Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00148

Orthogroup ID

OG0007524

Physical Location & Seq

Genomic Coordinates Reverse (-)

1797 .. 3428

Gene Structure 1632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G003910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGTGGCTTCACTTGCAGGACAAAATGATTAACAAACGATCTTTTGGTGATGAGGGTTCTTTTGAGGTTGCTTGTAAGCACCCTAGACATTTGGAACACTATAATGAGCCTGCTCCATATGTGGATGTTTTTCATTTTAGTGATGCTTCCCAGAAATTTCAAACTCCAGATGGCAAAGGTGACGGGAGTTGTAAATTTCAAGAGGAAGGAAGGTCTGCAGCTGCAAGGGACATGGCAACTGAAGTCACAAATGAGACCTACAAAGAACTTGAGACTGGTGCTTCCGGAAGCATGGCCAAATGTTTGTGGGTCAACAACAGTATTGTTGAAGCTAATGTAAGATCCGAGTCAGAAGCTCATCTTTCATTGTTCCCAGAATTTTTTGGACCTGTAAACCAATTGAGGGATATACATCATTCTGACAAGATCTGTTCATCTCCTCATCAAGCTTATGTTCCAGACTGCGGCCATGAGGGTTCACACACTTCAGAACATGAACGGCCTTTGGGTGTTGATGAGGAAAAGCTAATGGGTACCTGTGTCCTTTCTATGCCTGACCTTGAAGCATCTGCAAACTTTTGCTGTGAGGGAGCCAGAGACAACTGTATGTGTGCTGATTCAGGTTCTGTAAGATGTGTCAGACAGCACATCACAGACGGTAGAAAGAAATTAAGGGAAGACCTTGGGCAGGAGCTTTTTGAAGAGTTGGGCTTTTGTGATATGGGAGAGGAGGTTGCAGATAAATGGAGTGAAGAGGAAGAGCATCTGTTCCATGATGTTGTCCTCTCTAACCCTGCATCACTGGGTAAGAACTTCTGGCATAATCTCTCAGTGGCCTTTCCTTCACGAACGCATAAGGATGTTGTCAGCTATTATTTTAATGTGTTTATGCTCCGGAGGCGTGCTGAGCAGAATAGGTTTGATCCTCTAAACACTGATAGTGATGATGATGAGTTGCAAAAAAGTGAATTTGGACTGGTAGAGGATAATGAGGAGCCTGTGGTAGTATCTCCTATTAATCTAGATGCTTCTGCCTATAATGAGGAAGACCACTTACGGGGTGCCCAAGTATACATTGAAGATGCGGATGACATAGATGGTTATGACGATGCTGCCGTGGTTGGATGCAAAGGTATTAATGACAATGAGGGGGGTGATATAGATGATGGCTCAGGAGCCTCTCATGCTGGGAATTTCCCTGGTGATTGTGGCAGATCCACTGAATCTCGGCTTTTGTTTAAAACTTCTGAGACTGTTAGAGCAGATTATGATATTCAAGATGATTCTTGCACATCCTATGACTATCAGCAAGACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

439

Amino Acids

49.09

Weight (kDa)

4.53

Isoelectric Point (pI)

53.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47220 FvH4_6g47220 FvH4_6g47220
malus_domestica	MD00G1156000.v1.1 MD09G1062800.v1.1 MD17G1056700.v1.1
prunus_persica	Prupe.3G257400_v2.0.a1 Prupe.3G257400_v2.0.a1 Prupe.3G257400_v2.0.a1
pyrus_communis	pycom111g05320 pycom17g05680
rosa_chinensis	RchiOBHm_Chr2g0166271
rosa_laevigata	RLG00000021602
rosa_multiflora	Rmu_sc0016751.1_g000008 Rmu_sc0023080.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085030
rosa_rugosa	Rorug02G0521700 Rorug02G0521800
rosa_samantha	Rh2AG587800 Rh2BG599800 Rh2CG570100 Rh2CG570700 Rh2DG610000
rosa_wichuraiana	Rw0G003910 Rw2G048990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	533
AccB1I	GGYRCC	2 cut(s)	533, 1061
AccI	GTMKAC	1 cut(s)	1071
AccIII	TCCGGA	2 cut(s)	284, 894
AciI	CCGC	2 cut(s)	465, 1085
AclWI	GGATC	3 cut(s)	336, 917, 1209
AcoI	YGGCCR	2 cut(s)	294, 466
AcsI	RAATTY	5 cut(s)	155, 194, 377, 968, 1192
AcuI	CTGAAG	2 cut(s)	261, 471
AfaI	GTAC	1 cut(s)	535
AfiI	CCNNNNNNNGG	4 cut(s)	403, 464, 688, 1057
AgsI	TTSAA	7 cut(s)	161, 200, 329, 563, 701, 1079, 1277
AjnI	CCWGG	1 cut(s)	1198
AluBI	AGCT	7 cut(s)	221, 332, 356, 449, 526, 694, 870
AluI	AGCT	7 cut(s)	221, 332, 356, 449, 526, 694, 870
Alw26I	GTCTC	4 cut(s)	248, 266, 591, 1244
AlwI	GGATC	3 cut(s)	336, 917, 1209
AlwNI	CAGNNNCTG	1 cut(s)	626
Aor13HI	TCCGGA	2 cut(s)	284, 894
AoxI	GGCC	4 cut(s)	294, 466, 500, 834
ApeKI	GCWGC	3 cut(s)	218, 221, 1112
ApoI	RAATTY	5 cut(s)	155, 194, 377, 968, 1192
AseI	ATTAAT	2 cut(s)	1017, 1137
Asp718I	GGTACC	1 cut(s)	533
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	4 cut(s)	59, 191, 1166, 1214
AvaII	GGWCC	1 cut(s)	386
BaeGI	GKGCMC	1 cut(s)	1066
BaeI	ACNNNNGTAYC	2 cut(s)	525, 558
BalI	TGGCCA	1 cut(s)	296
BanI	GGYRCC	2 cut(s)	533, 1061
BarI	GAAGNNNNNNTAC	2 cut(s)	1038, 1070
BbsI	GAAGAC	2 cut(s)	684, 1053
BbvI	GCAGC	3 cut(s)	208, 230, 1099
BccI	CCATC	3 cut(s)	164, 1091, 1160
BceAI	ACGGC	2 cut(s)	515, 1100
BciT130I	CCWGG	1 cut(s)	1200
BcoDI	GTCTC	4 cut(s)	248, 266, 591, 1244
BfaI	CTAG	2 cut(s)	84, 1022
BfmI	CTRYAG	1 cut(s)	216
BglII	AGATCT	1 cut(s)	426
BisI	GCNGC	4 cut(s)	219, 222, 466, 1113
BlpI	GCTNAGC	1 cut(s)	906
BlsI	GCNGC	4 cut(s)	220, 223, 467, 1114
Bme1390I	CCNGG	1 cut(s)	1200
Bme18I	GGWCC	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	5 cut(s)	535, 592, 996, 1063, 1177
BmrFI	CCNGG	1 cut(s)	1200
BmrI	ACTGGG	1 cut(s)	812
BmsI	GCATC	8 cut(s)	133, 575, 772, 806, 1015, 1072, 1099, 1115
BmuI	ACTGGG	1 cut(s)	812
BpiI	GAAGAC	2 cut(s)	684, 1053
BpmI	CTGGAG	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	1171
Bpu1102I	GCTNAGC	1 cut(s)	906
BpuEI	CTTGAG	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	411
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	3 cut(s)	682, 1116, 1198
BsaWI	WCCGGW	2 cut(s)	284, 894
BsaXI	ACNNNNNCTCC	2 cut(s)	717, 747
Bsc4I	CCNNNNNNNGG	4 cut(s)	403, 464, 688, 1057
Bse1I	ACTGG	3 cut(s)	280, 807, 981
Bse8I	GATNNNNATC	1 cut(s)	411
BseAI	TCCGGA	2 cut(s)	284, 894
BseBI	CCWGG	1 cut(s)	1200
BseDI	CCNNGG	3 cut(s)	682, 1116, 1198
BseGI	GGATG	5 cut(s)	130, 865, 1093, 1130, 1292
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	4 cut(s)	403, 464, 688, 1057
BseMII	CTCAG	4 cut(s)	843, 897, 1185, 1239
BseNI	ACTGG	3 cut(s)	280, 807, 981
BseRI	GAGGAG	3 cut(s)	429, 743, 1007
BseSI	GKGCMC	1 cut(s)	1066
BseXI	GCAGC	3 cut(s)	208, 230, 1099
BseYI	CCCAGC	1 cut(s)	1187
BshFI	GGCC	4 cut(s)	296, 468, 502, 836
BshNI	GGYRCC	2 cut(s)	533, 1061
BsiSI	CCGG	2 cut(s)	285, 895
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	4 cut(s)	403, 464, 688, 1057
BsmAI	GTCTC	4 cut(s)	248, 266, 591, 1244
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	4 cut(s)	296, 468, 502, 836
Bso31I	GGTCTC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	1066
Bsp13I	TCCGGA	2 cut(s)	284, 894
Bsp143I	GATC	5 cut(s)	38, 341, 426, 922, 1214
Bsp1720I	GCTNAGC	1 cut(s)	906
BspACI	CCGC	2 cut(s)	465, 1085
BspANI	GGCC	4 cut(s)	296, 468, 502, 836
BspCNI	CTCAG	4 cut(s)	842, 898, 1184, 1240
BspEI	TCCGGA	2 cut(s)	284, 894
BspLI	GGNNCC	5 cut(s)	535, 592, 996, 1063, 1177
BspMAI	CTGCAG	1 cut(s)	220
BspPI	GGATC	3 cut(s)	336, 917, 1209
BspQI	GCTCTTC	1 cut(s)	753
BspT107I	GGYRCC	2 cut(s)	533, 1061
BspTNI	GGTCTC	1 cut(s)	248
BsrI	ACTGG	3 cut(s)	280, 807, 981
BssECI	CCNNGG	3 cut(s)	682, 1116, 1198
BssMI	GATC	5 cut(s)	38, 341, 426, 922, 1214
BssNAI	GTATAC	1 cut(s)	1072
BssT1I	CCWWGG	1 cut(s)	682
Bst1107I	GTATAC	1 cut(s)	1072
Bst2UI	CCWGG	1 cut(s)	1200
Bst4CI	ACNGT	5 cut(s)	320, 605, 659, 1255, 1316
Bst6I	CTCTTC	3 cut(s)	696, 747, 753
BstC8I	GCNNGC	2 cut(s)	111, 903
BstDEI	CTNAG	4 cut(s)	829, 906, 1171, 1248
BstDSI	CCRYGG	1 cut(s)	1116
BstENI	CCTNNNNNAGG	1 cut(s)	686
BstF5I	GGATG	5 cut(s)	130, 865, 1093, 1130, 1292
BstKTI	GATC	5 cut(s)	41, 344, 429, 925, 1217
BstMAI	GTCTC	4 cut(s)	248, 266, 591, 1244
BstMBI	GATC	5 cut(s)	38, 341, 426, 922, 1214
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 898, 907, 1184
BstNI	CCWGG	1 cut(s)	1200
BstSCI	CCNGG	1 cut(s)	1198
BstSFI	CTRYAG	1 cut(s)	216
BstSLI	GKGCMC	1 cut(s)	1066
BstV1I	GCAGC	3 cut(s)	208, 230, 1099
BstV2I	GAAGAC	2 cut(s)	684, 1053
BstX2I	RGATCY	3 cut(s)	341, 426, 1214
BstYI	RGATCY	3 cut(s)	341, 426, 1214
BstZ17I	GTATAC	1 cut(s)	1072
BsuRI	GGCC	4 cut(s)	296, 468, 502, 836
BtgI	CCRYGG	1 cut(s)	1116
BtsCI	GGATG	5 cut(s)	130, 865, 1093, 1130, 1292
BtsIMutI	CAGTG	4 cut(s)	800, 837, 933, 1218
Cac8I	GCNNGC	2 cut(s)	111, 903
CaiI	CAGNNNCTG	1 cut(s)	626
Cfr13I	GGNCC	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	534
CviAII	CATG	6 cut(s)	232, 292, 470, 494, 773, 1184
CviQI	GTAC	1 cut(s)	534
DdeI	CTNAG	4 cut(s)	829, 906, 1171, 1248
DpnI	GATC	5 cut(s)	40, 343, 428, 924, 1216
DpnII	GATC	5 cut(s)	38, 341, 426, 922, 1214
DraI	TTTAAA	1 cut(s)	1240
EaeI	YGGCCR	2 cut(s)	294, 466
Eam1104I	CTCTTC	3 cut(s)	696, 747, 753
EarI	CTCTTC	3 cut(s)	696, 747, 753
Eco130I	CCWWGG	1 cut(s)	682
Eco31I	GGTCTC	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	386
Eco57I	CTGAAG	2 cut(s)	261, 471
EcoNI	CCTNNNNNAGG	1 cut(s)	686
EcoRII	CCWGG	1 cut(s)	1198
EcoT14I	CCWWGG	1 cut(s)	682
ErhI	CCWWGG	1 cut(s)	682
FaeI	CATG	6 cut(s)	235, 295, 473, 497, 776, 1187
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	6 cut(s)	231, 291, 469, 493, 772, 1183
FauNDI	CATATG	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	1071
Fnu4HI	GCNGC	4 cut(s)	219, 222, 466, 1113
FokI	GGATG	5 cut(s)	137, 872, 1100, 1137, 1279
Fsp4HI	GCNGC	4 cut(s)	219, 222, 466, 1113
FspBI	CTAG	2 cut(s)	84, 1022
GluI	GCNGC	4 cut(s)	219, 222, 466, 1113
GsaI	CCCAGC	1 cut(s)	1191
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	4 cut(s)	296, 468, 502, 836
HapII	CCGG	2 cut(s)	285, 895
Hin1II	CATG	6 cut(s)	235, 295, 473, 497, 776, 1187
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	447
HinfI	GANTC	4 cut(s)	347, 617, 1223, 1283
HpaII	CCGG	2 cut(s)	285, 895
HphI	GGTGA	4 cut(s)	59, 191, 1166, 1214
Hpy166II	GTNNAC	4 cut(s)	313, 394, 479, 1072
Hpy188I	TCNGA	6 cut(s)	346, 352, 421, 490, 641, 1249
Hpy188III	TCNNGA	9 cut(s)	167, 200, 285, 458, 846, 895, 1022, 1173, 1277
Hpy8I	GTNNAC	4 cut(s)	313, 394, 479, 1072
HpyAV	CCTTC	3 cut(s)	200, 204, 852
HpyCH4III	ACNGT	5 cut(s)	320, 605, 659, 1255, 1316
HpyCH4V	TGCA	9 cut(s)	16, 218, 224, 572, 737, 797, 958, 1128, 1290
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 898, 907, 1184
HpyF3I	CTNAG	4 cut(s)	829, 906, 1171, 1248
Hsp92II	CATG	6 cut(s)	235, 295, 473, 497, 776, 1187
Kpn2I	TCCGGA	2 cut(s)	284, 894
KpnI	GGTACC	1 cut(s)	537
Kzo9I	GATC	5 cut(s)	38, 341, 426, 922, 1214
LguI	GCTCTTC	1 cut(s)	753
LmnI	GCTCC	6 cut(s)	118, 590, 691, 897, 994, 1175
Lsp1109I	GCAGC	3 cut(s)	208, 230, 1099
LweI	GCATC	8 cut(s)	133, 575, 772, 806, 1015, 1072, 1099, 1115
MaeI	CTAG	2 cut(s)	84, 1022
MaeIII	GTNAC	2 cut(s)	179, 244
MalI	GATC	5 cut(s)	40, 343, 428, 924, 1216
MboI	GATC	5 cut(s)	38, 341, 426, 922, 1214
MboII	GAAGA	6 cut(s)	689, 713, 764, 770, 1058, 1091
MfeI	CAATTG	1 cut(s)	398
MflI	RGATCY	3 cut(s)	341, 426, 1214
MhlI	GDGCHC	1 cut(s)	1066
MlsI	TGGCCA	1 cut(s)	296
MluCI	AATT	7 cut(s)	155, 194, 377, 398, 668, 968, 1192
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	1 cut(s)	1102
Mox20I	TGGCCA	1 cut(s)	296
MroI	TCCGGA	2 cut(s)	284, 894
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	7 cut(s)	30, 671, 879, 1017, 1137, 1239, 1318
MslI	CAYNNNNRTG	3 cut(s)	102, 138, 858
Msp20I	TGGCCA	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	2 cut(s)	285, 895
MspR9I	CCNGG	1 cut(s)	1200
MunI	CAATTG	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	1200
MwoI	GCNNNNNNNGC	4 cut(s)	13, 898, 907, 1184
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	5 cut(s)	38, 341, 426, 922, 1214
NlaIII	CATG	6 cut(s)	235, 295, 473, 497, 776, 1187
NlaIV	GGNNCC	5 cut(s)	535, 592, 996, 1063, 1177
NmeAIII	GCCGAG	1 cut(s)	1207
NmuCI	GTSAC	2 cut(s)	179, 244
PciSI	GCTCTTC	1 cut(s)	753
PcsI	WCGNNNNNNNCGW	1 cut(s)	1113
PfeI	GAWTC	3 cut(s)	617, 1223, 1283
PkrI	GCNGC	4 cut(s)	220, 223, 467, 1114
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
PshBI	ATTAAT	2 cut(s)	1017, 1137
Psp6I	CCWGG	1 cut(s)	1198
PspFI	CCCAGC	1 cut(s)	1187
PspGI	CCWGG	1 cut(s)	1198
PspN4I	GGNNCC	5 cut(s)	535, 592, 996, 1063, 1177
PspPI	GGNCC	1 cut(s)	386
PstI	CTGCAG	1 cut(s)	220
PstNI	CAGNNNCTG	1 cut(s)	626
PsuI	RGATCY	3 cut(s)	341, 426, 1214
PvuII	CAGCTG	1 cut(s)	221
RsaI	GTAC	1 cut(s)	535
RsaNI	GTAC	1 cut(s)	534
RseI	CAYNNNNRTG	3 cut(s)	102, 138, 858
SapI	GCTCTTC	1 cut(s)	753
SaqAI	TTAA	7 cut(s)	30, 671, 879, 1017, 1137, 1239, 1318
SatI	GCNGC	4 cut(s)	219, 222, 466, 1113
Sau3AI	GATC	5 cut(s)	38, 341, 426, 922, 1214
Sau96I	GGNCC	1 cut(s)	386
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	1 cut(s)	1200
SduI	GDGCHC	1 cut(s)	1066
SfaNI	GCATC	8 cut(s)	133, 575, 772, 806, 1015, 1072, 1099, 1115
SfcI	CTRYAG	1 cut(s)	216
SinI	GGWCC	1 cut(s)	386
SmiMI	CAYNNNNRTG	3 cut(s)	102, 138, 858
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	7 cut(s)	155, 194, 377, 398, 668, 968, 1192
SsiI	CCGC	2 cut(s)	465, 1085
SspMI	CTAG	2 cut(s)	84, 1022
StyD4I	CCNGG	1 cut(s)	1198
StyI	CCWWGG	1 cut(s)	682
TaaI	ACNGT	5 cut(s)	320, 605, 659, 1255, 1316
TasI	AATT	7 cut(s)	155, 194, 377, 398, 668, 968, 1192
TauI	GCSGC	1 cut(s)	468
TfiI	GAWTC	3 cut(s)	617, 1223, 1283
Tru1I	TTAA	7 cut(s)	30, 671, 879, 1017, 1137, 1239, 1318
Tru9I	TTAA	7 cut(s)	30, 671, 879, 1017, 1137, 1239, 1318
TscAI	CASTG	4 cut(s)	807, 837, 940, 1225
TseFI	GTSAC	2 cut(s)	179, 244
TseI	GCWGC	3 cut(s)	218, 221, 1112
Tsp45I	GTSAC	2 cut(s)	179, 244
TspDTI	ATGAA	4 cut(s)	122, 354, 423, 510
TspRI	CASTG	4 cut(s)	807, 837, 940, 1225
VpaK11BI	GGWCC	1 cut(s)	386
VspI	ATTAAT	2 cut(s)	1017, 1137
XagI	CCTNNNNNAGG	1 cut(s)	686
XapI	RAATTY	5 cut(s)	155, 194, 377, 968, 1192
XbaI	TCTAGA	1 cut(s)	1021
XmiI	GTMKAC	1 cut(s)	1071
XspI	CTAG	2 cut(s)	84, 1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.