Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007524

Physical Location & Seq

Genomic Coordinates Forward (+)

82069157 .. 82072640

Gene Structure 3484 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG599800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGTTAGTTTTAGTGCAAGTCTTATTTTGCATATTCAAAGCACCACTTCAAATGTGGCTTCACTTGCAGGACAAAATGATTAACAAACGATCTTTTGGTGATGAGGGTTCTTTTGAGGTTGCTTGTAAGCACCCTAGACATTTGGAACACTATAATGAGCCTGCTCCATATGTGGATGTTTTTCATTTTAGTGATGCTTCCCAGAAATTTCAAACTCCAGATGGCAAAGGTGACGGGAGTTGTAAATTTCAAGAGGAAGGAAGGTCTGCAGCTGCAAGGGACATGGCAACTGAAGTCACAAATGAGACCTACAAAGAACTTGAGACTGGTGCTTCCGGAAGCATGGCCAAATGTTTGTGGGTCAACAACAGTATTGTTGAAGCTAATGTAAGATCCGAGTCAGAAGCTCATCTTTCATTGTTCCCAGAATTTTTTGGACCTGTAAACCAATTGAGGGATATACATCATTCTGACAAGATCTGTTCATCTCCTGTTGATTATTCTCCTCATTACCTAGTCTCTGTTGGACCCGAGCATCAAGCTTATGTTCCAGACTGCGGCCATGAGGGTTCACACACTTCAGAACATGAACGGCCTTTGGGTGTTGATGAGGAAAAGCTAATGGGTACCTGTGTCCTTTCTATGCCTGACCTTGAAGCATCTGCAAACTTTTGCTGTGAGGGAGCCAGAGACAACTGTATGTGTGCTGATTCAGGTTCTGTAAGATGTGTCAGACAGCACATCACAGACGGTAGAAAGAAATTAAGGGAAGACCTTGGGCAGGAGCTTTTTGAAGAGTTGGGCTTTTGTGATATGGGAGAGGAGGTTGCAGATAAATGGAGTGAAGAGGAAGAGCATCTGTTCCATGATGTTGTCCTCTCTAACCCTGCATCACTGGGTAAGAACTTCTGGCATAATCTCTCAGTGGCCTTTCCTTCACGAACGCATAAGGATGTTGTCAGCTATTATTTTAATGTGTTTATGCTCCGGAGGCGTGCTGAGCAGAATAGGTTTGATCCTCTAAACACTGATAGTGATGATGATGAGTTGCAAAAAAGTGAATTTGGACTGGTAGAGGATAATGAGGAGCCTGTGGTAGTATCTCCTATTAATCTAGATGCTTCTGCCTATAATGAGGAAGACCACTTACGGGGTGCCCAAGTATACATTGAAGATGCGGATGACATAGATGGTTATGACGATGCTGCCGTGGTTGGATGCAAAGGTATTAATGACAATGAGGGGGGTGATATAGATGATGGCTCAGGAGCCTCTCATGCTGGGAATTTCCCTGGTGATTGTGGCAGATCCACTGAATCTCGGCTTTTGTTTAAAACTTCTGAGACTGTTACAGCAGATTATGATATTCAAGATGATTCTTGCACATCCTATGACTATCAGCAAGACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

470

Amino Acids

52.53

Weight (kDa)

4.53

Isoelectric Point (pI)

53.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47220 FvH4_6g47220 FvH4_6g47220
malus_domestica	MD00G1156000.v1.1 MD09G1062800.v1.1 MD17G1056700.v1.1
prunus_persica	Prupe.3G257400_v2.0.a1 Prupe.3G257400_v2.0.a1 Prupe.3G257400_v2.0.a1
pyrus_communis	pycom111g05320 pycom17g05680
rosa_chinensis	RchiOBHm_Chr2g0166271
rosa_laevigata	RLG00000021602
rosa_multiflora	Rmu_sc0016751.1_g000008 Rmu_sc0023080.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085030
rosa_rugosa	Rorug02G0521700 Rorug02G0521800
rosa_samantha	Rh2AG587800 Rh2BG599800 Rh2CG570100 Rh2CG570700 Rh2DG610000
rosa_wichuraiana	Rw0G003910 Rw2G048990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	626
AccB1I	GGYRCC	2 cut(s)	626, 1154
AccI	GTMKAC	1 cut(s)	1164
AccIII	TCCGGA	2 cut(s)	335, 987
AciI	CCGC	2 cut(s)	558, 1178
AclWI	GGATC	3 cut(s)	387, 1010, 1302
AcoI	YGGCCR	2 cut(s)	345, 559
AcsI	RAATTY	5 cut(s)	206, 245, 428, 1061, 1285
AcuI	CTGAAG	2 cut(s)	312, 564
AfaI	GTAC	1 cut(s)	628
AfiI	CCNNNNNNNGG	4 cut(s)	454, 557, 781, 1150
AgsI	TTSAA	9 cut(s)	37, 50, 212, 251, 380, 656, 794, 1172, 1370
AjnI	CCWGG	1 cut(s)	1291
AluBI	AGCT	7 cut(s)	272, 383, 407, 542, 619, 787, 963
AluI	AGCT	7 cut(s)	272, 383, 407, 542, 619, 787, 963
Alw26I	GTCTC	5 cut(s)	299, 317, 523, 684, 1337
AlwI	GGATC	3 cut(s)	387, 1010, 1302
AlwNI	CAGNNNCTG	1 cut(s)	719
Ama87I	CYCGRG	1 cut(s)	530
Aor13HI	TCCGGA	2 cut(s)	335, 987
AoxI	GGCC	4 cut(s)	345, 559, 593, 927
ApeKI	GCWGC	3 cut(s)	269, 272, 1205
ApoI	RAATTY	5 cut(s)	206, 245, 428, 1061, 1285
AseI	ATTAAT	2 cut(s)	1110, 1230
Asp718I	GGTACC	1 cut(s)	626
AspS9I	GGNCC	2 cut(s)	437, 527
AsuHPI	GGTGA	4 cut(s)	110, 242, 1259, 1307
AvaI	CYCGRG	1 cut(s)	530
AvaII	GGWCC	2 cut(s)	437, 527
BaeGI	GKGCMC	1 cut(s)	1159
BaeI	ACNNNNGTAYC	2 cut(s)	618, 651
BalI	TGGCCA	1 cut(s)	347
BanI	GGYRCC	2 cut(s)	626, 1154
BarI	GAAGNNNNNNTAC	2 cut(s)	1131, 1163
BbsI	GAAGAC	2 cut(s)	777, 1146
BbvI	GCAGC	3 cut(s)	259, 281, 1192
BccI	CCATC	3 cut(s)	215, 1184, 1253
BceAI	ACGGC	2 cut(s)	608, 1193
BciT130I	CCWGG	1 cut(s)	1293
BcoDI	GTCTC	5 cut(s)	299, 317, 523, 684, 1337
BfaI	CTAG	3 cut(s)	135, 515, 1115
BfmI	CTRYAG	1 cut(s)	267
BglII	AGATCT	1 cut(s)	477
BisI	GCNGC	4 cut(s)	270, 273, 559, 1206
BlpI	GCTNAGC	1 cut(s)	999
BlsI	GCNGC	4 cut(s)	271, 274, 560, 1207
Bme1390I	CCNGG	1 cut(s)	1293
Bme18I	GGWCC	2 cut(s)	437, 527
BmeT110I	CYCGRG	1 cut(s)	530
BmgT120I	GGNCC	2 cut(s)	437, 527
BmiI	GGNNCC	6 cut(s)	529, 628, 685, 1089, 1156, 1270
BmrFI	CCNGG	1 cut(s)	1293
BmrI	ACTGGG	1 cut(s)	905
BmsI	GCATC	9 cut(s)	184, 544, 668, 865, 899, 1108, 1165, 1192, 1208
BmuI	ACTGGG	1 cut(s)	905
BpiI	GAAGAC	2 cut(s)	777, 1146
BpmI	CTGGAG	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	1264
Bpu1102I	GCTNAGC	1 cut(s)	999
BpuEI	CTTGAG	1 cut(s)	341
BsaBI	GATNNNNATC	1 cut(s)	462
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	3 cut(s)	775, 1209, 1291
BsaWI	WCCGGW	2 cut(s)	335, 987
BsaXI	ACNNNNNCTCC	2 cut(s)	810, 840
Bsc4I	CCNNNNNNNGG	4 cut(s)	454, 557, 781, 1150
Bse1I	ACTGG	3 cut(s)	331, 900, 1074
Bse8I	GATNNNNATC	1 cut(s)	462
BseAI	TCCGGA	2 cut(s)	335, 987
BseBI	CCWGG	1 cut(s)	1293
BseDI	CCNNGG	3 cut(s)	775, 1209, 1291
BseGI	GGATG	5 cut(s)	181, 958, 1186, 1223, 1385
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	4 cut(s)	454, 557, 781, 1150
BseMII	CTCAG	4 cut(s)	936, 990, 1278, 1332
BseNI	ACTGG	3 cut(s)	331, 900, 1074
BseRI	GAGGAG	3 cut(s)	495, 836, 1100
BseSI	GKGCMC	1 cut(s)	1159
BseXI	GCAGC	3 cut(s)	259, 281, 1192
BseYI	CCCAGC	1 cut(s)	1280
BshFI	GGCC	4 cut(s)	347, 561, 595, 929
BshNI	GGYRCC	2 cut(s)	626, 1154
BsiHKCI	CYCGRG	1 cut(s)	530
BsiSI	CCGG	2 cut(s)	336, 988
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	4 cut(s)	454, 557, 781, 1150
BsmAI	GTCTC	5 cut(s)	299, 317, 523, 684, 1337
BsmFI	GGGAC	1 cut(s)	293
BsnI	GGCC	4 cut(s)	347, 561, 595, 929
Bso31I	GGTCTC	1 cut(s)	299
BsoBI	CYCGRG	1 cut(s)	530
Bsp1286I	GDGCHC	1 cut(s)	1159
Bsp13I	TCCGGA	2 cut(s)	335, 987
Bsp143I	GATC	5 cut(s)	89, 392, 477, 1015, 1307
Bsp1720I	GCTNAGC	1 cut(s)	999
BspACI	CCGC	2 cut(s)	558, 1178
BspANI	GGCC	4 cut(s)	347, 561, 595, 929
BspCNI	CTCAG	4 cut(s)	935, 991, 1277, 1333
BspEI	TCCGGA	2 cut(s)	335, 987
BspLI	GGNNCC	6 cut(s)	529, 628, 685, 1089, 1156, 1270
BspMAI	CTGCAG	1 cut(s)	271
BspPI	GGATC	3 cut(s)	387, 1010, 1302
BspQI	GCTCTTC	1 cut(s)	846
BspT107I	GGYRCC	2 cut(s)	626, 1154
BspTNI	GGTCTC	1 cut(s)	299
BsrI	ACTGG	3 cut(s)	331, 900, 1074
BssECI	CCNNGG	3 cut(s)	775, 1209, 1291
BssMI	GATC	5 cut(s)	89, 392, 477, 1015, 1307
BssNAI	GTATAC	1 cut(s)	1165
BssT1I	CCWWGG	1 cut(s)	775
Bst1107I	GTATAC	1 cut(s)	1165
Bst2UI	CCWGG	1 cut(s)	1293
Bst4CI	ACNGT	5 cut(s)	371, 698, 752, 1348, 1409
Bst6I	CTCTTC	3 cut(s)	789, 840, 846
BstC8I	GCNNGC	2 cut(s)	162, 996
BstDEI	CTNAG	4 cut(s)	922, 999, 1264, 1341
BstDSI	CCRYGG	1 cut(s)	1209
BstENI	CCTNNNNNAGG	1 cut(s)	779
BstF5I	GGATG	5 cut(s)	181, 958, 1186, 1223, 1385
BstKTI	GATC	5 cut(s)	92, 395, 480, 1018, 1310
BstMAI	GTCTC	5 cut(s)	299, 317, 523, 684, 1337
BstMBI	GATC	5 cut(s)	89, 392, 477, 1015, 1307
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 991, 1000, 1277
BstNI	CCWGG	1 cut(s)	1293
BstSCI	CCNGG	1 cut(s)	1291
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	1159
BstV1I	GCAGC	3 cut(s)	259, 281, 1192
BstV2I	GAAGAC	2 cut(s)	777, 1146
BstX2I	RGATCY	3 cut(s)	392, 477, 1307
BstYI	RGATCY	3 cut(s)	392, 477, 1307
BstZ17I	GTATAC	1 cut(s)	1165
BsuRI	GGCC	4 cut(s)	347, 561, 595, 929
BtgI	CCRYGG	1 cut(s)	1209
BtsCI	GGATG	5 cut(s)	181, 958, 1186, 1223, 1385
BtsIMutI	CAGTG	4 cut(s)	893, 930, 1026, 1311
Cac8I	GCNNGC	2 cut(s)	162, 996
CaiI	CAGNNNCTG	1 cut(s)	719
Cfr13I	GGNCC	2 cut(s)	437, 527
Csp6I	GTAC	1 cut(s)	627
CviAII	CATG	6 cut(s)	283, 343, 563, 587, 866, 1277
CviQI	GTAC	1 cut(s)	627
DdeI	CTNAG	4 cut(s)	922, 999, 1264, 1341
DpnI	GATC	5 cut(s)	91, 394, 479, 1017, 1309
DpnII	GATC	5 cut(s)	89, 392, 477, 1015, 1307
DraI	TTTAAA	1 cut(s)	1333
EaeI	YGGCCR	2 cut(s)	345, 559
Eam1104I	CTCTTC	3 cut(s)	789, 840, 846
EarI	CTCTTC	3 cut(s)	789, 840, 846
Eco130I	CCWWGG	1 cut(s)	775
Eco31I	GGTCTC	1 cut(s)	299
Eco47I	GGWCC	2 cut(s)	437, 527
Eco57I	CTGAAG	2 cut(s)	312, 564
Eco88I	CYCGRG	1 cut(s)	530
EcoNI	CCTNNNNNAGG	1 cut(s)	779
EcoRII	CCWGG	1 cut(s)	1291
EcoT14I	CCWWGG	1 cut(s)	775
ErhI	CCWWGG	1 cut(s)	775
FaeI	CATG	6 cut(s)	286, 346, 566, 590, 869, 1280
FalI	AAGNNNNNCTT	4 cut(s)	30, 62, 396, 428
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	6 cut(s)	282, 342, 562, 586, 865, 1276
FauNDI	CATATG	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	1164
Fnu4HI	GCNGC	4 cut(s)	270, 273, 559, 1206
FokI	GGATG	5 cut(s)	188, 965, 1193, 1230, 1372
Fsp4HI	GCNGC	4 cut(s)	270, 273, 559, 1206
FspBI	CTAG	3 cut(s)	135, 515, 1115
GluI	GCNGC	4 cut(s)	270, 273, 559, 1206
GsaI	CCCAGC	1 cut(s)	1284
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	4 cut(s)	347, 561, 595, 929
HapII	CCGG	2 cut(s)	336, 988
Hin1II	CATG	6 cut(s)	286, 346, 566, 590, 869, 1280
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	1 cut(s)	540
HinfI	GANTC	4 cut(s)	398, 710, 1316, 1376
HpaII	CCGG	2 cut(s)	336, 988
HphI	GGTGA	4 cut(s)	110, 242, 1259, 1307
Hpy166II	GTNNAC	4 cut(s)	364, 445, 572, 1165
Hpy188I	TCNGA	6 cut(s)	397, 403, 472, 583, 734, 1342
Hpy188III	TCNNGA	9 cut(s)	218, 251, 336, 551, 939, 988, 1115, 1266, 1370
Hpy8I	GTNNAC	4 cut(s)	364, 445, 572, 1165
HpyAV	CCTTC	3 cut(s)	251, 255, 945
HpyCH4III	ACNGT	5 cut(s)	371, 698, 752, 1348, 1409
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 991, 1000, 1277
HpyF3I	CTNAG	4 cut(s)	922, 999, 1264, 1341
Hsp92II	CATG	6 cut(s)	286, 346, 566, 590, 869, 1280
Kpn2I	TCCGGA	2 cut(s)	335, 987
KpnI	GGTACC	1 cut(s)	630
Kzo9I	GATC	5 cut(s)	89, 392, 477, 1015, 1307
LguI	GCTCTTC	1 cut(s)	846
LmnI	GCTCC	6 cut(s)	169, 683, 784, 990, 1087, 1268
Lsp1109I	GCAGC	3 cut(s)	259, 281, 1192
LweI	GCATC	9 cut(s)	184, 544, 668, 865, 899, 1108, 1165, 1192, 1208
MaeI	CTAG	3 cut(s)	135, 515, 1115
MaeIII	GTNAC	3 cut(s)	230, 295, 1348
MalI	GATC	5 cut(s)	91, 394, 479, 1017, 1309
MboI	GATC	5 cut(s)	89, 392, 477, 1015, 1307
MboII	GAAGA	6 cut(s)	782, 806, 857, 863, 1151, 1184
MfeI	CAATTG	1 cut(s)	449
MflI	RGATCY	3 cut(s)	392, 477, 1307
MhlI	GDGCHC	1 cut(s)	1159
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	7 cut(s)	206, 245, 428, 449, 761, 1061, 1285
MluNI	TGGCCA	1 cut(s)	347
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	2 cut(s)	505, 1195
Mox20I	TGGCCA	1 cut(s)	347
MroI	TCCGGA	2 cut(s)	335, 987
MscI	TGGCCA	1 cut(s)	347
MseI	TTAA	7 cut(s)	81, 764, 972, 1110, 1230, 1332, 1411
MslI	CAYNNNNRTG	3 cut(s)	153, 189, 951
Msp20I	TGGCCA	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	2 cut(s)	336, 988
MspR9I	CCNGG	1 cut(s)	1293
MunI	CAATTG	1 cut(s)	449
MvaI	CCWGG	1 cut(s)	1293
MwoI	GCNNNNNNNGC	4 cut(s)	64, 991, 1000, 1277
NdeI	CATATG	1 cut(s)	169
NdeII	GATC	5 cut(s)	89, 392, 477, 1015, 1307
NlaIII	CATG	6 cut(s)	286, 346, 566, 590, 869, 1280
NlaIV	GGNNCC	6 cut(s)	529, 628, 685, 1089, 1156, 1270
NmeAIII	GCCGAG	1 cut(s)	1300
NmuCI	GTSAC	2 cut(s)	230, 295
PciSI	GCTCTTC	1 cut(s)	846
PcsI	WCGNNNNNNNCGW	1 cut(s)	1206
PfeI	GAWTC	3 cut(s)	710, 1316, 1376
PkrI	GCNGC	4 cut(s)	271, 274, 560, 1207
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PshBI	ATTAAT	2 cut(s)	1110, 1230
Psp6I	CCWGG	1 cut(s)	1291
PspFI	CCCAGC	1 cut(s)	1280
PspGI	CCWGG	1 cut(s)	1291
PspN4I	GGNNCC	6 cut(s)	529, 628, 685, 1089, 1156, 1270
PspPI	GGNCC	2 cut(s)	437, 527
PstI	CTGCAG	1 cut(s)	271
PstNI	CAGNNNCTG	1 cut(s)	719
PsuI	RGATCY	3 cut(s)	392, 477, 1307
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	1 cut(s)	628
RsaNI	GTAC	1 cut(s)	627
RseI	CAYNNNNRTG	3 cut(s)	153, 189, 951
SapI	GCTCTTC	1 cut(s)	846
SaqAI	TTAA	7 cut(s)	81, 764, 972, 1110, 1230, 1332, 1411
SatI	GCNGC	4 cut(s)	270, 273, 559, 1206
Sau3AI	GATC	5 cut(s)	89, 392, 477, 1015, 1307
Sau96I	GGNCC	2 cut(s)	437, 527
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	1 cut(s)	1293
SduI	GDGCHC	1 cut(s)	1159
SfaNI	GCATC	9 cut(s)	184, 544, 668, 865, 899, 1108, 1165, 1192, 1208
SfcI	CTRYAG	1 cut(s)	267
SinI	GGWCC	2 cut(s)	437, 527
SmiMI	CAYNNNNRTG	3 cut(s)	153, 189, 951
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	7 cut(s)	206, 245, 428, 449, 761, 1061, 1285
SsiI	CCGC	2 cut(s)	558, 1178
SspMI	CTAG	3 cut(s)	135, 515, 1115
StyD4I	CCNGG	1 cut(s)	1291
StyI	CCWWGG	1 cut(s)	775
TaaI	ACNGT	5 cut(s)	371, 698, 752, 1348, 1409
TasI	AATT	7 cut(s)	206, 245, 428, 449, 761, 1061, 1285
TauI	GCSGC	1 cut(s)	561
TfiI	GAWTC	3 cut(s)	710, 1316, 1376
Tru1I	TTAA	7 cut(s)	81, 764, 972, 1110, 1230, 1332, 1411
Tru9I	TTAA	7 cut(s)	81, 764, 972, 1110, 1230, 1332, 1411
TscAI	CASTG	4 cut(s)	900, 930, 1033, 1318
TseFI	GTSAC	2 cut(s)	230, 295
TseI	GCWGC	3 cut(s)	269, 272, 1205
Tsp45I	GTSAC	2 cut(s)	230, 295
TspDTI	ATGAA	4 cut(s)	173, 405, 474, 603
TspRI	CASTG	4 cut(s)	900, 930, 1033, 1318
VpaK11BI	GGWCC	2 cut(s)	437, 527
VspI	ATTAAT	2 cut(s)	1110, 1230
XagI	CCTNNNNNAGG	1 cut(s)	779
XapI	RAATTY	5 cut(s)	206, 245, 428, 1061, 1285
XbaI	TCTAGA	1 cut(s)	1114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	51
XmiI	GTMKAC	1 cut(s)	1164
XspI	CTAG	3 cut(s)	135, 515, 1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.