Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007524

Physical Location & Seq

Genomic Coordinates Forward (+)

81944885 .. 81948319

Gene Structure 3435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG587800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGTGGCTTCACTTGCAGGACAAAATGATTAACAAACGATCTTTTGGTGATGAGGGTTCTTTTGAGGTTGCTTGTAAGCACCCTAGACATTTGGAACACTATAATGAGCCTGCTCCATATGTGGATGTTTTTCATTTTAGTGATGCTTCCCAGAAATTTCAAACTCCAGATGGCAAAGGTGACTGGAGTTGTAAATTTCAAGAGGAAGGAAGGTCTGCAGCTGCAAGGGACATGGCAACTGAAGTCACAAATGAGACCTACAAAGAACTTGAGATTGGTGCTTCCGGAAGCATGGCCAAATGTTTGTGGGTCAACAACAGTATTGTTGAAGCTAATGTAAGATCCGAGTCAGAAGCTCATCTATCATTGTTCCCAGAATTTTTTGGACCTGTAAACCAATTGAGGGATATACATCATTCTGACAAGATCTGTTCATCTCCTGTTGATTATTCTCCTCATTACCTAGTCTCTGTTGGACCTGAGCATCAAGCTTATGTTCCAGACTGCGGCCATGAGGGTTCACACACTTCAGATAATCCAGCTAACTTGGATTTTCAACATGAACGTCCTTTGGGTGTTGATGAGGAAAAGCTAATGGGTACCTGTGTCCTTTCTATGCCTGACCTTGAAGCATCTGCAAACTTTTGCTGTGAGGGAGCCAGAGACAACTGTATGTGTGCTGATTCAGGTTCTGTAAGATGTGTCAGACAGCACATCACAGACGGTAGAGAGAAATTAAGGGAAGACCTTGGGCAGGAGCTTTTTGAAGAGTTGGGCTTTTGTGATATGGGAGAGGAGGTTGCAGATAAATGGAGTGAAGAGGAAGAGCATCTGTTCCATGATGTTGTCCTCTCTAACCCTGCATCACTGGGTAAGAACTTCTGGCATAATCTCTCAGTGGCCTTTCCTTCACGAACGCATAAGGATTTTGTCAGCTATTATTTTAATGTGTTTATGCTCCGGAGGCGTGCTGAACAGAATAGATTTGATCCTCTAAACACTGATAGTGATGATGATGAGTTGCAAAAAAGTGAATTTGGACTGGTAGAGGATAATGAGGAGCCTGTGGTAGTATCTCCTATTAATCTAGATGCTTCTGCCTATAATGAGGAAGACCACTTACGGGGTGCCCAAGTATACATTGAAGATGCGGATGACATAGATGGTTATGACGATGCTGCCGTGGTCGGATGCAAAGGTATTAATGACAATGAGGGGGGTGATATAGATGATGGCTCAGGAGCCTCTCATGCTGGGAATTTCCCTGGTGATTGTGGCAGATCCACTGAATCTCGGCTTTTGTTTAAAACTTCTGAGACTGTTAGAGCGGATTATGATATTCAAGATGATTCTTGCACATCCTATGACTATCAGCAAGACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

461

Amino Acids

51.71

Weight (kDa)

4.47

Isoelectric Point (pI)

54.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47220 FvH4_6g47220 FvH4_6g47220
malus_domestica	MD00G1156000.v1.1 MD09G1062800.v1.1 MD17G1056700.v1.1
prunus_persica	Prupe.3G257400_v2.0.a1 Prupe.3G257400_v2.0.a1 Prupe.3G257400_v2.0.a1
pyrus_communis	pycom111g05320 pycom17g05680
rosa_chinensis	RchiOBHm_Chr2g0166271
rosa_laevigata	RLG00000021602
rosa_multiflora	Rmu_sc0016751.1_g000008 Rmu_sc0023080.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085030
rosa_rugosa	Rorug02G0521700 Rorug02G0521800
rosa_samantha	Rh2AG587800 Rh2BG599800 Rh2CG570100 Rh2CG570700 Rh2DG610000
rosa_wichuraiana	Rw0G003910 Rw2G048990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	599
AccB1I	GGYRCC	2 cut(s)	599, 1127
AccBSI	CCGCTC	1 cut(s)	1328
AccI	GTMKAC	1 cut(s)	1137
AccIII	TCCGGA	2 cut(s)	284, 960
AciI	CCGC	3 cut(s)	507, 1151, 1328
AclWI	GGATC	3 cut(s)	336, 983, 1275
AcoI	YGGCCR	2 cut(s)	294, 508
AcsI	RAATTY	5 cut(s)	155, 194, 377, 1034, 1258
AcuI	CTGAAG	2 cut(s)	261, 513
AfaI	GTAC	1 cut(s)	601
AfiI	CCNNNNNNNGG	4 cut(s)	403, 506, 754, 1123
AgsI	TTSAA	8 cut(s)	161, 200, 329, 557, 629, 767, 1145, 1343
AjnI	CCWGG	1 cut(s)	1264
AjuI	GAANNNNNNNTTGG	2 cut(s)	258, 290
AluBI	AGCT	8 cut(s)	221, 332, 356, 491, 542, 592, 760, 936
AluI	AGCT	8 cut(s)	221, 332, 356, 491, 542, 592, 760, 936
Alw26I	GTCTC	4 cut(s)	248, 472, 657, 1310
AlwI	GGATC	3 cut(s)	336, 983, 1275
AlwNI	CAGNNNCTG	1 cut(s)	692
Aor13HI	TCCGGA	2 cut(s)	284, 960
AoxI	GGCC	3 cut(s)	294, 508, 900
ApeKI	GCWGC	3 cut(s)	218, 221, 1178
ApoI	RAATTY	5 cut(s)	155, 194, 377, 1034, 1258
AseI	ATTAAT	2 cut(s)	1083, 1203
Asp718I	GGTACC	1 cut(s)	599
AspS9I	GGNCC	2 cut(s)	386, 476
AsuHPI	GGTGA	4 cut(s)	59, 191, 1232, 1280
AvaII	GGWCC	2 cut(s)	386, 476
BaeGI	GKGCMC	1 cut(s)	1132
BaeI	ACNNNNGTAYC	2 cut(s)	591, 624
BalI	TGGCCA	1 cut(s)	296
BanI	GGYRCC	2 cut(s)	599, 1127
BarI	GAAGNNNNNNTAC	2 cut(s)	1104, 1136
BbsI	GAAGAC	2 cut(s)	750, 1119
BbvI	GCAGC	3 cut(s)	208, 230, 1165
BccI	CCATC	3 cut(s)	164, 1157, 1226
BceAI	ACGGC	1 cut(s)	1166
BciT130I	CCWGG	1 cut(s)	1266
BcoDI	GTCTC	4 cut(s)	248, 472, 657, 1310
BfaI	CTAG	3 cut(s)	84, 464, 1088
BfmI	CTRYAG	1 cut(s)	216
BglII	AGATCT	1 cut(s)	426
BisI	GCNGC	4 cut(s)	219, 222, 508, 1179
BlsI	GCNGC	4 cut(s)	220, 223, 509, 1180
Bme1390I	CCNGG	1 cut(s)	1266
Bme18I	GGWCC	2 cut(s)	386, 476
BmgT120I	GGNCC	2 cut(s)	386, 476
BmiI	GGNNCC	5 cut(s)	601, 658, 1062, 1129, 1243
BmrFI	CCNGG	1 cut(s)	1266
BmrI	ACTGGG	1 cut(s)	878
BmsI	GCATC	9 cut(s)	133, 493, 641, 838, 872, 1081, 1138, 1165, 1181
BmuI	ACTGGG	1 cut(s)	878
BpiI	GAAGAC	2 cut(s)	750, 1119
BpmI	CTGGAG	2 cut(s)	150, 205
Bpu10I	CCTNAGC	2 cut(s)	480, 1237
BpuEI	CTTGAG	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	411
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	3 cut(s)	748, 1182, 1264
BsaWI	WCCGGW	2 cut(s)	284, 960
BsaXI	ACNNNNNCTCC	2 cut(s)	783, 813
Bsc4I	CCNNNNNNNGG	4 cut(s)	403, 506, 754, 1123
Bse1I	ACTGG	3 cut(s)	188, 873, 1047
Bse8I	GATNNNNATC	1 cut(s)	411
BseAI	TCCGGA	2 cut(s)	284, 960
BseBI	CCWGG	1 cut(s)	1266
BseDI	CCNNGG	3 cut(s)	748, 1182, 1264
BseGI	GGATG	4 cut(s)	130, 1159, 1196, 1358
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	4 cut(s)	403, 506, 754, 1123
BseMII	CTCAG	4 cut(s)	471, 909, 1251, 1305
BseNI	ACTGG	3 cut(s)	188, 873, 1047
BseRI	GAGGAG	3 cut(s)	444, 809, 1073
BseSI	GKGCMC	1 cut(s)	1132
BseXI	GCAGC	3 cut(s)	208, 230, 1165
BseYI	CCCAGC	1 cut(s)	1253
BshFI	GGCC	3 cut(s)	296, 510, 902
BshNI	GGYRCC	2 cut(s)	599, 1127
BsiSI	CCGG	2 cut(s)	285, 961
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	4 cut(s)	403, 506, 754, 1123
BsmAI	GTCTC	4 cut(s)	248, 472, 657, 1310
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	3 cut(s)	296, 510, 902
Bso31I	GGTCTC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	1132
Bsp13I	TCCGGA	2 cut(s)	284, 960
Bsp143I	GATC	5 cut(s)	38, 341, 426, 988, 1280
BspACI	CCGC	3 cut(s)	507, 1151, 1328
BspANI	GGCC	3 cut(s)	296, 510, 902
BspCNI	CTCAG	4 cut(s)	472, 908, 1250, 1306
BspEI	TCCGGA	2 cut(s)	284, 960
BspLI	GGNNCC	5 cut(s)	601, 658, 1062, 1129, 1243
BspMAI	CTGCAG	1 cut(s)	220
BspPI	GGATC	3 cut(s)	336, 983, 1275
BspQI	GCTCTTC	1 cut(s)	819
BspT107I	GGYRCC	2 cut(s)	599, 1127
BspTNI	GGTCTC	1 cut(s)	248
BsrBI	CCGCTC	1 cut(s)	1328
BsrI	ACTGG	3 cut(s)	188, 873, 1047
BssECI	CCNNGG	3 cut(s)	748, 1182, 1264
BssMI	GATC	5 cut(s)	38, 341, 426, 988, 1280
BssNAI	GTATAC	1 cut(s)	1138
BssT1I	CCWWGG	1 cut(s)	748
Bst1107I	GTATAC	1 cut(s)	1138
Bst2UI	CCWGG	1 cut(s)	1266
Bst4CI	ACNGT	5 cut(s)	320, 671, 725, 1321, 1382
Bst6I	CTCTTC	3 cut(s)	762, 813, 819
BstC8I	GCNNGC	2 cut(s)	111, 969
BstDEI	CTNAG	4 cut(s)	480, 895, 1237, 1314
BstDSI	CCRYGG	1 cut(s)	1182
BstENI	CCTNNNNNAGG	1 cut(s)	752
BstF5I	GGATG	4 cut(s)	130, 1159, 1196, 1358
BstKTI	GATC	5 cut(s)	41, 344, 429, 991, 1283
BstMAI	GTCTC	4 cut(s)	248, 472, 657, 1310
BstMBI	GATC	5 cut(s)	38, 341, 426, 988, 1280
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 964, 1250
BstNI	CCWGG	1 cut(s)	1266
BstSCI	CCNGG	1 cut(s)	1264
BstSFI	CTRYAG	1 cut(s)	216
BstSLI	GKGCMC	1 cut(s)	1132
BstV1I	GCAGC	3 cut(s)	208, 230, 1165
BstV2I	GAAGAC	2 cut(s)	750, 1119
BstX2I	RGATCY	3 cut(s)	341, 426, 1280
BstYI	RGATCY	3 cut(s)	341, 426, 1280
BstZ17I	GTATAC	1 cut(s)	1138
BsuRI	GGCC	3 cut(s)	296, 510, 902
BtgI	CCRYGG	1 cut(s)	1182
BtsCI	GGATG	4 cut(s)	130, 1159, 1196, 1358
BtsIMutI	CAGTG	4 cut(s)	866, 903, 999, 1284
Cac8I	GCNNGC	2 cut(s)	111, 969
CaiI	CAGNNNCTG	1 cut(s)	692
Cfr13I	GGNCC	2 cut(s)	386, 476
Csp6I	GTAC	1 cut(s)	600
CviAII	CATG	6 cut(s)	232, 292, 512, 560, 839, 1250
CviQI	GTAC	1 cut(s)	600
DdeI	CTNAG	4 cut(s)	480, 895, 1237, 1314
DpnI	GATC	5 cut(s)	40, 343, 428, 990, 1282
DpnII	GATC	5 cut(s)	38, 341, 426, 988, 1280
DraI	TTTAAA	1 cut(s)	1306
EaeI	YGGCCR	2 cut(s)	294, 508
Eam1104I	CTCTTC	3 cut(s)	762, 813, 819
EarI	CTCTTC	3 cut(s)	762, 813, 819
Eco130I	CCWWGG	1 cut(s)	748
Eco31I	GGTCTC	1 cut(s)	248
Eco47I	GGWCC	2 cut(s)	386, 476
Eco57I	CTGAAG	2 cut(s)	261, 513
EcoNI	CCTNNNNNAGG	1 cut(s)	752
EcoRII	CCWGG	1 cut(s)	1264
EcoT14I	CCWWGG	1 cut(s)	748
ErhI	CCWWGG	1 cut(s)	748
FaeI	CATG	6 cut(s)	235, 295, 515, 563, 842, 1253
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	6 cut(s)	231, 291, 511, 559, 838, 1249
FauNDI	CATATG	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	1137
Fnu4HI	GCNGC	4 cut(s)	219, 222, 508, 1179
FokI	GGATG	4 cut(s)	137, 1166, 1203, 1345
Fsp4HI	GCNGC	4 cut(s)	219, 222, 508, 1179
FspBI	CTAG	3 cut(s)	84, 464, 1088
GluI	GCNGC	4 cut(s)	219, 222, 508, 1179
GsaI	CCCAGC	1 cut(s)	1257
GsuI	CTGGAG	2 cut(s)	150, 205
HaeIII	GGCC	3 cut(s)	296, 510, 902
HapII	CCGG	2 cut(s)	285, 961
Hin1II	CATG	6 cut(s)	235, 295, 515, 563, 842, 1253
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	4 cut(s)	347, 683, 1289, 1349
HpaII	CCGG	2 cut(s)	285, 961
HphI	GGTGA	4 cut(s)	59, 191, 1232, 1280
Hpy166II	GTNNAC	4 cut(s)	313, 394, 521, 1138
Hpy188I	TCNGA	7 cut(s)	346, 352, 421, 532, 707, 1190, 1315
Hpy188III	TCNNGA	9 cut(s)	167, 200, 285, 500, 912, 961, 1088, 1239, 1343
Hpy8I	GTNNAC	4 cut(s)	313, 394, 521, 1138
HpyAV	CCTTC	3 cut(s)	200, 204, 918
HpyCH4III	ACNGT	5 cut(s)	320, 671, 725, 1321, 1382
HpyCH4IV	ACGT	1 cut(s)	565
HpyCH4V	TGCA	9 cut(s)	16, 218, 224, 638, 803, 863, 1024, 1194, 1356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 964, 1250
HpyF3I	CTNAG	4 cut(s)	480, 895, 1237, 1314
HpySE526I	ACGT	1 cut(s)	565
Hsp92II	CATG	6 cut(s)	235, 295, 515, 563, 842, 1253
Kpn2I	TCCGGA	2 cut(s)	284, 960
KpnI	GGTACC	1 cut(s)	603
Kzo9I	GATC	5 cut(s)	38, 341, 426, 988, 1280
LguI	GCTCTTC	1 cut(s)	819
LmnI	GCTCC	6 cut(s)	118, 656, 757, 963, 1060, 1241
Lsp1109I	GCAGC	3 cut(s)	208, 230, 1165
LweI	GCATC	9 cut(s)	133, 493, 641, 838, 872, 1081, 1138, 1165, 1181
MaeI	CTAG	3 cut(s)	84, 464, 1088
MaeII	ACGT	1 cut(s)	565
MaeIII	GTNAC	2 cut(s)	179, 244
MalI	GATC	5 cut(s)	40, 343, 428, 990, 1282
MbiI	CCGCTC	1 cut(s)	1328
MboI	GATC	5 cut(s)	38, 341, 426, 988, 1280
MboII	GAAGA	6 cut(s)	755, 779, 830, 836, 1124, 1157
MfeI	CAATTG	1 cut(s)	398
MflI	RGATCY	3 cut(s)	341, 426, 1280
MhlI	GDGCHC	1 cut(s)	1132
MlsI	TGGCCA	1 cut(s)	296
MluCI	AATT	7 cut(s)	155, 194, 377, 398, 734, 1034, 1258
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	2 cut(s)	454, 1168
Mox20I	TGGCCA	1 cut(s)	296
MroI	TCCGGA	2 cut(s)	284, 960
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	7 cut(s)	30, 737, 945, 1083, 1203, 1305, 1384
MslI	CAYNNNNRTG	2 cut(s)	102, 138
Msp20I	TGGCCA	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	2 cut(s)	285, 961
MspR9I	CCNGG	1 cut(s)	1266
MunI	CAATTG	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	1266
MwoI	GCNNNNNNNGC	3 cut(s)	13, 964, 1250
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	5 cut(s)	38, 341, 426, 988, 1280
NlaIII	CATG	6 cut(s)	235, 295, 515, 563, 842, 1253
NlaIV	GGNNCC	5 cut(s)	601, 658, 1062, 1129, 1243
NmeAIII	GCCGAG	1 cut(s)	1273
NmuCI	GTSAC	2 cut(s)	179, 244
PciSI	GCTCTTC	1 cut(s)	819
PcsI	WCGNNNNNNNCGW	1 cut(s)	1179
PfeI	GAWTC	3 cut(s)	683, 1289, 1349
PkrI	GCNGC	4 cut(s)	220, 223, 509, 1180
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
PshBI	ATTAAT	2 cut(s)	1083, 1203
Psp6I	CCWGG	1 cut(s)	1264
PspFI	CCCAGC	1 cut(s)	1253
PspGI	CCWGG	1 cut(s)	1264
PspN4I	GGNNCC	5 cut(s)	601, 658, 1062, 1129, 1243
PspPI	GGNCC	2 cut(s)	386, 476
PstI	CTGCAG	1 cut(s)	220
PstNI	CAGNNNCTG	1 cut(s)	692
PsuI	RGATCY	3 cut(s)	341, 426, 1280
PvuII	CAGCTG	1 cut(s)	221
RsaI	GTAC	1 cut(s)	601
RsaNI	GTAC	1 cut(s)	600
RseI	CAYNNNNRTG	2 cut(s)	102, 138
SapI	GCTCTTC	1 cut(s)	819
SaqAI	TTAA	7 cut(s)	30, 737, 945, 1083, 1203, 1305, 1384
SatI	GCNGC	4 cut(s)	219, 222, 508, 1179
Sau3AI	GATC	5 cut(s)	38, 341, 426, 988, 1280
Sau96I	GGNCC	2 cut(s)	386, 476
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	1 cut(s)	1266
SduI	GDGCHC	1 cut(s)	1132
SfaNI	GCATC	9 cut(s)	133, 493, 641, 838, 872, 1081, 1138, 1165, 1181
SfcI	CTRYAG	1 cut(s)	216
SinI	GGWCC	2 cut(s)	386, 476
SmiMI	CAYNNNNRTG	2 cut(s)	102, 138
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	7 cut(s)	155, 194, 377, 398, 734, 1034, 1258
SsiI	CCGC	3 cut(s)	507, 1151, 1328
SspMI	CTAG	3 cut(s)	84, 464, 1088
StyD4I	CCNGG	1 cut(s)	1264
StyI	CCWWGG	1 cut(s)	748
TaaI	ACNGT	5 cut(s)	320, 671, 725, 1321, 1382
TaiI	ACGT	1 cut(s)	568
TasI	AATT	7 cut(s)	155, 194, 377, 398, 734, 1034, 1258
TauI	GCSGC	1 cut(s)	510
TfiI	GAWTC	3 cut(s)	683, 1289, 1349
Tru1I	TTAA	7 cut(s)	30, 737, 945, 1083, 1203, 1305, 1384
Tru9I	TTAA	7 cut(s)	30, 737, 945, 1083, 1203, 1305, 1384
TscAI	CASTG	4 cut(s)	873, 903, 1006, 1291
TseFI	GTSAC	2 cut(s)	179, 244
TseI	GCWGC	3 cut(s)	218, 221, 1178
Tsp45I	GTSAC	2 cut(s)	179, 244
TspDTI	ATGAA	3 cut(s)	122, 423, 576
TspRI	CASTG	4 cut(s)	873, 903, 1006, 1291
VpaK11BI	GGWCC	2 cut(s)	386, 476
VspI	ATTAAT	2 cut(s)	1083, 1203
XagI	CCTNNNNNAGG	1 cut(s)	752
XapI	RAATTY	5 cut(s)	155, 194, 377, 1034, 1258
XbaI	TCTAGA	1 cut(s)	1087
XmiI	GTMKAC	1 cut(s)	1137
XspI	CTAG	3 cut(s)	84, 464, 1088

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.