Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0007524

Physical Location & Seq

Genomic Coordinates Reverse (-)

3417973 .. 3419052

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g05320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGTTTGAAGCTCATGTAAGACCTGAGGCAGCAGGGCATCTATCATTATTCCCAGAATTTTTTTCACCTGCAAACCATTTGAGGGCTTTTCTTCATTCTGATGTGATCTGCTCATCTCCTGTTGATTGTCCTCCTCAAAAGCTAGTTTCTATCGGACCTCAGCATCAAGCTTATGTTCCAGAATGGGGCCACGAGGGTTCACACTCTTCAAATCATCTGGAGAAATTGGATCCTCGGCGAGAAGTTTCATCCCAAGGCCTTGGTGTCAATCAGGAGAAGCTGATGGGTACCTGTATCATTTCTATGCCTGAGCTGGATACATTTGAAAACTATTTATGTGAAGATGTGAGAGCTAGAAACAACTGTAAGTGTGCTGATGCAGGCTCTGTTAGATGCGTGAGACAGCATGTCATGGAAGCAAAAGAGAAATTAAGGGAAGACCTTGGACATCACCTATTTGAAGAGTTGGGCTTTTATGAAATGGGAGAGGAGGTTGCAGAGAAATGGACTAAAGAGGAAGAGCGTGCCTTCCACGATGCCATCCTCTCTAACCCTGCATCATTGGGTAAGAACTTCTGGCACCACCTCTCAGTGGCTTTTCCTTTGCGACCACACAAAGACCTTGTCAGCTATTATTTCAATGTTTTCATGCTCCGTAAGCGTGCTGAGCAGAATAGGTTTGACCCTCTAAACATTGATAGTGACGATGATGAGTGGCAAAAGAGCGAACTTGGAGTGGTCAATGATGACAAGGACGCTTTGGTGGAATCTCCTGTAAATCTAAATGCTCCTGCCTATATCCAGGTAGAACATTTAGGCTGTTTCAATGAGCACATTGAGGATGCTGATGACGTAGATGGTTGTAATGATGGTGCCGATGTGGTTGGTTGTGATGGAATTAAGGACGAGGATGCAGGTGATATAGATGATGGCTCAGGAGCTCATGTTGAGAATCCCCCTGGTTATAGTGGTGGTGCTACTGAAACTCAGCTTTTGGATAAAACTCCTAGTAGCAACAGAGAGAATTATGATATTCAGGATGATTCTTGCACATCATATGAGTATCAGCAAGACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

360

Amino Acids

40.29

Weight (kDa)

4.61

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47220 FvH4_6g47220 FvH4_6g47220
malus_domestica	MD00G1156000.v1.1 MD09G1062800.v1.1 MD17G1056700.v1.1
prunus_persica	Prupe.3G257400_v2.0.a1 Prupe.3G257400_v2.0.a1 Prupe.3G257400_v2.0.a1
pyrus_communis	pycom111g05320 pycom17g05680
rosa_chinensis	RchiOBHm_Chr2g0166271
rosa_laevigata	RLG00000021602
rosa_multiflora	Rmu_sc0016751.1_g000008 Rmu_sc0023080.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085030
rosa_rugosa	Rorug02G0521700 Rorug02G0521800
rosa_samantha	Rh2AG587800 Rh2BG599800 Rh2CG570100 Rh2CG570700 Rh2DG610000
rosa_wichuraiana	Rw0G003910 Rw2G048990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	76, 905
Acc36I	ACCTGC	2 cut(s)	76, 905
Acc65I	GGTACC	1 cut(s)	287
AccB1I	GGYRCC	3 cut(s)	287, 579, 872
AclWI	GGATC	2 cut(s)	224, 237
AcsI	RAATTY	1 cut(s)	56
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	3 cut(s)	82, 185, 592
AgsI	TTSAA	6 cut(s)	8, 210, 326, 461, 640, 826
AhdI	GACNNNNNGTC	1 cut(s)	407
AjnI	CCWGG	2 cut(s)	801, 958
AluBI	AGCT	9 cut(s)	11, 142, 170, 280, 313, 353, 630, 941, 991
AluI	AGCT	9 cut(s)	11, 142, 170, 280, 313, 353, 630, 941, 991
Alw21I	GWGCWC	2 cut(s)	834, 943
Alw26I	GTCTC	1 cut(s)	394
AlwI	GGATC	2 cut(s)	224, 237
AlwNI	CAGNNNCTG	1 cut(s)	386
AoxI	GGCC	2 cut(s)	187, 256
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	56
ArsI	GACNNNNNNTTYG	2 cut(s)	609, 641
Asp718I	GGTACC	1 cut(s)	287
AspS9I	GGNCC	2 cut(s)	155, 187
AsuHPI	GGTGA	3 cut(s)	57, 443, 929
AvaII	GGWCC	1 cut(s)	155
AxyI	CCTNAGG	1 cut(s)	24
BamHI	GGATCC	1 cut(s)	229
BanI	GGYRCC	3 cut(s)	287, 579, 872
BanII	GRGCYC	1 cut(s)	943
BauI	CACGAG	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	444
Bbv12I	GWGCWC	2 cut(s)	834, 943
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	6 cut(s)	277, 548, 851, 863, 887, 923
BciT130I	CCWGG	2 cut(s)	803, 960
BciVI	GTATCC	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	394
BfaI	CTAG	3 cut(s)	143, 354, 1008
BfuAI	ACCTGC	2 cut(s)	76, 905
BfuI	GTATCC	1 cut(s)	310
BisI	GCNGC	1 cut(s)	30
BlpI	GCTNAGC	1 cut(s)	666
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	803, 960
Bme18I	GGWCC	1 cut(s)	155
BmeRI	GACNNNNNGTC	1 cut(s)	407
BmgT120I	GGNCC	2 cut(s)	155, 187
BmiI	GGNNCC	5 cut(s)	188, 231, 289, 581, 874
BmrFI	CCNGG	2 cut(s)	803, 960
BmsI	GCATC	8 cut(s)	46, 172, 367, 383, 526, 566, 832, 901
BpiI	GAAGAC	1 cut(s)	444
BpmI	CTGGAG	1 cut(s)	239
Bpu10I	CCTNAGC	3 cut(s)	159, 309, 934
Bpu1102I	GCTNAGC	1 cut(s)	666
BsaJI	CCNNGG	5 cut(s)	233, 253, 259, 442, 958
BsaXI	ACNNNNNCTCC	4 cut(s)	477, 507, 930, 960
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 185, 592
Bse21I	CCTNAGG	1 cut(s)	24
BseBI	CCWGG	2 cut(s)	803, 960
BseDI	CCNNGG	5 cut(s)	233, 253, 259, 442, 958
BseGI	GGATG	5 cut(s)	248, 540, 847, 916, 1045
BseLI	CCNNNNNNNGG	3 cut(s)	82, 185, 592
BseMII	CTCAG	7 cut(s)	15, 173, 300, 603, 657, 948, 1001
BseRI	GAGGAG	2 cut(s)	123, 503
BseXI	GCAGC	1 cut(s)	41
BshFI	GGCC	2 cut(s)	189, 258
BshNI	GGYRCC	3 cut(s)	287, 579, 872
BsiHKAI	GWGCWC	2 cut(s)	834, 943
BslI	CCNNNNNNNGG	3 cut(s)	82, 185, 592
BsmAI	GTCTC	1 cut(s)	394
BsnI	GGCC	2 cut(s)	189, 258
Bsp1286I	GDGCHC	2 cut(s)	834, 943
Bsp143I	GATC	2 cut(s)	105, 229
Bsp1720I	GCTNAGC	1 cut(s)	666
BspANI	GGCC	2 cut(s)	189, 258
BspCNI	CTCAG	7 cut(s)	16, 172, 301, 602, 658, 947, 1000
BspLI	GGNNCC	5 cut(s)	188, 231, 289, 581, 874
BspMI	ACCTGC	2 cut(s)	76, 905
BspPI	GGATC	2 cut(s)	224, 237
BspQI	GCTCTTC	1 cut(s)	513
BspT107I	GGYRCC	3 cut(s)	287, 579, 872
BssECI	CCNNGG	5 cut(s)	233, 253, 259, 442, 958
BssMI	GATC	2 cut(s)	105, 229
BssSI	CACGAG	1 cut(s)	191
BssT1I	CCWWGG	3 cut(s)	253, 259, 442
Bst2BI	CACGAG	1 cut(s)	191
Bst2UI	CCWGG	2 cut(s)	803, 960
Bst4CI	ACNGT	2 cut(s)	365, 1076
Bst6I	CTCTTC	3 cut(s)	211, 456, 513
BstC8I	GCNNGC	3 cut(s)	382, 525, 663
BstDEI	CTNAG	7 cut(s)	24, 159, 309, 589, 666, 934, 987
BstF5I	GGATG	5 cut(s)	248, 540, 847, 916, 1045
BstKTI	GATC	2 cut(s)	108, 232
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	2 cut(s)	105, 229
BstMWI	GCNNNNNNNGC	2 cut(s)	658, 667
BstNI	CCWGG	2 cut(s)	803, 960
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	2 cut(s)	801, 958
BstV1I	GCAGC	1 cut(s)	41
BstV2I	GAAGAC	1 cut(s)	444
BstX2I	RGATCY	1 cut(s)	229
BstXI	CCANNNNNNTGG	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	229
Bsu36I	CCTNAGG	1 cut(s)	24
BsuI	GTATCC	1 cut(s)	310
BsuRI	GGCC	2 cut(s)	189, 258
BtsCI	GGATG	5 cut(s)	248, 540, 847, 916, 1045
BtsIMutI	CAGTG	1 cut(s)	597
BveI	ACCTGC	2 cut(s)	76, 905
Cac8I	GCNNGC	3 cut(s)	382, 525, 663
CaiI	CAGNNNCTG	1 cut(s)	386
Cfr13I	GGNCC	2 cut(s)	155, 187
CseI	GACGC	1 cut(s)	764
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	5 cut(s)	14, 407, 412, 649, 944
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	7 cut(s)	24, 159, 309, 589, 666, 934, 987
DpnI	GATC	2 cut(s)	107, 231
DpnII	GATC	2 cut(s)	105, 229
DriI	GACNNNNNGTC	1 cut(s)	407
Eam1104I	CTCTTC	3 cut(s)	211, 456, 513
Eam1105I	GACNNNNNGTC	1 cut(s)	407
EarI	CTCTTC	3 cut(s)	211, 456, 513
Ecl136II	GAGCTC	1 cut(s)	941
Eco130I	CCWWGG	3 cut(s)	253, 259, 442
Eco147I	AGGCCT	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	943
Eco47I	GGWCC	1 cut(s)	155
Eco53kI	GAGCTC	1 cut(s)	941
Eco81I	CCTNAGG	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	941
EcoRII	CCWGG	2 cut(s)	801, 958
EcoT14I	CCWWGG	3 cut(s)	253, 259, 442
EcoT38I	GRGCYC	1 cut(s)	943
ErhI	CCWWGG	3 cut(s)	253, 259, 442
FaeI	CATG	5 cut(s)	17, 410, 415, 652, 947
FatI	CATG	5 cut(s)	13, 406, 411, 648, 943
FauNDI	CATATG	1 cut(s)	1057
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	5 cut(s)	235, 527, 854, 923, 1052
FriOI	GRGCYC	1 cut(s)	943
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	3 cut(s)	143, 354, 1008
GluI	GCNGC	1 cut(s)	30
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	2 cut(s)	189, 258
HgaI	GACGC	1 cut(s)	764
Hin1II	CATG	5 cut(s)	17, 410, 415, 652, 947
HindIII	AAGCTT	1 cut(s)	168
HinfI	GANTC	3 cut(s)	767, 952, 1043
HphI	GGTGA	3 cut(s)	57, 443, 929
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	2 cut(s)	100, 155
Hpy188III	TCNNGA	5 cut(s)	179, 218, 272, 936, 1037
Hpy8I	GTNNAC	1 cut(s)	200
HpyAV	CCTTC	1 cut(s)	538
HpyCH4III	ACNGT	2 cut(s)	365, 1076
HpyCH4IV	ACGT	1 cut(s)	852
HpyCH4V	TGCA	6 cut(s)	71, 380, 497, 557, 914, 1050
HpyF10VI	GCNNNNNNNGC	2 cut(s)	658, 667
HpyF3I	CTNAG	7 cut(s)	24, 159, 309, 589, 666, 934, 987
HpySE526I	ACGT	1 cut(s)	852
Hsp92II	CATG	5 cut(s)	17, 410, 415, 652, 947
KpnI	GGTACC	1 cut(s)	291
Kzo9I	GATC	2 cut(s)	105, 229
LguI	GCTCTTC	1 cut(s)	513
LmnI	GCTCC	3 cut(s)	657, 793, 938
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	8 cut(s)	46, 172, 367, 383, 526, 566, 832, 901
MaeI	CTAG	3 cut(s)	143, 354, 1008
MaeII	ACGT	1 cut(s)	852
MaeIII	GTNAC	1 cut(s)	701
MalI	GATC	2 cut(s)	107, 231
MboI	GATC	2 cut(s)	105, 229
MboII	GAAGA	6 cut(s)	83, 198, 353, 449, 473, 530
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	2 cut(s)	834, 943
MluCI	AATT	5 cut(s)	56, 224, 428, 897, 1024
MseI	TTAA	2 cut(s)	431, 900
MslI	CAYNNNNRTG	2 cut(s)	99, 302
MspR9I	CCNGG	2 cut(s)	803, 960
MvaI	CCWGG	2 cut(s)	803, 960
MwoI	GCNNNNNNNGC	2 cut(s)	658, 667
NdeI	CATATG	1 cut(s)	1057
NdeII	GATC	2 cut(s)	105, 229
NlaIII	CATG	5 cut(s)	17, 410, 415, 652, 947
NlaIV	GGNNCC	5 cut(s)	188, 231, 289, 581, 874
NmeAIII	GCCGAG	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	701
NspI	RCATGY	1 cut(s)	410
PaqCI	CACCTGC	2 cut(s)	76, 905
PceI	AGGCCT	1 cut(s)	258
PciSI	GCTCTTC	1 cut(s)	513
PfeI	GAWTC	3 cut(s)	767, 952, 1043
PflFI	GACNNNGTC	1 cut(s)	623
PkrI	GCNGC	1 cut(s)	31
Psp124BI	GAGCTC	1 cut(s)	943
Psp6I	CCWGG	2 cut(s)	801, 958
PspGI	CCWGG	2 cut(s)	801, 958
PspN4I	GGNNCC	5 cut(s)	188, 231, 289, 581, 874
PspPI	GGNCC	2 cut(s)	155, 187
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	229
PsyI	GACNNNGTC	1 cut(s)	623
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
RseI	CAYNNNNRTG	2 cut(s)	99, 302
SacI	GAGCTC	1 cut(s)	943
SapI	GCTCTTC	1 cut(s)	513
SaqAI	TTAA	2 cut(s)	431, 900
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	105, 229
Sau96I	GGNCC	2 cut(s)	155, 187
ScrFI	CCNGG	2 cut(s)	803, 960
SduI	GDGCHC	2 cut(s)	834, 943
SfaNI	GCATC	8 cut(s)	46, 172, 367, 383, 526, 566, 832, 901
SinI	GGWCC	1 cut(s)	155
SmiMI	CAYNNNNRTG	2 cut(s)	99, 302
Sse9I	AATT	5 cut(s)	56, 224, 428, 897, 1024
SseBI	AGGCCT	1 cut(s)	258
SspMI	CTAG	3 cut(s)	143, 354, 1008
SstI	GAGCTC	1 cut(s)	943
StuI	AGGCCT	1 cut(s)	258
StyD4I	CCNGG	2 cut(s)	801, 958
StyI	CCWWGG	3 cut(s)	253, 259, 442
TaaI	ACNGT	2 cut(s)	365, 1076
TaiI	ACGT	1 cut(s)	855
TasI	AATT	5 cut(s)	56, 224, 428, 897, 1024
TfiI	GAWTC	3 cut(s)	767, 952, 1043
Tru1I	TTAA	2 cut(s)	431, 900
Tru9I	TTAA	2 cut(s)	431, 900
TscAI	CASTG	1 cut(s)	597
TseFI	GTSAC	1 cut(s)	701
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	701
TspDTI	ATGAA	4 cut(s)	83, 237, 492, 637
TspGWI	ACGGA	1 cut(s)	644
TspRI	CASTG	1 cut(s)	597
Tth111I	GACNNNGTC	1 cut(s)	623
VpaK11BI	GGWCC	1 cut(s)	155
XapI	RAATTY	1 cut(s)	56
XceI	RCATGY	1 cut(s)	410
XspI	CTAG	3 cut(s)	143, 354, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.