 cut(s)	278, 492, 526, 860
Bso31I	GGTCTC	1 cut(s)	230
BsoBI	CYCGRG	1 cut(s)	461
Bsp1286I	GDGCHC	1 cut(s)	1090
Bsp13I	TCCGGA	2 cut(s)	266, 918
Bsp143I	GATC	5 cut(s)	20, 323, 408, 946, 1238
Bsp1720I	GCTNAGC	1 cut(s)	930
BspACI	CCGC	2 cut(s)	489, 1109
BspANI	GGCC	4 cut(s)	278, 492, 526, 860
BspCNI	CTCAG	4 cut(s)	866, 922, 1208, 1264
BspEI	TCCGGA	2 cut(s)	266, 918
BspLI	GGNNCC	6 cut(s)	460, 559, 616, 1020, 1087, 1201
BspMAI	CTGCAG	1 cut(s)	202
BspPI	GGATC	3 cut(s)	318, 941, 1233
BspQI	GCTCTTC	1 cut(s)	777
BspT107I	GGYRCC	2 cut(s)	557, 1085
BspTNI	GGTCTC	1 cut(s)	230
BsrI	ACTGG	3 cut(s)	262, 831, 1005
BssECI	CCNNGG	3 cut(s)	706, 1140, 1222
BssMI	GATC	5 cut(s)	20, 323, 408, 946, 1238
BssNAI	GTATAC	1 cut(s)	1096
BssT1I	CCWWGG	1 cut(s)	706
Bst1107I	GTATAC	1 cut(s)	1096
Bst2UI	CCWGG	1 cut(s)	1224
Bst4CI	ACNGT	5 cut(s)	302, 629, 683, 1279, 1340
Bst6I	CTCTTC	3 cut(s)	720, 771, 777
BstC8I	GCNNGC	2 cut(s)	93, 927
BstDEI	CTNAG	4 cut(s)	853, 930, 1195, 1272
BstDSI	CCRYGG	1 cut(s)	1140
BstENI	CCTNNNNNAGG	1 cut(s)	710
BstF5I	GGATG	5 cut(s)	112, 889, 1117, 1154, 1316
BstKTI	GATC	5 cut(s)	23, 326, 411, 949, 1241
BstMAI	GTCTC	5 cut(s)	230, 248, 454, 615, 1268
BstMBI	GATC	5 cut(s)	20, 323, 408, 946, 1238
BstMWI	GCNNNNNNNGC	2 cut(s)	922, 931
BstNI	CCWGG	1 cut(s)	1224
BstSCI	CCNGG	1 cut(s)	1222
BstSFI	CTRYAG	1 cut(s)	198
BstSLI	GKGCMC	1 cut(s)	1090
BstV1I	GCAGC	3 cut(s)	190, 212, 1123
BstV2I	GAAGAC	2 cut(s)	708, 1077
BstX2I	RGATCY	3 cut(s)	323, 408, 1238
BstYI	RGATCY	3 cut(s)	323, 408, 1238
BstZ17I	GTATAC	1 cut(s)	1096
BsuRI	GGCC	4 cut(s)	278, 492, 526, 860
BtgI	CCRYGG	1 cut(s)	1140
BtsCI	GGATG	5 cut(s)	112, 889, 1117, 1154, 1316
BtsIMutI	CAGTG	4 cut(s)	824, 861, 957, 1242
Cac8I	GCNNGC	2 cut(s)	93, 927
CaiI	CAGNNNCTG	1 cut(s)	650
Cfr13I	GGNCC	2 cut(s)	368, 458
Csp6I	GTAC	1 cut(s)	558
CviAII	CATG	5 cut(s)	214, 274, 494, 518, 797
CviQI	GTAC	1 cut(s)	558
DdeI	CTNAG	4 cut(s)	853, 930, 1195, 1272
DpnI	GATC	5 cut(s)	22, 325, 410, 948, 1240
DpnII	GATC	5 cut(s)	20, 323, 408, 946, 1238
DraI	TTTAAA	1 cut(s)	1264
EaeI	YGGCCR	2 cut(s)	276, 490
Eam1104I	CTCTTC	3 cut(s)	720, 771, 777
EarI	CTCTTC	3 cut(s)	720, 771, 777
Eco130I	CCWWGG	1 cut(s)	706
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	2 cut(s)	368, 458
Eco57I	CTGAAG	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	461
EcoNI	CCTNNNNNAGG	1 cut(s)	710
EcoRII	CCWGG	1 cut(s)	1222
EcoT14I	CCWWGG	1 cut(s)	706
ErhI	CCWWGG	1 cut(s)	706
FaeI	CATG	5 cut(s)	217, 277, 497, 521, 800
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	5 cut(s)	213, 273, 493, 517, 796
FauNDI	CATATG	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	1095
Fnu4HI	GCNGC	4 cut(s)	201, 204, 490, 1137
FokI	GGATG	5 cut(s)	119, 896, 1124, 1161, 1303
Fsp4HI	GCNGC	4 cut(s)	201, 204, 490, 1137
FspBI	CTAG	3 cut(s)	66, 446, 1046
GluI	GCNGC	4 cut(s)	201, 204, 490, 1137
GsuI	CTGGAG	2 cut(s)	132, 495
HaeIII	GGCC	4 cut(s)	278, 492, 526, 860
HapII	CCGG	2 cut(s)	267, 919
Hin1II	CATG	5 cut(s)	217, 277, 497, 521, 800
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	471
HinfI	GANTC	4 cut(s)	329, 641, 1247, 1307
HpaII	CCGG	2 cut(s)	267, 919
HphI	GGTGA	4 cut(s)	41, 173, 1190, 1238
Hpy166II	GTNNAC	4 cut(s)	295, 376, 503, 1096
Hpy188I	TCNGA	5 cut(s)	328, 334, 403, 665, 1273
Hpy8I	GTNNAC	4 cut(s)	295, 376, 503, 1096
HpyAV	CCTTC	3 cut(s)	182, 186, 876
HpyCH4III	ACNGT	5 cut(s)	302, 629, 683, 1279, 1340
HpyCH4V	TGCA	8 cut(s)	200, 206, 596, 761, 821, 982, 1152, 1314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	922, 931
HpyF3I	CTNAG	4 cut(s)	853, 930, 1195, 1272
Hsp92II	CATG	5 cut(s)	217, 277, 497, 521, 800
Kpn2I	TCCGGA	2 cut(s)	266, 918
KpnI	GGTACC	1 cut(s)	561
Kzo9I	GATC	5 cut(s)	20, 323, 408, 946, 1238
LguI	GCTCTTC	1 cut(s)	777
LmnI	GCTCC	6 cut(s)	100, 614, 715, 921, 1018, 1199
Lsp1109I	GCAGC	3 cut(s)	190, 212, 1123
LweI	GCATC	9 cut(s)	115, 475, 599, 796, 830, 1039, 1096, 1123, 1139
MaeI	CTAG	3 cut(s)	66, 446, 1046
MaeIII	GTNAC	2 cut(s)	161, 226
MalI	GATC	5 cut(s)	22, 325, 410, 948, 1240
MboI	GATC	5 cut(s)	20, 323, 408, 946, 1238
MboII	GAAGA	6 cut(s)	713, 737, 788, 794, 1082, 1115
MfeI	CAATTG	1 cut(s)	380
MflI	RGATCY	3 cut(s)	323, 408, 1238
MhlI	GDGCHC	1 cut(s)	1090
MlsI	TGGCCA	1 cut(s)	278
MluCI	AATT	7 cut(s)	137, 176, 359, 380, 692, 992, 1216
MluNI	TGGCCA	1 cut(s)	278
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	2 cut(s)	436, 1126
Mox20I	TGGCCA	1 cut(s)	278
MroI	TCCGGA	2 cut(s)	266, 918
MscI	TGGCCA	1 cut(s)	278
MseI	TTAA	7 cut(s)	12, 695, 903, 1041, 1161, 1263, 1342
MslI	CAYNNNNRTG	3 cut(s)	84, 120, 882
Msp20I	TGGCCA	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	2 cut(s)	267, 919
MspR9I	CCNGG	1 cut(s)	1224
MunI	CAATTG	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	1224
MwoI	GCNNNNNNNGC	2 cut(s)	922, 931
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	5 cut(s)	20, 323, 408, 946, 1238
NlaIII	CATG	5 cut(s)	217, 277, 497, 521, 800
NlaIV	GGNNCC	6 cut(s)	460, 559, 616, 1020, 1087, 1201
NmeAIII	GCCGAG	1 cut(s)	1231
NmuCI	GTSAC	2 cut(s)	161, 226
PciSI	GCTCTTC	1 cut(s)	777
PcsI	WCGNNNNNNNCGW	1 cut(s)	1137
PfeI	GAWTC	3 cut(s)	641, 1247, 1307
PkrI	GCNGC	4 cut(s)	202, 205, 491, 1138
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
PshBI	ATTAAT	2 cut(s)	1041, 1161
Psp6I	CCWGG	1 cut(s)	1222
PspGI	CCWGG	1 cut(s)	1222
PspN4I	GGNNCC	6 cut(s)	460, 559, 616, 1020, 1087, 1201
PspPI	GGNCC	2 cut(s)	368, 458
PstI	CTGCAG	1 cut(s)	202
PstNI	CAGNNNCTG	1 cut(s)	650
PsuI	RGATCY	3 cut(s)	323, 408, 1238
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	559
RsaNI	GTAC	1 cut(s)	558
RseI	CAYNNNNRTG	3 cut(s)	84, 120, 882
SapI	GCTCTTC	1 cut(s)	777
SaqAI	TTAA	7 cut(s)	12, 695, 903, 1041, 1161, 1263, 1342
SatI	GCNGC	4 cut(s)	201, 204, 490, 1137
Sau3AI	GATC	5 cut(s)	20, 323, 408, 946, 1238
Sau96I	GGNCC	2 cut(s)	368, 458
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	1 cut(s)	1224
SduI	GDGCHC	1 cut(s)	1090
SfaNI	GCATC	9 cut(s)	115, 475, 599, 796, 830, 1039, 1096, 1123, 1139
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	2 cut(s)	368, 458
SmiMI	CAYNNNNRTG	3 cut(s)	84, 120, 882
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	7 cut(s)	137, 176, 359, 380, 692, 992, 1216
SsiI	CCGC	2 cut(s)	489, 1109
SspMI	CTAG	3 cut(s)	66, 446, 1046
StyD4I	CCNGG	1 cut(s)	1222
StyI	CCWWGG	1 cut(s)	706
TaaI	ACNGT	5 cut(s)	302, 629, 683, 1279, 1340
TasI	AATT	7 cut(s)	137, 176, 359, 380, 692, 992, 1216
TauI	GCSGC	1 cut(s)	492
TfiI	GAWTC	3 cut(s)	641, 1247, 1307
Tru1I	TTAA	7 cut(s)	12, 695, 903, 1041, 1161, 1263, 1342
Tru9I	TTAA	7 cut(s)	12, 695, 903, 1041, 1161, 1263, 1342
TscAI	CASTG	4 cut(s)	831, 861, 964, 1249
TseFI	GTSAC	2 cut(s)	161, 226
TseI	GCWGC	3 cut(s)	200, 203, 1136
Tsp45I	GTSAC	2 cut(s)	161, 226
TspDTI	ATGAA	4 cut(s)	104, 336, 405, 534
TspRI	CASTG	4 cut(s)	831, 861, 964, 1249
VpaK11BI	GGWCC	2 cut(s)	368, 458
VspI	ATTAAT	2 cut(s)	1041, 1161
XagI	CCTNNNNNAGG	1 cut(s)	710
XapI	RAATTY	5 cut(s)	137, 176, 359, 992, 1216
XbaI	TCTAGA	1 cut(s)	1045
XmiI	GTMKAC	1 cut(s)	1095
XspI	CTAG	3 cut(s)	66, 446, 1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.