Rroxscaffold_2G00085030
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0007524
Physical Location & Seq
Reverse (-)
7449321 .. 7452614
3294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00085030.1

Sequence Viewer

Length: 1206 bp
ATGATTAACAAACGATCTTTTGGTGATGAGGGTTCTTTTGAGGTTGCTTGTAAGCACCCTAGACATTTGGAACACTATAATGAGCCTGCTCCATATGTGGATGTTTTTCATTTTAGTGATGCTTCCCAGAAATTTCAAACTCCAGATGGCAAAGGTGACGGGAGTTGTAAATTTCAAGAGGAAGGAAGGTCTGCAGCTGCAAGGGACGCAACTGAGGTCACAAATGAGACCTACAAAGAACTTGAGACTGGTGCTTCCGGAAGCATGGCCAAATATTTGTGGGTCAACAACAGTATTGTTGAAGCTAATGTAAGATCCGAGTCAGAAGCTCATCTTTCATTGTTCCCAGAATTTTTTGGACCTGTAAACCAATTGAGGGATATACATCATTCTGACAAGATCTGTTCATCTCCTGTTGATTATTCTCCTCATTACCTAGTCTCTGTTGGACCCGAGCATCAAGCTTATGTTCCAGACTGGGGCCATGAGGGTTCACACACTTCAGATAATCCTGCAAACTTGGATTTTCAACATGAACGTCCTTTGGGTGTTGATGAGGAAAAGCTAATGGGTACCTGTGTCCTTTCTATGCCTGACCTTGAAGCATCTGCAAACTTTTGCTGTGAAGATGTGGGAGCCAGAGACAACTGTATGTGTGCTGATTCAGGTTCTGTAAGATGTGTCAGACAGCACATCACAGACGCTAGAGAGAAATTAAGGGAAGACCTTGGGAAGGAGCTTTTTGAAGAGTTGGGCTTTTGTGATATGGGAGAGGAGGTTGCAGATAAATGGAGTGAAGAGGAAGAGCATCTGTTCCATGATGTTGTCCTCTCTAACCCTGCATCATTGGGTAAGAACTTCTGGCATAATCTCTCAGTGGCCTTTCCTTCACGAATGCATAAGGATGTTATCAGCTATTATTTTAATGTGTTTATGCTCCGGAGGCGTGCTGAGCAGAATAGGTTTGATCCTCTAAACACTGATAGTGATGATGATGAGTTGCAAAAAAGTGAATTTGGACTGGTAGAGGATAATGAGGAGCCTGTGGTAGTATCTCCTATTAATCTAGATGCTTCTGCCTATAATGAGGAAGACCACTTACGGGGTGCCCAAGAATACATTGAAGATGCGGATGACATAGATGGTTATGACGATGCTGCCGTGGTGGGATGCAAAGGTGTTAATGACAATGAGGGGGTGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

401

Amino Acids

45.05

Weight (kDa)

4.52

Isoelectric Point (pI)

51.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 572
AccB1I GGYRCC 2 cut(s) 572, 1106
AccIII TCCGGA 2 cut(s) 257, 939
AciI CCGC 1 cut(s) 1130
AclWI GGATC 2 cut(s) 309, 962
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 4 cut(s) 131, 170, 350, 1013
AcuI CTGAAG 1 cut(s) 486
AfaI GTAC 1 cut(s) 574
AfiI CCNNNNNNNGG 4 cut(s) 376, 479, 733, 1102
AgsI TTSAA 7 cut(s) 137, 176, 302, 530, 602, 746, 1124
AluBI AGCT 7 cut(s) 197, 305, 329, 464, 565, 739, 915
AluI AGCT 7 cut(s) 197, 305, 329, 464, 565, 739, 915
Alw26I GTCTC 4 cut(s) 221, 239, 445, 636
AlwI GGATC 2 cut(s) 309, 962
AlwNI CAGNNNCTG 1 cut(s) 671
Ama87I CYCGRG 1 cut(s) 452
Aor13HI TCCGGA 2 cut(s) 257, 939
AoxI GGCC 3 cut(s) 267, 481, 879
ApeKI GCWGC 3 cut(s) 194, 197, 1157
ApoI RAATTY 4 cut(s) 131, 170, 350, 1013
AseI ATTAAT 1 cut(s) 1062
Asp718I GGTACC 1 cut(s) 572
AspS9I GGNCC 3 cut(s) 359, 449, 481
AsuHPI GGTGA 2 cut(s) 35, 167
AvaI CYCGRG 1 cut(s) 452
AvaII GGWCC 2 cut(s) 359, 449
BaeGI GKGCMC 1 cut(s) 1111
BaeI ACNNNNGTAYC 2 cut(s) 564, 597
BalI TGGCCA 1 cut(s) 269
BanI GGYRCC 2 cut(s) 572, 1106
BarI GAAGNNNNNNTAC 2 cut(s) 1083, 1115
BbsI GAAGAC 2 cut(s) 729, 1098
BbvI GCAGC 3 cut(s) 184, 206, 1144
BccI CCATC 2 cut(s) 140, 1136
BceAI ACGGC 1 cut(s) 1145
BcoDI GTCTC 4 cut(s) 221, 239, 445, 636
BfaI CTAG 4 cut(s) 60, 437, 705, 1067
BfmI CTRYAG 1 cut(s) 192
BglII AGATCT 1 cut(s) 399
BisI GCNGC 3 cut(s) 195, 198, 1158
BlpI GCTNAGC 1 cut(s) 951
BlsI GCNGC 3 cut(s) 196, 199, 1159
Bme18I GGWCC 2 cut(s) 359, 449
BmeT110I CYCGRG 1 cut(s) 452
BmgT120I GGNCC 3 cut(s) 359, 449, 481
BmiI GGNNCC 6 cut(s) 451, 482, 574, 637, 1041, 1108
BmrI ACTGGG 1 cut(s) 487
BmsI GCATC 9 cut(s) 109, 466, 614, 817, 851, 1060, 1117, 1144, 1160
BmuI ACTGGG 1 cut(s) 487
BpiI GAAGAC 2 cut(s) 729, 1098
BpmI CTGGAG 1 cut(s) 126
Bpu1102I GCTNAGC 1 cut(s) 951
BpuEI CTTGAG 1 cut(s) 263
BsaBI GATNNNNATC 1 cut(s) 384
BsaI GGTCTC 1 cut(s) 221
BsaJI CCNNGG 2 cut(s) 727, 1161
BsaWI WCCGGW 2 cut(s) 257, 939
BsaXI ACNNNNNCTCC 2 cut(s) 762, 792
Bsc4I CCNNNNNNNGG 4 cut(s) 376, 479, 733, 1102
Bse1I ACTGG 3 cut(s) 253, 482, 1026
Bse8I GATNNNNATC 1 cut(s) 384
BseAI TCCGGA 2 cut(s) 257, 939
BseDI CCNNGG 2 cut(s) 727, 1161
BseGI GGATG 4 cut(s) 106, 910, 1138, 1175
BseJI GATNNNNATC 1 cut(s) 384
BseLI CCNNNNNNNGG 4 cut(s) 376, 479, 733, 1102
BseMII CTCAG 3 cut(s) 204, 888, 942
BseNI ACTGG 3 cut(s) 253, 482, 1026
BseRI GAGGAG 3 cut(s) 417, 788, 1052
BseSI GKGCMC 1 cut(s) 1111
BseXI GCAGC 3 cut(s) 184, 206, 1144
BshFI GGCC 3 cut(s) 269, 483, 881
BshNI GGYRCC 2 cut(s) 572, 1106
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 2 cut(s) 258, 940
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 4 cut(s) 376, 479, 733, 1102
BsmAI GTCTC 4 cut(s) 221, 239, 445, 636
BsmFI GGGAC 1 cut(s) 218
BsmI GAATGC 1 cut(s) 900
BsnI GGCC 3 cut(s) 269, 483, 881
Bso31I GGTCTC 1 cut(s) 221
BsoBI CYCGRG 1 cut(s) 452
Bsp1286I GDGCHC 1 cut(s) 1111
Bsp13I TCCGGA 2 cut(s) 257, 939
Bsp143I GATC 4 cut(s) 14, 314, 399, 967
Bsp1720I GCTNAGC 1 cut(s) 951
BspACI CCGC 1 cut(s) 1130
BspANI GGCC 3 cut(s) 269, 483, 881
BspCNI CTCAG 3 cut(s) 205, 887, 943
BspEI TCCGGA 2 cut(s) 257, 939
BspLI GGNNCC 6 cut(s) 451, 482, 574, 637, 1041, 1108
BspMAI CTGCAG 1 cut(s) 196
BspPI GGATC 2 cut(s) 309, 962
BspQI GCTCTTC 1 cut(s) 798
BspT107I GGYRCC 2 cut(s) 572, 1106
BspTNI GGTCTC 1 cut(s) 221
BsrI ACTGG 3 cut(s) 253, 482, 1026
BssECI CCNNGG 2 cut(s) 727, 1161
BssMI GATC 4 cut(s) 14, 314, 399, 967
BssT1I CCWWGG 1 cut(s) 727
Bst4CI ACNGT 2 cut(s) 293, 650
Bst6I CTCTTC 3 cut(s) 741, 792, 798
BstC8I GCNNGC 2 cut(s) 87, 948
BstDEI CTNAG 3 cut(s) 213, 874, 951
BstDSI CCRYGG 1 cut(s) 1161
BstENI CCTNNNNNAGG 1 cut(s) 731
BstF5I GGATG 4 cut(s) 106, 910, 1138, 1175
BstKTI GATC 4 cut(s) 17, 317, 402, 970
BstMAI GTCTC 4 cut(s) 221, 239, 445, 636
BstMBI GATC 4 cut(s) 14, 314, 399, 967
BstMWI GCNNNNNNNGC 3 cut(s) 206, 943, 952
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 1 cut(s) 1111
BstV1I GCAGC 3 cut(s) 184, 206, 1144
BstV2I GAAGAC 2 cut(s) 729, 1098
BstX2I RGATCY 2 cut(s) 314, 399
BstYI RGATCY 2 cut(s) 314, 399
BsuRI GGCC 3 cut(s) 269, 483, 881
BtgI CCRYGG 1 cut(s) 1161
BtsCI GGATG 4 cut(s) 106, 910, 1138, 1175
BtsIMutI CAGTG 2 cut(s) 882, 978
Cac8I GCNNGC 2 cut(s) 87, 948
CaiI CAGNNNCTG 1 cut(s) 671
Cfr13I GGNCC 3 cut(s) 359, 449, 481
CseI GACGC 2 cut(s) 215, 710
Csp6I GTAC 1 cut(s) 573
CviAII CATG 4 cut(s) 265, 485, 533, 818
CviQI GTAC 1 cut(s) 573
DdeI CTNAG 3 cut(s) 213, 874, 951
DpnI GATC 4 cut(s) 16, 316, 401, 969
DpnII GATC 4 cut(s) 14, 314, 399, 967
EaeI YGGCCR 1 cut(s) 267
Eam1104I CTCTTC 3 cut(s) 741, 792, 798
EarI CTCTTC 3 cut(s) 741, 792, 798
Eco130I CCWWGG 1 cut(s) 727
Eco31I GGTCTC 1 cut(s) 221
Eco47I GGWCC 2 cut(s) 359, 449
Eco57I CTGAAG 1 cut(s) 486
Eco88I CYCGRG 1 cut(s) 452
EcoNI CCTNNNNNAGG 1 cut(s) 731
EcoT14I CCWWGG 1 cut(s) 727
EcoT22I ATGCAT 1 cut(s) 900
ErhI CCWWGG 1 cut(s) 727
FaeI CATG 4 cut(s) 268, 488, 536, 821
FalI AAGNNNNNCTT 2 cut(s) 318, 350
FaqI GGGAC 1 cut(s) 218
FatI CATG 4 cut(s) 264, 484, 532, 817
FauNDI CATATG 1 cut(s) 94
Fnu4HI GCNGC 3 cut(s) 195, 198, 1158
FokI GGATG 4 cut(s) 113, 917, 1145, 1182
Fsp4HI GCNGC 3 cut(s) 195, 198, 1158
FspBI CTAG 4 cut(s) 60, 437, 705, 1067
GluI GCNGC 3 cut(s) 195, 198, 1158
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 3 cut(s) 269, 483, 881
HapII CCGG 2 cut(s) 258, 940
HgaI GACGC 2 cut(s) 215, 710
Hin1II CATG 4 cut(s) 268, 488, 536, 821
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HindIII AAGCTT 1 cut(s) 462
HinfI GANTC 2 cut(s) 320, 662
HpaII CCGG 2 cut(s) 258, 940
HphI GGTGA 2 cut(s) 35, 167
Hpy166II GTNNAC 3 cut(s) 286, 367, 494
Hpy188I TCNGA 5 cut(s) 319, 325, 394, 505, 686
Hpy188III TCNNGA 7 cut(s) 143, 176, 258, 473, 891, 940, 1067
Hpy8I GTNNAC 3 cut(s) 286, 367, 494
HpyAV CCTTC 4 cut(s) 176, 180, 727, 897
HpyCH4III ACNGT 2 cut(s) 293, 650
HpyCH4IV ACGT 1 cut(s) 538
HpyCH4V TGCA 9 cut(s) 194, 200, 515, 611, 782, 842, 898, 1003, 1173
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 943, 952
HpyF3I CTNAG 3 cut(s) 213, 874, 951
HpySE526I ACGT 1 cut(s) 538
Hsp92II CATG 4 cut(s) 268, 488, 536, 821
Kpn2I TCCGGA 2 cut(s) 257, 939
KpnI GGTACC 1 cut(s) 576
Kzo9I GATC 4 cut(s) 14, 314, 399, 967
LguI GCTCTTC 1 cut(s) 798
LmnI GCTCC 5 cut(s) 94, 635, 736, 942, 1039
Lsp1109I GCAGC 3 cut(s) 184, 206, 1144
LweI GCATC 9 cut(s) 109, 466, 614, 817, 851, 1060, 1117, 1144, 1160
MaeI CTAG 4 cut(s) 60, 437, 705, 1067
MaeII ACGT 1 cut(s) 538
MaeIII GTNAC 2 cut(s) 155, 217
MalI GATC 4 cut(s) 16, 316, 401, 969
MboI GATC 4 cut(s) 14, 314, 399, 967
MboII GAAGA 7 cut(s) 638, 734, 758, 809, 815, 1103, 1136
MfeI CAATTG 1 cut(s) 371
MflI RGATCY 2 cut(s) 314, 399
MhlI GDGCHC 1 cut(s) 1111
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 6 cut(s) 131, 170, 350, 371, 713, 1013
MluNI TGGCCA 1 cut(s) 269
MlyI GAGTC 1 cut(s) 329
MmeI TCCRAC 1 cut(s) 427
Mox20I TGGCCA 1 cut(s) 269
Mph1103I ATGCAT 1 cut(s) 900
MroI TCCGGA 2 cut(s) 257, 939
MscI TGGCCA 1 cut(s) 269
MseI TTAA 5 cut(s) 6, 716, 924, 1062, 1182
MslI CAYNNNNRTG 3 cut(s) 78, 114, 903
Msp20I TGGCCA 1 cut(s) 269
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 2 cut(s) 258, 940
MunI CAATTG 1 cut(s) 371
Mva1269I GAATGC 1 cut(s) 900
MwoI GCNNNNNNNGC 3 cut(s) 206, 943, 952
NdeI CATATG 1 cut(s) 94
NdeII GATC 4 cut(s) 14, 314, 399, 967
NlaIII CATG 4 cut(s) 268, 488, 536, 821
NlaIV GGNNCC 6 cut(s) 451, 482, 574, 637, 1041, 1108
NmuCI GTSAC 2 cut(s) 155, 217
NsiI ATGCAT 1 cut(s) 900
PciSI GCTCTTC 1 cut(s) 798
PcsI WCGNNNNNNNCGW 1 cut(s) 1158
PctI GAATGC 1 cut(s) 900
PfeI GAWTC 1 cut(s) 662
PkrI GCNGC 3 cut(s) 196, 199, 1159
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
PshBI ATTAAT 1 cut(s) 1062
PspN4I GGNNCC 6 cut(s) 451, 482, 574, 637, 1041, 1108
PspPI GGNCC 3 cut(s) 359, 449, 481
PstI CTGCAG 1 cut(s) 196
PstNI CAGNNNCTG 1 cut(s) 671
PsuI RGATCY 2 cut(s) 314, 399
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 1 cut(s) 574
RsaNI GTAC 1 cut(s) 573
RseI CAYNNNNRTG 3 cut(s) 78, 114, 903
SapI GCTCTTC 1 cut(s) 798
SaqAI TTAA 5 cut(s) 6, 716, 924, 1062, 1182
SatI GCNGC 3 cut(s) 195, 198, 1158
Sau3AI GATC 4 cut(s) 14, 314, 399, 967
Sau96I GGNCC 3 cut(s) 359, 449, 481
SchI GAGTC 1 cut(s) 329
SduI GDGCHC 1 cut(s) 1111
SfaNI GCATC 9 cut(s) 109, 466, 614, 817, 851, 1060, 1117, 1144, 1160
SfcI CTRYAG 1 cut(s) 192
SinI GGWCC 2 cut(s) 359, 449
SmiMI CAYNNNNRTG 3 cut(s) 78, 114, 903
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 6 cut(s) 131, 170, 350, 371, 713, 1013
SsiI CCGC 1 cut(s) 1130
SspI AATATT 1 cut(s) 275
SspMI CTAG 4 cut(s) 60, 437, 705, 1067
StyI CCWWGG 1 cut(s) 727
TaaI ACNGT 2 cut(s) 293, 650
TaiI ACGT 1 cut(s) 541
TasI AATT 6 cut(s) 131, 170, 350, 371, 713, 1013
TfiI GAWTC 1 cut(s) 662
Tru1I TTAA 5 cut(s) 6, 716, 924, 1062, 1182
Tru9I TTAA 5 cut(s) 6, 716, 924, 1062, 1182
TscAI CASTG 2 cut(s) 882, 985
TseFI GTSAC 2 cut(s) 155, 217
TseI GCWGC 3 cut(s) 194, 197, 1157
Tsp45I GTSAC 2 cut(s) 155, 217
TspDTI ATGAA 4 cut(s) 98, 327, 396, 549
TspRI CASTG 2 cut(s) 882, 985
VpaK11BI GGWCC 2 cut(s) 359, 449
VspI ATTAAT 1 cut(s) 1062
XagI CCTNNNNNAGG 1 cut(s) 731
XapI RAATTY 4 cut(s) 131, 170, 350, 1013
XbaI TCTAGA 1 cut(s) 1066
XspI CTAG 4 cut(s) 60, 437, 705, 1067
Zsp2I ATGCAT 1 cut(s) 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.