Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007524

Physical Location & Seq

Genomic Coordinates Forward (+)

76687350 .. 76688998

Gene Structure 1649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021602

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGTGGCTTCACTTGCAGGACAAAATGATTAACAAACGATCTTTTGGTGATGAGGGTTCTTTTGAGGTTGCTTGTAAGCACCCTAGACATTTGGAACACTATAATGAGCCTGCTCCATATGTGGATGTTTTTCATTTTAGTGATGCTTCCCAGAAATTTCAAACTCCAGGTGACGGGAGTTGTAAATTTCAAGAGGAAGGAAGGTCTGCAGCTGCAAGGGACATGGCAACTGAAGTCACAAATGAGACCTACAAAGAACTTGAGACTGGTGCTTCTGGAAGCATGGCCAAATGTTTGTGGGTCAACAACAGTATTGTTGAAGCTAATGTAAGATCCGAGTCAGAAGCTCATCTTTCATTGTTCCCAGAATTTTTTGGACCTGTAAACCAATTGAGGGATATACATCATTCTGACAAGATCAGTTCATCACCTGTTGATTATTCTCCTCATTACCTAGTCTCTGTTGGACCCGAGCATCAAGCTTATGTTCCAGACTGGGGTCATGAGGGTTCACACACTTCAGATAATCCAGCTAACTTGAATTTTCAACATGAACGTCCTTTGGGTGTTGATGAGGAAAAGCTAATGGGTACCTGTGTCCTTTCTATGCCTGACCTTGAAGCATCTGCAAACTTTTGCTGTGAGGGAGCCAGAGACAACTGTATGTGTGCTGATTCAGGTTCTGTAAGATGTGTCAGACAGCACATCACAGACGGTAGAGAGAAATTAAGGGAAGACCTTGGGCAGGAGCTTTTTGAAGAGTTGGGCTTTTGTGATATGGGAGAGGAGGTTGCAGATAAATGGAGTGAAGAGGAAGAGCATCTGTTCCATGATGTTGTCCTCTCTAACCCTGCATCACTGGGTAAGAACTTCTGGCATAATCTCTCAGTGGCCTTTCCTTCACGAACGCATAAGGATGTTGTCAGCTATTATTTTAATGTGTTTATGCTCCGGAGACGTGCTGAGCAGAATAGGTTTGATCCTCTAAACACTGATAGTGATGATGATGAGTTGCAAAAAAGTGAATTTGGACTGGTAGAGGATAATGAGGAGCCTGTGGTAGTATCTCCTATTAATCTAGATGCTTCTGCCTATAATGAGGAAGACCACTTACGGGGTGCCCAAGAATACATTGAAGATGCGGATGACATAGATGGTTATGATGATGCTGCTGTGGTCGGATGCAAAGGTATTAATGACAATGAGGGGGGTGATATAGATGATGGCTCAGGAGCATCTTATTCTGGGAATTCCCCTGGTGATTGTGGCAGATCCACTGACTCTCGGCTTTTGTTTAAAACTTCTGAGACTAATAGAGCGGATTATGATATTCAAGATGATTCTTGCACATCCTATGACTATCAGCAAGACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

459

Amino Acids

51.3

Weight (kDa)

4.45

Isoelectric Point (pI)

55.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47220 FvH4_6g47220 FvH4_6g47220
malus_domestica	MD00G1156000.v1.1 MD09G1062800.v1.1 MD17G1056700.v1.1
prunus_persica	Prupe.3G257400_v2.0.a1 Prupe.3G257400_v2.0.a1 Prupe.3G257400_v2.0.a1
pyrus_communis	pycom111g05320 pycom17g05680
rosa_chinensis	RchiOBHm_Chr2g0166271
rosa_laevigata	RLG00000021602
rosa_multiflora	Rmu_sc0016751.1_g000008 Rmu_sc0023080.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085030
rosa_rugosa	Rorug02G0521700 Rorug02G0521800
rosa_samantha	Rh2AG587800 Rh2BG599800 Rh2CG570100 Rh2CG570700 Rh2DG610000
rosa_wichuraiana	Rw0G003910 Rw2G048990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	590
AccB1I	GGYRCC	2 cut(s)	590, 1118
AccBSI	CCGCTC	1 cut(s)	1319
AccIII	TCCGGA	1 cut(s)	951
AciI	CCGC	2 cut(s)	1142, 1319
AclWI	GGATC	3 cut(s)	327, 974, 1266
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	6 cut(s)	155, 185, 368, 541, 1025, 1249
AcuI	CTGAAG	2 cut(s)	252, 504
AfaI	GTAC	1 cut(s)	592
AfiI	CCNNNNNNNGG	5 cut(s)	173, 394, 497, 745, 1114
AgsI	TTSAA	9 cut(s)	161, 191, 320, 541, 548, 620, 758, 1136, 1334
AjiI	CACGTC	1 cut(s)	959
AjnI	CCWGG	2 cut(s)	166, 1255
AluBI	AGCT	8 cut(s)	212, 323, 347, 482, 533, 583, 751, 927
AluI	AGCT	8 cut(s)	212, 323, 347, 482, 533, 583, 751, 927
Alw26I	GTCTC	6 cut(s)	239, 257, 463, 648, 949, 1301
AlwI	GGATC	3 cut(s)	327, 974, 1266
AlwNI	CAGNNNCTG	1 cut(s)	683
Ama87I	CYCGRG	1 cut(s)	470
Aor13HI	TCCGGA	1 cut(s)	951
AoxI	GGCC	2 cut(s)	285, 891
ApeKI	GCWGC	3 cut(s)	209, 212, 1169
ApoI	RAATTY	6 cut(s)	155, 185, 368, 541, 1025, 1249
AseI	ATTAAT	2 cut(s)	1074, 1194
Asp718I	GGTACC	1 cut(s)	590
AspS9I	GGNCC	2 cut(s)	377, 467
AsuHPI	GGTGA	5 cut(s)	59, 182, 420, 1223, 1271
AvaI	CYCGRG	1 cut(s)	470
AvaII	GGWCC	2 cut(s)	377, 467
BaeGI	GKGCMC	1 cut(s)	1123
BaeI	ACNNNNGTAYC	2 cut(s)	582, 615
BalI	TGGCCA	1 cut(s)	287
BanI	GGYRCC	2 cut(s)	590, 1118
BarI	GAAGNNNNNNTAC	2 cut(s)	1095, 1127
BbsI	GAAGAC	2 cut(s)	741, 1110
BbvI	GCAGC	3 cut(s)	199, 221, 1156
BccI	CCATC	2 cut(s)	1148, 1217
BciT130I	CCWGG	2 cut(s)	168, 1257
BcoDI	GTCTC	6 cut(s)	239, 257, 463, 648, 949, 1301
BfaI	CTAG	3 cut(s)	84, 455, 1079
BfmI	CTRYAG	1 cut(s)	207
BisI	GCNGC	3 cut(s)	210, 213, 1170
BlpI	GCTNAGC	1 cut(s)	963
BlsI	GCNGC	3 cut(s)	211, 214, 1171
Bme1390I	CCNGG	2 cut(s)	168, 1257
Bme18I	GGWCC	2 cut(s)	377, 467
BmeT110I	CYCGRG	1 cut(s)	470
BmgBI	CACGTC	1 cut(s)	959
BmgT120I	GGNCC	2 cut(s)	377, 467
BmiI	GGNNCC	5 cut(s)	469, 592, 649, 1053, 1120
BmrFI	CCNGG	2 cut(s)	168, 1257
BmrI	ACTGGG	2 cut(s)	505, 869
BmuI	ACTGGG	2 cut(s)	505, 869
BoxI	GACNNNNGTC	1 cut(s)	498
BpiI	GAAGAC	2 cut(s)	741, 1110
BpmI	CTGGAG	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	1228
Bpu1102I	GCTNAGC	1 cut(s)	963
BpuEI	CTTGAG	1 cut(s)	281
BsaBI	GATNNNNATC	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	739, 1255
BsaWI	WCCGGW	1 cut(s)	951
BsaXI	ACNNNNNCTCC	2 cut(s)	774, 804
Bsc4I	CCNNNNNNNGG	5 cut(s)	173, 394, 497, 745, 1114
Bse1I	ACTGG	4 cut(s)	271, 500, 864, 1038
Bse8I	GATNNNNATC	1 cut(s)	402
BseAI	TCCGGA	1 cut(s)	951
BseBI	CCWGG	2 cut(s)	168, 1257
BseDI	CCNNGG	2 cut(s)	739, 1255
BseGI	GGATG	5 cut(s)	130, 922, 1150, 1187, 1349
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	5 cut(s)	173, 394, 497, 745, 1114
BseMII	CTCAG	4 cut(s)	900, 954, 1242, 1296
BseNI	ACTGG	4 cut(s)	271, 500, 864, 1038
BseRI	GAGGAG	3 cut(s)	435, 800, 1064
BseSI	GKGCMC	1 cut(s)	1123
BseXI	GCAGC	3 cut(s)	199, 221, 1156
BshFI	GGCC	2 cut(s)	287, 893
BshNI	GGYRCC	2 cut(s)	590, 1118
BsiHKCI	CYCGRG	1 cut(s)	470
BsiSI	CCGG	1 cut(s)	952
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	5 cut(s)	173, 394, 497, 745, 1114
BsmAI	GTCTC	6 cut(s)	239, 257, 463, 648, 949, 1301
BsmBI	CGTCTC	1 cut(s)	949
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	2 cut(s)	287, 893
Bso31I	GGTCTC	1 cut(s)	239
BsoBI	CYCGRG	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	1123
Bsp13I	TCCGGA	1 cut(s)	951
Bsp143I	GATC	5 cut(s)	38, 332, 417, 979, 1271
Bsp1720I	GCTNAGC	1 cut(s)	963
BspACI	CCGC	2 cut(s)	1142, 1319
BspANI	GGCC	2 cut(s)	287, 893
BspCNI	CTCAG	4 cut(s)	899, 955, 1241, 1297
BspEI	TCCGGA	1 cut(s)	951
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	5 cut(s)	469, 592, 649, 1053, 1120
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	3 cut(s)	327, 974, 1266
BspQI	GCTCTTC	1 cut(s)	810
BspT107I	GGYRCC	2 cut(s)	590, 1118
BspTNI	GGTCTC	1 cut(s)	239
BsrBI	CCGCTC	1 cut(s)	1319
BsrI	ACTGG	4 cut(s)	271, 500, 864, 1038
BssECI	CCNNGG	2 cut(s)	739, 1255
BssMI	GATC	5 cut(s)	38, 332, 417, 979, 1271
BssT1I	CCWWGG	1 cut(s)	739
Bst2UI	CCWGG	2 cut(s)	168, 1257
Bst4CI	ACNGT	4 cut(s)	311, 662, 716, 1373
Bst6I	CTCTTC	3 cut(s)	753, 804, 810
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	4 cut(s)	886, 963, 1228, 1305
BstENI	CCTNNNNNAGG	1 cut(s)	743
BstF5I	GGATG	5 cut(s)	130, 922, 1150, 1187, 1349
BstKTI	GATC	5 cut(s)	41, 335, 420, 982, 1274
BstMAI	GTCTC	6 cut(s)	239, 257, 463, 648, 949, 1301
BstMBI	GATC	5 cut(s)	38, 332, 417, 979, 1271
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstNI	CCWGG	2 cut(s)	168, 1257
BstPAI	GACNNNNGTC	1 cut(s)	498
BstSCI	CCNGG	2 cut(s)	166, 1255
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	1123
BstV1I	GCAGC	3 cut(s)	199, 221, 1156
BstV2I	GAAGAC	2 cut(s)	741, 1110
BstX2I	RGATCY	2 cut(s)	332, 1271
BstYI	RGATCY	2 cut(s)	332, 1271
BsuRI	GGCC	2 cut(s)	287, 893
BtrI	CACGTC	1 cut(s)	959
BtsCI	GGATG	5 cut(s)	130, 922, 1150, 1187, 1349
BtsIMutI	CAGTG	4 cut(s)	857, 894, 990, 1275
Cac8I	GCNNGC	1 cut(s)	111
CaiI	CAGNNNCTG	1 cut(s)	683
CciI	TCATGA	1 cut(s)	502
Cfr13I	GGNCC	2 cut(s)	377, 467
Csp6I	GTAC	1 cut(s)	591
CviAII	CATG	5 cut(s)	223, 283, 503, 551, 830
CviQI	GTAC	1 cut(s)	591
DdeI	CTNAG	4 cut(s)	886, 963, 1228, 1305
DpnI	GATC	5 cut(s)	40, 334, 419, 981, 1273
DpnII	GATC	5 cut(s)	38, 332, 417, 979, 1271
DraI	TTTAAA	1 cut(s)	1297
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	3 cut(s)	753, 804, 810
EarI	CTCTTC	3 cut(s)	753, 804, 810
Eco130I	CCWWGG	1 cut(s)	739
Eco31I	GGTCTC	1 cut(s)	239
Eco47I	GGWCC	2 cut(s)	377, 467
Eco57I	CTGAAG	2 cut(s)	252, 504
Eco88I	CYCGRG	1 cut(s)	470
EcoNI	CCTNNNNNAGG	1 cut(s)	743
EcoRI	GAATTC	1 cut(s)	1249
EcoRII	CCWGG	2 cut(s)	166, 1255
EcoT14I	CCWWGG	1 cut(s)	739
ErhI	CCWWGG	1 cut(s)	739
Esp3I	CGTCTC	1 cut(s)	949
FaeI	CATG	5 cut(s)	226, 286, 506, 554, 833
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	5 cut(s)	222, 282, 502, 550, 829
FauNDI	CATATG	1 cut(s)	118
Fnu4HI	GCNGC	3 cut(s)	210, 213, 1170
FokI	GGATG	5 cut(s)	137, 929, 1157, 1194, 1336
Fsp4HI	GCNGC	3 cut(s)	210, 213, 1170
FspBI	CTAG	3 cut(s)	84, 455, 1079
GluI	GCNGC	3 cut(s)	210, 213, 1170
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	2 cut(s)	287, 893
HapII	CCGG	1 cut(s)	952
Hin1II	CATG	5 cut(s)	226, 286, 506, 554, 833
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	480
HinfI	GANTC	4 cut(s)	338, 674, 1280, 1340
HpaII	CCGG	1 cut(s)	952
HphI	GGTGA	5 cut(s)	59, 182, 420, 1223, 1271
Hpy166II	GTNNAC	3 cut(s)	304, 385, 512
Hpy188I	TCNGA	7 cut(s)	337, 343, 412, 523, 698, 1181, 1306
Hpy188III	TCNNGA	9 cut(s)	191, 276, 491, 503, 903, 952, 1079, 1230, 1334
Hpy8I	GTNNAC	3 cut(s)	304, 385, 512
HpyAV	CCTTC	3 cut(s)	191, 195, 909
HpyCH4III	ACNGT	4 cut(s)	311, 662, 716, 1373
HpyCH4IV	ACGT	2 cut(s)	556, 958
HpyCH4V	TGCA	9 cut(s)	16, 209, 215, 629, 794, 854, 1015, 1185, 1347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
HpyF3I	CTNAG	4 cut(s)	886, 963, 1228, 1305
HpySE526I	ACGT	2 cut(s)	556, 958
Hsp92II	CATG	5 cut(s)	226, 286, 506, 554, 833
Kpn2I	TCCGGA	1 cut(s)	951
KpnI	GGTACC	1 cut(s)	594
Kzo9I	GATC	5 cut(s)	38, 332, 417, 979, 1271
LguI	GCTCTTC	1 cut(s)	810
LmnI	GCTCC	6 cut(s)	118, 647, 748, 954, 1051, 1232
Lsp1109I	GCAGC	3 cut(s)	199, 221, 1156
MaeI	CTAG	3 cut(s)	84, 455, 1079
MaeII	ACGT	2 cut(s)	556, 958
MaeIII	GTNAC	2 cut(s)	170, 235
MalI	GATC	5 cut(s)	40, 334, 419, 981, 1273
MbiI	CCGCTC	1 cut(s)	1319
MboI	GATC	5 cut(s)	38, 332, 417, 979, 1271
MboII	GAAGA	6 cut(s)	746, 770, 821, 827, 1115, 1148
MfeI	CAATTG	1 cut(s)	389
MflI	RGATCY	2 cut(s)	332, 1271
MhlI	GDGCHC	1 cut(s)	1123
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	8 cut(s)	155, 185, 368, 389, 541, 725, 1025, 1249
MluNI	TGGCCA	1 cut(s)	287
MlyI	GAGTC	2 cut(s)	347, 1274
MmeI	TCCRAC	2 cut(s)	445, 1159
Mox20I	TGGCCA	1 cut(s)	287
MroI	TCCGGA	1 cut(s)	951
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	7 cut(s)	30, 728, 936, 1074, 1194, 1296, 1375
MslI	CAYNNNNRTG	3 cut(s)	102, 138, 915
Msp20I	TGGCCA	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	1 cut(s)	952
MspR9I	CCNGG	2 cut(s)	168, 1257
MunI	CAATTG	1 cut(s)	389
MvaI	CCWGG	2 cut(s)	168, 1257
MwoI	GCNNNNNNNGC	1 cut(s)	13
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	5 cut(s)	38, 332, 417, 979, 1271
NlaIII	CATG	5 cut(s)	226, 286, 506, 554, 833
NlaIV	GGNNCC	5 cut(s)	469, 592, 649, 1053, 1120
NmeAIII	GCCGAG	1 cut(s)	1264
NmuCI	GTSAC	2 cut(s)	170, 235
PagI	TCATGA	1 cut(s)	502
PciSI	GCTCTTC	1 cut(s)	810
PfeI	GAWTC	2 cut(s)	674, 1340
PkrI	GCNGC	3 cut(s)	211, 214, 1171
PleI	GAGTC	2 cut(s)	346, 1274
PpsI	GAGTC	2 cut(s)	346, 1274
PshAI	GACNNNNGTC	1 cut(s)	498
PshBI	ATTAAT	2 cut(s)	1074, 1194
Psp6I	CCWGG	2 cut(s)	166, 1255
PspGI	CCWGG	2 cut(s)	166, 1255
PspN4I	GGNNCC	5 cut(s)	469, 592, 649, 1053, 1120
PspPI	GGNCC	2 cut(s)	377, 467
PstI	CTGCAG	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	2 cut(s)	332, 1271
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	1 cut(s)	592
RsaNI	GTAC	1 cut(s)	591
RseI	CAYNNNNRTG	3 cut(s)	102, 138, 915
SapI	GCTCTTC	1 cut(s)	810
SaqAI	TTAA	7 cut(s)	30, 728, 936, 1074, 1194, 1296, 1375
SatI	GCNGC	3 cut(s)	210, 213, 1170
Sau3AI	GATC	5 cut(s)	38, 332, 417, 979, 1271
Sau96I	GGNCC	2 cut(s)	377, 467
SchI	GAGTC	2 cut(s)	347, 1274
ScrFI	CCNGG	2 cut(s)	168, 1257
SduI	GDGCHC	1 cut(s)	1123
SfcI	CTRYAG	1 cut(s)	207
SinI	GGWCC	2 cut(s)	377, 467
SmiMI	CAYNNNNRTG	3 cut(s)	102, 138, 915
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	8 cut(s)	155, 185, 368, 389, 541, 725, 1025, 1249
SsiI	CCGC	2 cut(s)	1142, 1319
SspMI	CTAG	3 cut(s)	84, 455, 1079
StyD4I	CCNGG	2 cut(s)	166, 1255
StyI	CCWWGG	1 cut(s)	739
TaaI	ACNGT	4 cut(s)	311, 662, 716, 1373
TaiI	ACGT	2 cut(s)	559, 961
TasI	AATT	8 cut(s)	155, 185, 368, 389, 541, 725, 1025, 1249
TfiI	GAWTC	2 cut(s)	674, 1340
Tru1I	TTAA	7 cut(s)	30, 728, 936, 1074, 1194, 1296, 1375
Tru9I	TTAA	7 cut(s)	30, 728, 936, 1074, 1194, 1296, 1375
TscAI	CASTG	4 cut(s)	864, 894, 997, 1282
TseFI	GTSAC	2 cut(s)	170, 235
TseI	GCWGC	3 cut(s)	209, 212, 1169
Tsp45I	GTSAC	2 cut(s)	170, 235
TspDTI	ATGAA	4 cut(s)	122, 345, 414, 567
TspRI	CASTG	4 cut(s)	864, 894, 997, 1282
VpaK11BI	GGWCC	2 cut(s)	377, 467
VspI	ATTAAT	2 cut(s)	1074, 1194
XagI	CCTNNNNNAGG	1 cut(s)	743
XapI	RAATTY	6 cut(s)	155, 185, 368, 541, 1025, 1249
XbaI	TCTAGA	1 cut(s)	1078
XspI	CTAG	3 cut(s)	84, 455, 1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.