Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007524

Physical Location & Seq

Genomic Coordinates Forward (+)

24504156 .. 24508132

Gene Structure 3977 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G257400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGTTGTTTCTTTAAGTTTAGTGTCTATATTTATTGGAAAGGGCAAAATGATTAACAAACGGCCTTTTGGTGGTGAGGATTCTTATGAGGTTGCTTGTAAGCACCCAAGACAATTGGAACATTCTAATGAGGATATTTTTCCTTTTAATGGTGCTCCCCAGAAATTTCAAATTTCAGATGGTGAAGGTGATGGTGATGGGAGTTTTAGTAAATGTCCAGATGAAGGAAGGTTTGCAAGTGTCTTGGGAACTTCAGTCTCAAATGAGACCTACAAAGAACTTGAAACTGGTGCTTCTGGAAGCTTTGCCCGGTTTTTGTGGTCCAACAGCAGCATTATTGAAGCTAATGTAAGACCTGAGGCAGCATCTCATCTATCATTATTCCCAGAATTTTTTGCACCTGTAAACCAATGGAGGGCTTTACTTCATTCTGACAAGATCTGCTCATCTCCTGTTGATTATCCTCCTCGAAAGCTAGTTTCTATTGGTGCTCAGCATCAAGCTCATGTTCCAGTTTGGGGCTTTGAGGGTTCACACGCTTCAGTTCATCTAGAGAAATTGGATCCTCAACATGAGCCTTCATGTCCTTCCAGTCAGGATCTTGTTCTCGATGTTAACGAGGAGAAGCTGATGGGTACCCGTGTCATTTCTATGCCTGACCTTGAAGCATCTGCAGCAAACTATTTCTCTGAAGATGTGGGAGCTAGAAGCAACTGTAAGTGTGGTGATGCAGGTTCTGTTAGATGTGTGAGACAACATGTCATGGAAACAAGAGAGAAACTAAAAGAAGACCTTGGAGAGCACCTATTTGAAGAGTTGGGATTTTATGAAATGGGAGAGGGGGTTGCAGATAAATGGACTAAAGAGGAAAAGCATGCCTTCCATGATGTTGTCCTCTCTAACCCTGTATCATTGGGTAAGAACTTCTGGCACCACCTCTCCGTGGCTTTTCCTTCCCGAACACATAAAGACCTTGTCAGCTATTATTTTAATGTTTTCATGCTCCGTAAACGGACTGAGCAGAATAGGTTTGACCCTCTAAACATTGACAGTGACGATGATGAGTGGCAAAAAAGTGAACTTGGAACCGTAGAGGATGATGAGGACTCTGGGGTGGAATCTCCTGTCAATCTAGATGCTCCTGCCTATAATCAGGAAGAACACTTAGAGGGTTGCTATGAACACATTGAGGATGCATATGACGTAGATGGTTGTAGAGATGGCAACGATGTGGTTGATTGCATTGTAATGAAGGACAAGGACGGGGGTGATATAGATGATGGCTCAGGAGCTCATGTTGGGAGTTCCCCTGGTGATTCTGGTGGTACCGAAACTCAGATTTTGGACAAGATTGCTAGCAATAACAGAGAGCATTATGATATTCAAGATGATTCTTGCACATCATATGAGTATCAGCGAGACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

476

Amino Acids

52.82

Weight (kDa)

4.67

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47220 FvH4_6g47220 FvH4_6g47220
malus_domestica	MD00G1156000.v1.1 MD09G1062800.v1.1 MD17G1056700.v1.1
prunus_persica	Prupe.3G257400_v2.0.a1 Prupe.3G257400_v2.0.a1 Prupe.3G257400_v2.0.a1
pyrus_communis	pycom111g05320 pycom17g05680
rosa_chinensis	RchiOBHm_Chr2g0166271
rosa_laevigata	RLG00000021602
rosa_multiflora	Rmu_sc0016751.1_g000008 Rmu_sc0023080.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085030
rosa_rugosa	Rorug02G0521700 Rorug02G0521800
rosa_samantha	Rh2AG587800 Rh2BG599800 Rh2CG570100 Rh2CG570700 Rh2DG610000
rosa_wichuraiana	Rw0G003910 Rw2G048990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	722
Acc65I	GGTACC	2 cut(s)	635, 1325
AccB1I	GGYRCC	3 cut(s)	635, 930, 1325
AclWI	GGATC	3 cut(s)	557, 570, 606
AcsI	RAATTY	3 cut(s)	164, 171, 389
AcuI	CTGAAG	3 cut(s)	237, 525, 711
AfaI	GTAC	2 cut(s)	637, 1327
AfiI	CCNNNNNNNGG	6 cut(s)	71, 149, 224, 415, 518, 943
AflIII	ACRYGT	1 cut(s)	757
AgsI	TTSAA	6 cut(s)	170, 284, 341, 665, 812, 1385
AhdI	GACNNNNNGTC	1 cut(s)	758
AjnI	CCWGG	1 cut(s)	1309
AluBI	AGCT	8 cut(s)	303, 344, 475, 503, 628, 704, 981, 1292
AluI	AGCT	8 cut(s)	303, 344, 475, 503, 628, 704, 981, 1292
Alw21I	GWGCWC	4 cut(s)	157, 493, 804, 1294
Alw26I	GTCTC	4 cut(s)	260, 262, 745, 1413
AlwI	GGATC	3 cut(s)	557, 570, 606
AlwNI	CAGNNNCTG	1 cut(s)	737
AoxI	GGCC	1 cut(s)	62
ApeKI	GCWGC	3 cut(s)	330, 362, 674
ApoI	RAATTY	3 cut(s)	164, 171, 389
Asp718I	GGTACC	2 cut(s)	635, 1325
AspS9I	GGNCC	1 cut(s)	321
AsuC2I	CCSGG	1 cut(s)	310
AsuHPI	GGTGA	7 cut(s)	86, 194, 200, 206, 737, 1280, 1325
AsuNHI	GCTAGC	1 cut(s)	1355
AvaII	GGWCC	1 cut(s)	321
AxyI	CCTNAGG	1 cut(s)	357
BaeI	ACNNNNGTAYC	2 cut(s)	627, 660
BamHI	GGATCC	1 cut(s)	562
BanI	GGYRCC	3 cut(s)	635, 930, 1325
BanII	GRGCYC	1 cut(s)	1294
BbsI	GAAGAC	1 cut(s)	795
Bbv12I	GWGCWC	4 cut(s)	157, 493, 804, 1294
BbvI	GCAGC	3 cut(s)	342, 374, 686
BccI	CCATC	7 cut(s)	173, 185, 191, 625, 1202, 1214, 1274
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	1311
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	4 cut(s)	260, 262, 745, 1413
BfaI	CTAG	5 cut(s)	476, 551, 705, 1133, 1356
BfmI	CTRYAG	1 cut(s)	672
BfuAI	ACCTGC	1 cut(s)	722
BglII	AGATCT	1 cut(s)	438
BisI	GCNGC	3 cut(s)	331, 363, 675
BlpI	GCTNAGC	1 cut(s)	492
BlsI	GCNGC	3 cut(s)	332, 364, 676
Bme1390I	CCNGG	2 cut(s)	310, 1311
Bme18I	GGWCC	1 cut(s)	321
BmeRI	GACNNNNNGTC	1 cut(s)	758
BmgT120I	GGNCC	1 cut(s)	321
BmiI	GGNNCC	5 cut(s)	564, 637, 932, 1087, 1327
BmrFI	CCNGG	2 cut(s)	310, 1311
BmsI	GCATC	6 cut(s)	374, 505, 677, 718, 1126, 1183
BmtI	GCTAGC	1 cut(s)	1359
BpiI	GAAGAC	1 cut(s)	795
Bpu10I	CCTNAGC	1 cut(s)	1285
Bpu1102I	GCTNAGC	1 cut(s)	492
BpuMI	CCSGG	1 cut(s)	310
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	3 cut(s)	793, 942, 1309
BsaXI	ACNNNNNCTCC	8 cut(s)	193, 223, 828, 858, 923, 953, 1281, 1311
Bsc4I	CCNNNNNNNGG	6 cut(s)	71, 149, 224, 415, 518, 943
Bse1I	ACTGG	3 cut(s)	292, 512, 591
Bse21I	CCTNAGG	1 cut(s)	357
BseBI	CCWGG	1 cut(s)	1311
BseDI	CCNNGG	3 cut(s)	793, 942, 1309
BseGI	GGATG	2 cut(s)	1102, 1198
BseLI	CCNNNNNNNGG	6 cut(s)	71, 149, 224, 415, 518, 943
BseMII	CTCAG	5 cut(s)	348, 506, 1008, 1299, 1349
BseNI	ACTGG	3 cut(s)	292, 512, 591
BseRI	GAGGAG	2 cut(s)	456, 635
BseXI	GCAGC	3 cut(s)	342, 374, 686
BshFI	GGCC	1 cut(s)	64
BshNI	GGYRCC	3 cut(s)	635, 930, 1325
BsiHKAI	GWGCWC	4 cut(s)	157, 493, 804, 1294
BsiSI	CCGG	1 cut(s)	310
BslI	CCNNNNNNNGG	6 cut(s)	71, 149, 224, 415, 518, 943
BsmAI	GTCTC	4 cut(s)	260, 262, 745, 1413
BsnI	GGCC	1 cut(s)	64
Bso31I	GGTCTC	1 cut(s)	260
Bsp1286I	GDGCHC	4 cut(s)	157, 493, 804, 1294
Bsp143I	GATC	3 cut(s)	438, 562, 598
Bsp1720I	GCTNAGC	1 cut(s)	492
BspANI	GGCC	1 cut(s)	64
BspCNI	CTCAG	5 cut(s)	349, 505, 1009, 1298, 1348
BspLI	GGNNCC	5 cut(s)	564, 637, 932, 1087, 1327
BspMAI	CTGCAG	1 cut(s)	676
BspMI	ACCTGC	1 cut(s)	722
BspOI	GCTAGC	1 cut(s)	1359
BspPI	GGATC	3 cut(s)	557, 570, 606
BspT107I	GGYRCC	3 cut(s)	635, 930, 1325
BspTNI	GGTCTC	1 cut(s)	260
BsrI	ACTGG	3 cut(s)	292, 512, 591
BssECI	CCNNGG	3 cut(s)	793, 942, 1309
BssMI	GATC	3 cut(s)	438, 562, 598
BssT1I	CCWWGG	1 cut(s)	793
Bst2UI	CCWGG	1 cut(s)	1311
Bst4CI	ACNGT	4 cut(s)	716, 1052, 1090, 1424
Bst6I	CTCTTC	1 cut(s)	807
BstC8I	GCNNGC	2 cut(s)	876, 1357
BstDEI	CTNAG	6 cut(s)	357, 492, 1017, 1165, 1285, 1335
BstDSI	CCRYGG	1 cut(s)	942
BstF5I	GGATG	2 cut(s)	1102, 1198
BstKTI	GATC	3 cut(s)	441, 565, 601
BstMAI	GTCTC	4 cut(s)	260, 262, 745, 1413
BstMBI	GATC	3 cut(s)	438, 562, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	674
BstNI	CCWGG	1 cut(s)	1311
BstNSI	RCATGY	2 cut(s)	761, 878
BstSCI	CCNGG	2 cut(s)	308, 1309
BstSFI	CTRYAG	1 cut(s)	672
BstV1I	GCAGC	3 cut(s)	342, 374, 686
BstV2I	GAAGAC	1 cut(s)	795
BstX2I	RGATCY	3 cut(s)	438, 562, 598
BstYI	RGATCY	3 cut(s)	438, 562, 598
Bsu36I	CCTNAGG	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	64
BtgI	CCRYGG	1 cut(s)	942
BtsCI	GGATG	2 cut(s)	1102, 1198
BtsIMutI	CAGTG	1 cut(s)	1057
BveI	ACCTGC	1 cut(s)	722
Cac8I	GCNNGC	2 cut(s)	876, 1357
CaiI	CAGNNNCTG	1 cut(s)	737
Cfr13I	GGNCC	1 cut(s)	321
Csp6I	GTAC	2 cut(s)	636, 1326
CviAII	CATG	9 cut(s)	506, 572, 582, 758, 763, 875, 884, 1000, 1295
CviQI	GTAC	2 cut(s)	636, 1326
DdeI	CTNAG	6 cut(s)	357, 492, 1017, 1165, 1285, 1335
DpnI	GATC	3 cut(s)	440, 564, 600
DpnII	GATC	3 cut(s)	438, 562, 598
DriI	GACNNNNNGTC	1 cut(s)	758
Eam1104I	CTCTTC	1 cut(s)	807
Eam1105I	GACNNNNNGTC	1 cut(s)	758
EarI	CTCTTC	1 cut(s)	807
Ecl136II	GAGCTC	1 cut(s)	1292
Eco130I	CCWWGG	1 cut(s)	793
Eco24I	GRGCYC	1 cut(s)	1294
Eco31I	GGTCTC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	321
Eco53kI	GAGCTC	1 cut(s)	1292
Eco57I	CTGAAG	3 cut(s)	237, 525, 711
Eco81I	CCTNAGG	1 cut(s)	357
EcoICRI	GAGCTC	1 cut(s)	1292
EcoRII	CCWGG	1 cut(s)	1309
EcoT14I	CCWWGG	1 cut(s)	793
EcoT22I	ATGCAT	1 cut(s)	1198
EcoT38I	GRGCYC	1 cut(s)	1294
ErhI	CCWWGG	1 cut(s)	793
FaeI	CATG	9 cut(s)	509, 575, 585, 761, 766, 878, 887, 1003, 1298
FalI	AAGNNNNNCTT	4 cut(s)	777, 809, 863, 895
FatI	CATG	9 cut(s)	505, 571, 581, 757, 762, 874, 883, 999, 1294
FauNDI	CATATG	2 cut(s)	1198, 1405
Fnu4HI	GCNGC	3 cut(s)	331, 363, 675
FokI	GGATG	2 cut(s)	1109, 1205
FriOI	GRGCYC	1 cut(s)	1294
Fsp4HI	GCNGC	3 cut(s)	331, 363, 675
FspBI	CTAG	5 cut(s)	476, 551, 705, 1133, 1356
GluI	GCNGC	3 cut(s)	331, 363, 675
HaeIII	GGCC	1 cut(s)	64
HapII	CCGG	1 cut(s)	310
Hin1II	CATG	9 cut(s)	509, 575, 585, 761, 766, 878, 887, 1003, 1298
HincII	GTYRAC	1 cut(s)	616
HindII	GTYRAC	1 cut(s)	616
HindIII	AAGCTT	1 cut(s)	301
HinfI	GANTC	5 cut(s)	80, 1106, 1118, 1316, 1391
HpaI	GTTAAC	1 cut(s)	616
HpaII	CCGG	1 cut(s)	310
HphI	GGTGA	7 cut(s)	86, 194, 200, 206, 737, 1280, 1325
Hpy166II	GTNNAC	5 cut(s)	406, 533, 616, 1010, 1079
Hpy188I	TCNGA	4 cut(s)	178, 433, 691, 1338
Hpy8I	GTNNAC	5 cut(s)	406, 533, 616, 1010, 1079
HpyAV	CCTTC	8 cut(s)	179, 218, 222, 588, 597, 889, 963, 1246
HpyCH4III	ACNGT	4 cut(s)	716, 1052, 1090, 1424
HpyCH4IV	ACGT	1 cut(s)	1203
HpyCH4V	TGCA	8 cut(s)	236, 398, 674, 731, 848, 1196, 1242, 1398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	674
HpyF3I	CTNAG	6 cut(s)	357, 492, 1017, 1165, 1285, 1335
HpySE526I	ACGT	1 cut(s)	1203
Hsp92II	CATG	9 cut(s)	509, 575, 585, 761, 766, 878, 887, 1003, 1298
KpnI	GGTACC	2 cut(s)	639, 1329
KspAI	GTTAAC	1 cut(s)	616
Kzo9I	GATC	3 cut(s)	438, 562, 598
LmnI	GCTCC	5 cut(s)	160, 701, 1008, 1144, 1289
Lsp1109I	GCAGC	3 cut(s)	342, 374, 686
LweI	GCATC	6 cut(s)	374, 505, 677, 718, 1126, 1183
MaeI	CTAG	5 cut(s)	476, 551, 705, 1133, 1356
MaeII	ACGT	1 cut(s)	1203
MaeIII	GTNAC	1 cut(s)	1052
MalI	GATC	3 cut(s)	440, 564, 600
MboI	GATC	3 cut(s)	438, 562, 598
MboII	GAAGA	4 cut(s)	704, 800, 824, 1169
MfeI	CAATTG	1 cut(s)	113
MflI	RGATCY	3 cut(s)	438, 562, 598
MhlI	GDGCHC	4 cut(s)	157, 493, 804, 1294
MluCI	AATT	5 cut(s)	113, 164, 171, 389, 557
MlyI	GAGTC	1 cut(s)	1100
MmeI	TCCRAC	1 cut(s)	348
Mph1103I	ATGCAT	1 cut(s)	1198
MseI	TTAA	5 cut(s)	14, 54, 147, 615, 990
MslI	CAYNNNNRTG	3 cut(s)	126, 650, 1247
MspI	CCGG	1 cut(s)	310
MspR9I	CCNGG	2 cut(s)	310, 1311
MunI	CAATTG	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	1311
MwoI	GCNNNNNNNGC	1 cut(s)	674
NciI	CCSGG	1 cut(s)	310
NdeI	CATATG	2 cut(s)	1198, 1405
NdeII	GATC	3 cut(s)	438, 562, 598
NheI	GCTAGC	1 cut(s)	1355
NlaIII	CATG	9 cut(s)	509, 575, 585, 761, 766, 878, 887, 1003, 1298
NlaIV	GGNNCC	5 cut(s)	564, 637, 932, 1087, 1327
NmuCI	GTSAC	1 cut(s)	1052
NsiI	ATGCAT	1 cut(s)	1198
NspI	RCATGY	2 cut(s)	761, 878
PaeI	GCATGC	1 cut(s)	878
PciI	ACATGT	1 cut(s)	757
PcsI	WCGNNNNNNNCGW	1 cut(s)	615
PfeI	GAWTC	4 cut(s)	80, 1118, 1316, 1391
PflFI	GACNNNGTC	1 cut(s)	974
PkrI	GCNGC	3 cut(s)	332, 364, 676
PleI	GAGTC	1 cut(s)	1100
PpsI	GAGTC	1 cut(s)	1100
PscI	ACATGT	1 cut(s)	757
Psp124BI	GAGCTC	1 cut(s)	1294
Psp6I	CCWGG	1 cut(s)	1309
PspGI	CCWGG	1 cut(s)	1309
PspN4I	GGNNCC	5 cut(s)	564, 637, 932, 1087, 1327
PspPI	GGNCC	1 cut(s)	321
PstI	CTGCAG	1 cut(s)	676
PstNI	CAGNNNCTG	1 cut(s)	737
PsuI	RGATCY	3 cut(s)	438, 562, 598
PsyI	GACNNNGTC	1 cut(s)	974
RsaI	GTAC	2 cut(s)	637, 1327
RsaNI	GTAC	2 cut(s)	636, 1326
RseI	CAYNNNNRTG	3 cut(s)	126, 650, 1247
SacI	GAGCTC	1 cut(s)	1294
SaqAI	TTAA	5 cut(s)	14, 54, 147, 615, 990
SatI	GCNGC	3 cut(s)	331, 363, 675
Sau3AI	GATC	3 cut(s)	438, 562, 598
Sau96I	GGNCC	1 cut(s)	321
SchI	GAGTC	1 cut(s)	1100
ScrFI	CCNGG	2 cut(s)	310, 1311
SduI	GDGCHC	4 cut(s)	157, 493, 804, 1294
SfaNI	GCATC	6 cut(s)	374, 505, 677, 718, 1126, 1183
SfcI	CTRYAG	1 cut(s)	672
SinI	GGWCC	1 cut(s)	321
SmiMI	CAYNNNNRTG	3 cut(s)	126, 650, 1247
SphI	GCATGC	1 cut(s)	878
Sse9I	AATT	5 cut(s)	113, 164, 171, 389, 557
SspMI	CTAG	5 cut(s)	476, 551, 705, 1133, 1356
SstI	GAGCTC	1 cut(s)	1294
StyD4I	CCNGG	2 cut(s)	308, 1309
StyI	CCWWGG	1 cut(s)	793
TaaI	ACNGT	4 cut(s)	716, 1052, 1090, 1424
TaiI	ACGT	1 cut(s)	1206
TaqI	TCGA	2 cut(s)	469, 609
TasI	AATT	5 cut(s)	113, 164, 171, 389, 557
TfiI	GAWTC	4 cut(s)	80, 1118, 1316, 1391
Tru1I	TTAA	5 cut(s)	14, 54, 147, 615, 990
Tru9I	TTAA	5 cut(s)	14, 54, 147, 615, 990
TscAI	CASTG	1 cut(s)	1057
TseFI	GTSAC	1 cut(s)	1052
TseI	GCWGC	3 cut(s)	330, 362, 674
Tsp45I	GTSAC	1 cut(s)	1052
TspDTI	ATGAA	8 cut(s)	237, 416, 536, 570, 843, 988, 1194, 1265
TspGWI	ACGGA	3 cut(s)	931, 995, 1027
TspRI	CASTG	1 cut(s)	1057
Tth111I	GACNNNGTC	1 cut(s)	974
VpaK11BI	GGWCC	1 cut(s)	321
XapI	RAATTY	3 cut(s)	164, 171, 389
XbaI	TCTAGA	2 cut(s)	550, 1132
XceI	RCATGY	2 cut(s)	761, 878
XspI	CTAG	5 cut(s)	476, 551, 705, 1133, 1356
Zsp2I	ATGCAT	1 cut(s)	1198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.