Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007524

Physical Location & Seq

Genomic Coordinates Forward (+)

81005351 .. 81008805

Gene Structure 3455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53415

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGATTAACAAACGATCTTTTGGTGATGAGGGTTCTTTTGAGGTTGCTTGTAAGCACCCTAGACATTTGGAACACTATAATGAGCCTGCTCCATATGTGGATGTTTTTCATTTTAGTGATGCTTCCCAGAAATTTCAAACTCCAGATGGCAAAGGTGACGGGAGTTGTAAATTTCAAGAGGAAGGAAGGTCTGCAGCTGCAAGGGACATGGCAACTGAAGTCACAAATGAGACCTACAAAGAACTTGGGACTGGTGCTTCCGGAAGCATGGCCAAATGTTTGTGGGTCAACAACAGTATTGTTGAAGCTAATGTAAGATCCGAGTCAGAAGCTCATCTTTCATTGTTCCCAGAATTTTTTGGACCTGTAAACCAATTGAGGGATATACATCATTCTGACAAGATCTGTTCATCTCCTGTTGATTATTCTCCTCATTACCTAGTCTCTGTTGGACCCGAGCATCAAGCTTATGTTCCAGACTGCGGCCATGAGGGTTCACACACTTCAGAACATGAACGGCCTTTGGGTGTTGATGAGGAAAAGCTAATGGGTACCTGTGTCCTTTCTATGCCTGACCTTGAAGCATCTGCAAACTTTTGCTGTGAGGGAGCCAGAGACAACTGTATGTGTGCTGATTCAGGTTCTGTAAGATGTGTCAGACAGCACATCACAGACGGTAGAAAGAAATTAAGGGAAGACCTTGGGCAGGAGCTTTTTGAAGAGTTGGGCTTTTGTGATATGGGAGAGGAGGTTGCAGATAAATGGAGTGAAGAGGAAGAGCATCTGTTCCATGATGTTGTCCTCTCTAACCCTGCATCACTGGGTAAGAACTTCTGGCATAATCTCTCAGTGGCCTTTCCTTCACGAACGCATAAGGATGTTGTCAGCTATTATTTTAATGTGTTTATGCTCCGGAGGCGTGCTGAGCAGAATAGGTTTGATCCTCTAAACACTGATAGTGATGATGATGAGTTGCAAAAAAGTGAATTTGGACTGGTAGAGGATAATGAGGAGCCTGTGGTAGTATCTCCTATTAATCTAGATGCTTCTGCCTATAATGAGGAAGACCACTTACGGGGTGCCCAAGTATACATTGAAGATGCGGATGACATAGATGGTTATGACGATGCTGCCGTGGTTGGATGCAAAGGTATTAATGACAATGAGGGGGGTGATATAGATGATGGCTCAGGAGCCTCTCATGCTGGGAATTTCCCTGGTGATTGTGGCAGATCCACTGAATCTCGGCTTTTGTTTAAAACTTCTGAGACTGTTAGAGCAGATTATGATATTCAAGATGATTCTTGCACATCCTATGACTATCAGCAAGACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

445

Amino Acids

49.51

Weight (kDa)

4.51

Isoelectric Point (pI)

53.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47220 FvH4_6g47220 FvH4_6g47220
malus_domestica	MD00G1156000.v1.1 MD09G1062800.v1.1 MD17G1056700.v1.1
prunus_persica	Prupe.3G257400_v2.0.a1 Prupe.3G257400_v2.0.a1 Prupe.3G257400_v2.0.a1
pyrus_communis	pycom111g05320 pycom17g05680
rosa_chinensis	RchiOBHm_Chr2g0166271
rosa_laevigata	RLG00000021602
rosa_multiflora	Rmu_sc0016751.1_g000008 Rmu_sc0023080.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085030
rosa_rugosa	Rorug02G0521700 Rorug02G0521800
rosa_samantha	Rh2AG587800 Rh2BG599800 Rh2CG570100 Rh2CG570700 Rh2DG610000
rosa_wichuraiana	Rw0G003910 Rw2G048990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	551
AccB1I	GGYRCC	2 cut(s)	551, 1079
AccI	GTMKAC	1 cut(s)	1089
AccIII	TCCGGA	2 cut(s)	260, 912
AciI	CCGC	2 cut(s)	483, 1103
AclWI	GGATC	3 cut(s)	312, 935, 1227
AcoI	YGGCCR	2 cut(s)	270, 484
AcsI	RAATTY	5 cut(s)	131, 170, 353, 986, 1210
AcuI	CTGAAG	2 cut(s)	237, 489
AfaI	GTAC	1 cut(s)	553
AfiI	CCNNNNNNNGG	4 cut(s)	379, 482, 706, 1075
AgsI	TTSAA	7 cut(s)	137, 176, 305, 581, 719, 1097, 1295
AjnI	CCWGG	1 cut(s)	1216
AluBI	AGCT	7 cut(s)	197, 308, 332, 467, 544, 712, 888
AluI	AGCT	7 cut(s)	197, 308, 332, 467, 544, 712, 888
Alw26I	GTCTC	4 cut(s)	224, 448, 609, 1262
AlwI	GGATC	3 cut(s)	312, 935, 1227
AlwNI	CAGNNNCTG	1 cut(s)	644
Ama87I	CYCGRG	1 cut(s)	455
Aor13HI	TCCGGA	2 cut(s)	260, 912
AoxI	GGCC	4 cut(s)	270, 484, 518, 852
ApeKI	GCWGC	3 cut(s)	194, 197, 1130
ApoI	RAATTY	5 cut(s)	131, 170, 353, 986, 1210
AseI	ATTAAT	2 cut(s)	1035, 1155
Asp718I	GGTACC	1 cut(s)	551
AspS9I	GGNCC	2 cut(s)	362, 452
AsuHPI	GGTGA	4 cut(s)	35, 167, 1184, 1232
AvaI	CYCGRG	1 cut(s)	455
AvaII	GGWCC	2 cut(s)	362, 452
BaeGI	GKGCMC	1 cut(s)	1084
BaeI	ACNNNNGTAYC	2 cut(s)	543, 576
BalI	TGGCCA	1 cut(s)	272
BanI	GGYRCC	2 cut(s)	551, 1079
BarI	GAAGNNNNNNTAC	2 cut(s)	1056, 1088
BbsI	GAAGAC	2 cut(s)	702, 1071
BbvI	GCAGC	3 cut(s)	184, 206, 1117
BccI	CCATC	3 cut(s)	140, 1109, 1178
BceAI	ACGGC	2 cut(s)	533, 1118
BciT130I	CCWGG	1 cut(s)	1218
BcoDI	GTCTC	4 cut(s)	224, 448, 609, 1262
BfaI	CTAG	3 cut(s)	60, 440, 1040
BfmI	CTRYAG	1 cut(s)	192
BglII	AGATCT	1 cut(s)	402
BisI	GCNGC	4 cut(s)	195, 198, 484, 1131
BlpI	GCTNAGC	1 cut(s)	924
BlsI	GCNGC	4 cut(s)	196, 199, 485, 1132
Bme1390I	CCNGG	1 cut(s)	1218
Bme18I	GGWCC	2 cut(s)	362, 452
BmeT110I	CYCGRG	1 cut(s)	455
BmgT120I	GGNCC	2 cut(s)	362, 452
BmiI	GGNNCC	6 cut(s)	454, 553, 610, 1014, 1081, 1195
BmrFI	CCNGG	1 cut(s)	1218
BmrI	ACTGGG	1 cut(s)	830
BmsI	GCATC	9 cut(s)	109, 469, 593, 790, 824, 1033, 1090, 1117, 1133
BmuI	ACTGGG	1 cut(s)	830
BpiI	GAAGAC	2 cut(s)	702, 1071
BpmI	CTGGAG	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	1189
Bpu1102I	GCTNAGC	1 cut(s)	924
BsaBI	GATNNNNATC	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	3 cut(s)	700, 1134, 1216
BsaWI	WCCGGW	2 cut(s)	260, 912
BsaXI	ACNNNNNCTCC	2 cut(s)	735, 765
Bsc4I	CCNNNNNNNGG	4 cut(s)	379, 482, 706, 1075
Bse1I	ACTGG	3 cut(s)	256, 825, 999
Bse8I	GATNNNNATC	1 cut(s)	387
BseAI	TCCGGA	2 cut(s)	260, 912
BseBI	CCWGG	1 cut(s)	1218
BseDI	CCNNGG	3 cut(s)	700, 1134, 1216
BseGI	GGATG	5 cut(s)	106, 883, 1111, 1148, 1310
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	4 cut(s)	379, 482, 706, 1075
BseMII	CTCAG	4 cut(s)	861, 915, 1203, 1257
BseNI	ACTGG	3 cut(s)	256, 825, 999
BseRI	GAGGAG	3 cut(s)	420, 761, 1025
BseSI	GKGCMC	1 cut(s)	1084
BseXI	GCAGC	3 cut(s)	184, 206, 1117
BseYI	CCCAGC	1 cut(s)	1205
BshFI	GGCC	4 cut(s)	272, 486, 520, 854
BshNI	GGYRCC	2 cut(s)	551, 1079
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	2 cut(s)	261, 913
BslFI	GGGAC	2 cut(s)	218, 262
BslI	CCNNNNNNNGG	4 cut(s)	379, 482, 706, 1075
BsmAI	GTCTC	4 cut(s)	224, 448, 609, 1262
BsmFI	GGGAC	2 cut(s)	218, 262
BsnI	GGCC	4 cut(s)	272, 486, 520, 854
Bso31I	GGTCTC	1 cut(s)	224
BsoBI	CYCGRG	1 cut(s)	455
Bsp1286I	GDGCHC	1 cut(s)	1084
Bsp13I	TCCGGA	2 cut(s)	260, 912
Bsp143I	GATC	5 cut(s)	14, 317, 402, 940, 1232
Bsp1720I	GCTNAGC	1 cut(s)	924
BspACI	CCGC	2 cut(s)	483, 1103
BspANI	GGCC	4 cut(s)	272, 486, 520, 854
BspCNI	CTCAG	4 cut(s)	860, 916, 1202, 1258
BspEI	TCCGGA	2 cut(s)	260, 912
BspLI	GGNNCC	6 cut(s)	454, 553, 610, 1014, 1081, 1195
BspMAI	CTGCAG	1 cut(s)	196
BspPI	GGATC	3 cut(s)	312, 935, 1227
BspQI	GCTCTTC	1 cut(s)	771
BspT107I	GGYRCC	2 cut(s)	551, 1079
BspTNI	GGTCTC	1 cut(s)	224
BsrI	ACTGG	3 cut(s)	256, 825, 999
BssECI	CCNNGG	3 cut(s)	700, 1134, 1216
BssMI	GATC	5 cut(s)	14, 317, 402, 940, 1232
BssNAI	GTATAC	1 cut(s)	1090
BssT1I	CCWWGG	1 cut(s)	700
Bst1107I	GTATAC	1 cut(s)	1090
Bst2UI	CCWGG	1 cut(s)	1218
Bst4CI	ACNGT	5 cut(s)	296, 623, 677, 1273, 1334
Bst6I	CTCTTC	3 cut(s)	714, 765, 771
BstC8I	GCNNGC	2 cut(s)	87, 921
BstDEI	CTNAG	4 cut(s)	847, 924, 1189, 1266
BstDSI	CCRYGG	1 cut(s)	1134
BstENI	CCTNNNNNAGG	1 cut(s)	704
BstF5I	GGATG	5 cut(s)	106, 883, 1111, 1148, 1310
BstKTI	GATC	5 cut(s)	17, 320, 405, 943, 1235
BstMAI	GTCTC	4 cut(s)	224, 448, 609, 1262
BstMBI	GATC	5 cut(s)	14, 317, 402, 940, 1232
BstMWI	GCNNNNNNNGC	3 cut(s)	916, 925, 1202
BstNI	CCWGG	1 cut(s)	1218
BstSCI	CCNGG	1 cut(s)	1216
BstSFI	CTRYAG	1 cut(s)	192
BstSLI	GKGCMC	1 cut(s)	1084
BstV1I	GCAGC	3 cut(s)	184, 206, 1117
BstV2I	GAAGAC	2 cut(s)	702, 1071
BstX2I	RGATCY	3 cut(s)	317, 402, 1232
BstYI	RGATCY	3 cut(s)	317, 402, 1232
BstZ17I	GTATAC	1 cut(s)	1090
BsuRI	GGCC	4 cut(s)	272, 486, 520, 854
BtgI	CCRYGG	1 cut(s)	1134
BtsCI	GGATG	5 cut(s)	106, 883, 1111, 1148, 1310
BtsIMutI	CAGTG	4 cut(s)	818, 855, 951, 1236
Cac8I	GCNNGC	2 cut(s)	87, 921
CaiI	CAGNNNCTG	1 cut(s)	644
Cfr13I	GGNCC	2 cut(s)	362, 452
Csp6I	GTAC	1 cut(s)	552
CviAII	CATG	6 cut(s)	208, 268, 488, 512, 791, 1202
CviQI	GTAC	1 cut(s)	552
DdeI	CTNAG	4 cut(s)	847, 924, 1189, 1266
DpnI	GATC	5 cut(s)	16, 319, 404, 942, 1234
DpnII	GATC	5 cut(s)	14, 317, 402, 940, 1232
DraI	TTTAAA	1 cut(s)	1258
EaeI	YGGCCR	2 cut(s)	270, 484
Eam1104I	CTCTTC	3 cut(s)	714, 765, 771
EarI	CTCTTC	3 cut(s)	714, 765, 771
Eco130I	CCWWGG	1 cut(s)	700
Eco31I	GGTCTC	1 cut(s)	224
Eco47I	GGWCC	2 cut(s)	362, 452
Eco57I	CTGAAG	2 cut(s)	237, 489
Eco88I	CYCGRG	1 cut(s)	455
EcoNI	CCTNNNNNAGG	1 cut(s)	704
EcoRII	CCWGG	1 cut(s)	1216
EcoT14I	CCWWGG	1 cut(s)	700
ErhI	CCWWGG	1 cut(s)	700
FaeI	CATG	6 cut(s)	211, 271, 491, 515, 794, 1205
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FaqI	GGGAC	2 cut(s)	218, 262
FatI	CATG	6 cut(s)	207, 267, 487, 511, 790, 1201
FauNDI	CATATG	1 cut(s)	94
FblI	GTMKAC	1 cut(s)	1089
Fnu4HI	GCNGC	4 cut(s)	195, 198, 484, 1131
FokI	GGATG	5 cut(s)	113, 890, 1118, 1155, 1297
Fsp4HI	GCNGC	4 cut(s)	195, 198, 484, 1131
FspBI	CTAG	3 cut(s)	60, 440, 1040
GluI	GCNGC	4 cut(s)	195, 198, 484, 1131
GsaI	CCCAGC	1 cut(s)	1209
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	4 cut(s)	272, 486, 520, 854
HapII	CCGG	2 cut(s)	261, 913
Hin1II	CATG	6 cut(s)	211, 271, 491, 515, 794, 1205
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HindIII	AAGCTT	1 cut(s)	465
HinfI	GANTC	4 cut(s)	323, 635, 1241, 1301
HpaII	CCGG	2 cut(s)	261, 913
HphI	GGTGA	4 cut(s)	35, 167, 1184, 1232
Hpy166II	GTNNAC	4 cut(s)	289, 370, 497, 1090
Hpy188I	TCNGA	6 cut(s)	322, 328, 397, 508, 659, 1267
Hpy188III	TCNNGA	9 cut(s)	143, 176, 261, 476, 864, 913, 1040, 1191, 1295
Hpy8I	GTNNAC	4 cut(s)	289, 370, 497, 1090
HpyAV	CCTTC	3 cut(s)	176, 180, 870
HpyCH4III	ACNGT	5 cut(s)	296, 623, 677, 1273, 1334
HpyCH4V	TGCA	8 cut(s)	194, 200, 590, 755, 815, 976, 1146, 1308
HpyF10VI	GCNNNNNNNGC	3 cut(s)	916, 925, 1202
HpyF3I	CTNAG	4 cut(s)	847, 924, 1189, 1266
Hsp92II	CATG	6 cut(s)	211, 271, 491, 515, 794, 1205
Kpn2I	TCCGGA	2 cut(s)	260, 912
KpnI	GGTACC	1 cut(s)	555
Kzo9I	GATC	5 cut(s)	14, 317, 402, 940, 1232
LguI	GCTCTTC	1 cut(s)	771
LmnI	GCTCC	6 cut(s)	94, 608, 709, 915, 1012, 1193
Lsp1109I	GCAGC	3 cut(s)	184, 206, 1117
LweI	GCATC	9 cut(s)	109, 469, 593, 790, 824, 1033, 1090, 1117, 1133
MaeI	CTAG	3 cut(s)	60, 440, 1040
MaeIII	GTNAC	2 cut(s)	155, 220
MalI	GATC	5 cut(s)	16, 319, 404, 942, 1234
MboI	GATC	5 cut(s)	14, 317, 402, 940, 1232
MboII	GAAGA	6 cut(s)	707, 731, 782, 788, 1076, 1109
MfeI	CAATTG	1 cut(s)	374
MflI	RGATCY	3 cut(s)	317, 402, 1232
MhlI	GDGCHC	1 cut(s)	1084
MlsI	TGGCCA	1 cut(s)	272
MluCI	AATT	7 cut(s)	131, 170, 353, 374, 686, 986, 1210
MluNI	TGGCCA	1 cut(s)	272
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	2 cut(s)	430, 1120
Mox20I	TGGCCA	1 cut(s)	272
MroI	TCCGGA	2 cut(s)	260, 912
MscI	TGGCCA	1 cut(s)	272
MseI	TTAA	7 cut(s)	6, 689, 897, 1035, 1155, 1257, 1336
MslI	CAYNNNNRTG	3 cut(s)	78, 114, 876
Msp20I	TGGCCA	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	2 cut(s)	261, 913
MspR9I	CCNGG	1 cut(s)	1218
MunI	CAATTG	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	1218
MwoI	GCNNNNNNNGC	3 cut(s)	916, 925, 1202
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	5 cut(s)	14, 317, 402, 940, 1232
NlaIII	CATG	6 cut(s)	211, 271, 491, 515, 794, 1205
NlaIV	GGNNCC	6 cut(s)	454, 553, 610, 1014, 1081, 1195
NmeAIII	GCCGAG	1 cut(s)	1225
NmuCI	GTSAC	2 cut(s)	155, 220
PciSI	GCTCTTC	1 cut(s)	771
PcsI	WCGNNNNNNNCGW	1 cut(s)	1131
PfeI	GAWTC	3 cut(s)	635, 1241, 1301
PkrI	GCNGC	4 cut(s)	196, 199, 485, 1132
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
PshBI	ATTAAT	2 cut(s)	1035, 1155
Psp6I	CCWGG	1 cut(s)	1216
PspFI	CCCAGC	1 cut(s)	1205
PspGI	CCWGG	1 cut(s)	1216
PspN4I	GGNNCC	6 cut(s)	454, 553, 610, 1014, 1081, 1195
PspPI	GGNCC	2 cut(s)	362, 452
PstI	CTGCAG	1 cut(s)	196
PstNI	CAGNNNCTG	1 cut(s)	644
PsuI	RGATCY	3 cut(s)	317, 402, 1232
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	1 cut(s)	553
RsaNI	GTAC	1 cut(s)	552
RseI	CAYNNNNRTG	3 cut(s)	78, 114, 876
SapI	GCTCTTC	1 cut(s)	771
SaqAI	TTAA	7 cut(s)	6, 689, 897, 1035, 1155, 1257, 1336
SatI	GCNGC	4 cut(s)	195, 198, 484, 1131
Sau3AI	GATC	5 cut(s)	14, 317, 402, 940, 1232
Sau96I	GGNCC	2 cut(s)	362, 452
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	1218
SduI	GDGCHC	1 cut(s)	1084
SfaNI	GCATC	9 cut(s)	109, 469, 593, 790, 824, 1033, 1090, 1117, 1133
SfcI	CTRYAG	1 cut(s)	192
SinI	GGWCC	2 cut(s)	362, 452
SmiMI	CAYNNNNRTG	3 cut(s)	78, 114, 876
Sse9I	AATT	7 cut(s)	131, 170, 353, 374, 686, 986, 1210
SsiI	CCGC	2 cut(s)	483, 1103
SspMI	CTAG	3 cut(s)	60, 440, 1040
StyD4I	CCNGG	1 cut(s)	1216
StyI	CCWWGG	1 cut(s)	700
TaaI	ACNGT	5 cut(s)	296, 623, 677, 1273, 1334
TasI	AATT	7 cut(s)	131, 170, 353, 374, 686, 986, 1210
TauI	GCSGC	1 cut(s)	486
TfiI	GAWTC	3 cut(s)	635, 1241, 1301
Tru1I	TTAA	7 cut(s)	6, 689, 897, 1035, 1155, 1257, 1336
Tru9I	TTAA	7 cut(s)	6, 689, 897, 1035, 1155, 1257, 1336
TscAI	CASTG	4 cut(s)	825, 855, 958, 1243
TseFI	GTSAC	2 cut(s)	155, 220
TseI	GCWGC	3 cut(s)	194, 197, 1130
Tsp45I	GTSAC	2 cut(s)	155, 220
TspDTI	ATGAA	4 cut(s)	98, 330, 399, 528
TspRI	CASTG	4 cut(s)	825, 855, 958, 1243
VpaK11BI	GGWCC	2 cut(s)	362, 452
VspI	ATTAAT	2 cut(s)	1035, 1155
XagI	CCTNNNNNAGG	1 cut(s)	704
XapI	RAATTY	5 cut(s)	131, 170, 353, 986, 1210
XbaI	TCTAGA	1 cut(s)	1039
XmiI	GTMKAC	1 cut(s)	1089
XspI	CTAG	3 cut(s)	60, 440, 1040

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.