Rorug02G0521700
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007524
Physical Location & Seq
Reverse (-)
65311855 .. 65312322
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0521700.1

Sequence Viewer

Length: 468 bp
ATGGCCAGTACTCATGAGTTCAAAGAAACCCAAATGTCCCTGTACTTCCAGGACTTCACCACCGGGTCAAATCTCACGACATTACCAATTGCAGGAATTGCCGGCAAGTTTTGGACCTTTGATCAATTTGGAACAGTTTACGTCACCGACGACCCCTTAACAGAAGGCCCAAGCCCTAAATCGACACTAGTTGGCCGAGGACAGGCTTTTATTGTAACATCAGCACTAGATGGACGTAACGCCCTAGTTTTTCTCTCGATTGTGTTCACAAACAAGAAGTACAATGGTAGCACTATTGAGATACAAGGAAACAGTAAGCAATTTGAGCCGGTAAGAGAGGTGGCGGTGGTTTCAGGTACTGGTAAATTTCGGTTTGCTAGGGGATATGCTACGCTCGAAACTTATTTCGTGGACCAACCAAGGGGCTACTCTGTTATACGCTGCAATATTACAGTGCAACACTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

155

Amino Acids

17.21

Weight (kDa)

7.83

Isoelectric Point (pI)

24.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dirigent PF03018 10 - 152 2.2e-45 Dirigent-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 344
AcoI YGGCCR 2 cut(s) 3, 193
AcsI RAATTY 1 cut(s) 365
AfaI GTAC 4 cut(s) 10, 44, 281, 358
AfiI CCNNNNNNNGG 3 cut(s) 92, 202, 421
AgsI TTSAA 1 cut(s) 22
AhlI ACTAGT 1 cut(s) 187
AjnI CCWGG 1 cut(s) 48
AlwNI CAGNNNCTG 1 cut(s) 359
AoxI GGCC 3 cut(s) 3, 166, 193
ApeKI GCWGC 1 cut(s) 441
ApoI RAATTY 1 cut(s) 365
AspS9I GGNCC 3 cut(s) 114, 167, 412
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 2 cut(s) 49, 136
AvaII GGWCC 2 cut(s) 114, 412
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 428
BccI CCATC 1 cut(s) 224
BciT130I CCWGG 1 cut(s) 50
BclI TGATCA 1 cut(s) 121
BcnI CCSGG 1 cut(s) 64
BcuI ACTAGT 1 cut(s) 187
BfaI CTAG 4 cut(s) 188, 227, 245, 378
BisI GCNGC 1 cut(s) 442
BlsI GCNGC 1 cut(s) 443
BmcAI AGTACT 1 cut(s) 10
Bme1390I CCNGG 2 cut(s) 50, 64
Bme18I GGWCC 2 cut(s) 114, 412
BmgT120I GGNCC 3 cut(s) 114, 167, 412
BmrFI CCNGG 2 cut(s) 50, 64
BpuMI CCSGG 1 cut(s) 64
BsaJI CCNNGG 2 cut(s) 196, 419
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 202, 421
Bse118I RCCGGY 2 cut(s) 101, 328
Bse1I ACTGG 2 cut(s) 6, 364
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 2 cut(s) 196, 419
BseLI CCNNNNNNNGG 3 cut(s) 92, 202, 421
BseNI ACTGG 2 cut(s) 6, 364
BseXI GCAGC 1 cut(s) 428
BshFI GGCC 3 cut(s) 5, 168, 195
BsiSI CCGG 3 cut(s) 63, 102, 329
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 3 cut(s) 92, 202, 421
BsmFI GGGAC 1 cut(s) 22
BsnI GGCC 3 cut(s) 5, 168, 195
Bsp143I GATC 1 cut(s) 121
BspACI CCGC 1 cut(s) 344
BspANI GGCC 3 cut(s) 5, 168, 195
BspHI TCATGA 1 cut(s) 13
BsrFI RCCGGY 2 cut(s) 101, 328
BsrI ACTGG 2 cut(s) 6, 364
BssAI RCCGGY 2 cut(s) 101, 328
BssECI CCNNGG 2 cut(s) 196, 419
BssMI GATC 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 419
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 3 cut(s) 136, 314, 454
BstAPI GCANNNNNTGC 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 103
BstKTI GATC 1 cut(s) 124
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 2 cut(s) 98, 325
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 2 cut(s) 48, 62
BstV1I GCAGC 1 cut(s) 428
BsuRI GGCC 3 cut(s) 5, 168, 195
BtsIMutI CAGTG 1 cut(s) 459
Cac8I GCNNGC 1 cut(s) 103
CaiI CAGNNNCTG 1 cut(s) 359
CciI TCATGA 1 cut(s) 13
Cfr10I RCCGGY 2 cut(s) 101, 328
Cfr13I GGNCC 3 cut(s) 114, 167, 412
Csp6I GTAC 4 cut(s) 9, 43, 280, 357
CviAII CATG 1 cut(s) 14
CviJI RGCY 7 cut(s) 5, 168, 174, 195, 206, 328, 426
CviKI_1 RGCY 7 cut(s) 5, 168, 174, 195, 206, 328, 426
CviQI GTAC 4 cut(s) 9, 43, 280, 357
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
EaeI YGGCCR 2 cut(s) 3, 193
Eco130I CCWWGG 1 cut(s) 419
Eco47I GGWCC 2 cut(s) 114, 412
EcoRII CCWGG 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 419
ErhI CCWWGG 1 cut(s) 419
FaeI CATG 1 cut(s) 17
FaiI YATR 3 cut(s) 15, 387, 437
FaqI GGGAC 1 cut(s) 22
FatI CATG 1 cut(s) 13
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 1 cut(s) 442
Fsp4HI GCNGC 1 cut(s) 442
FspBI CTAG 4 cut(s) 188, 227, 245, 378
GluI GCNGC 1 cut(s) 442
HaeIII GGCC 3 cut(s) 5, 168, 195
HapII CCGG 3 cut(s) 63, 102, 329
Hin1II CATG 1 cut(s) 17
HpaII CCGG 3 cut(s) 63, 102, 329
HphI GGTGA 2 cut(s) 49, 136
Hpy166II GTNNAC 3 cut(s) 139, 267, 412
Hpy188III TCNNGA 3 cut(s) 14, 76, 256
Hpy8I GTNNAC 3 cut(s) 139, 267, 412
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 3 cut(s) 136, 314, 454
HpyCH4IV ACGT 2 cut(s) 141, 235
HpyCH4V TGCA 3 cut(s) 92, 444, 457
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 325
HpySE526I ACGT 2 cut(s) 141, 235
Hsp92II CATG 1 cut(s) 17
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 1 cut(s) 121
Lsp1109I GCAGC 1 cut(s) 428
MaeI CTAG 4 cut(s) 188, 227, 245, 378
MaeII ACGT 2 cut(s) 141, 235
MaeIII GTNAC 3 cut(s) 142, 214, 236
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MfeI CAATTG 1 cut(s) 87
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 87, 96, 125, 320, 365
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 2 cut(s) 191, 331
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 101
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 158
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 63, 102, 329
MspR9I CCNGG 2 cut(s) 50, 64
MunI CAATTG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 98, 325
NaeI GCCGGC 1 cut(s) 103
NciI CCSGG 1 cut(s) 64
NdeII GATC 1 cut(s) 121
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 1 cut(s) 17
NmeAIII GCCGAG 1 cut(s) 221
NmuCI GTSAC 1 cut(s) 142
PagI TCATGA 1 cut(s) 13
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PdiI GCCGGC 1 cut(s) 103
PfoI TCCNGGA 1 cut(s) 48
PkrI GCNGC 1 cut(s) 443
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspPI GGNCC 3 cut(s) 114, 167, 412
PstNI CAGNNNCTG 1 cut(s) 359
RsaI GTAC 4 cut(s) 10, 44, 281, 358
RsaNI GTAC 4 cut(s) 9, 43, 280, 357
SaqAI TTAA 1 cut(s) 158
SatI GCNGC 1 cut(s) 442
Sau3AI GATC 1 cut(s) 121
Sau96I GGNCC 3 cut(s) 114, 167, 412
ScaI AGTACT 1 cut(s) 10
ScrFI CCNGG 2 cut(s) 50, 64
SetI ASST 5 cut(s) 119, 144, 238, 342, 358
SinI GGWCC 2 cut(s) 114, 412
SpeI ACTAGT 1 cut(s) 187
Sse9I AATT 5 cut(s) 87, 96, 125, 320, 365
SsiI CCGC 1 cut(s) 344
SspI AATATT 1 cut(s) 448
SspMI CTAG 4 cut(s) 188, 227, 245, 378
StyD4I CCNGG 2 cut(s) 48, 62
StyI CCWWGG 1 cut(s) 419
TaaI ACNGT 3 cut(s) 136, 314, 454
TaiI ACGT 2 cut(s) 144, 238
TaqI TCGA 3 cut(s) 182, 257, 396
TasI AATT 5 cut(s) 87, 96, 125, 320, 365
TatI WGTACW 3 cut(s) 8, 42, 279
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
TscAI CASTG 1 cut(s) 459
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 1 cut(s) 441
Tsp45I GTSAC 1 cut(s) 142
TspRI CASTG 1 cut(s) 459
VpaK11BI GGWCC 2 cut(s) 114, 412
XapI RAATTY 1 cut(s) 365
XspI CTAG 4 cut(s) 188, 227, 245, 378
ZrmI AGTACT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.