Rh2CG570100
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0007524
Physical Location & Seq
Forward (+)
75015606 .. 75016245
640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG570100.1

Sequence Viewer

Length: 375 bp
ATGTTAGTTTTAGTGCAAGTCTTATTTTGCATATTCAAAGCACCACTTCAAATGTGGCTTCACTTGCAGGACAAAATGATTAACAAACGATCTTTTGGTGATGAGGGTTCTTTTGAGGTTGCTTGTAAGCACCCTAGACATTTGGAACACTATAATGAGCCTGCTCCATATGTGGATGTTTTTCATTTTAGTGATGCTTCCCAGAAATTTCAAACTCCAGATGGCAAAGGTGACGGGAGTTGTAAATTTCAAGAGGAAGGAAGGTCTGCAGCTGCAAGGGACATGGCAACTGAAGTCACAAATGAGACCTACAAAGAACTTGAGACTGGTGCTTCCGGAAGCATGGCCAAATGTTTGTGGGGCAACACCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

124

Amino Acids

13.95

Weight (kDa)

5.68

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 335
AcoI YGGCCR 1 cut(s) 345
AcsI RAATTY 2 cut(s) 206, 245
AcuI CTGAAG 1 cut(s) 312
AgsI TTSAA 4 cut(s) 37, 50, 212, 251
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
Alw26I GTCTC 2 cut(s) 299, 317
Aor13HI TCCGGA 1 cut(s) 335
AoxI GGCC 1 cut(s) 345
ApeKI GCWGC 2 cut(s) 269, 272
ApoI RAATTY 2 cut(s) 206, 245
AsuHPI GGTGA 2 cut(s) 110, 242
BalI TGGCCA 1 cut(s) 347
BbvI GCAGC 2 cut(s) 259, 281
BccI CCATC 1 cut(s) 215
BcoDI GTCTC 2 cut(s) 299, 317
BfaI CTAG 1 cut(s) 135
BfmI CTRYAG 1 cut(s) 267
BisI GCNGC 2 cut(s) 270, 273
BlsI GCNGC 2 cut(s) 271, 274
BmsI GCATC 1 cut(s) 184
BpmI CTGGAG 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 341
BsaI GGTCTC 1 cut(s) 299
BsaWI WCCGGW 1 cut(s) 335
Bse1I ACTGG 1 cut(s) 331
BseAI TCCGGA 1 cut(s) 335
BseGI GGATG 1 cut(s) 181
BseNI ACTGG 1 cut(s) 331
BseXI GCAGC 2 cut(s) 259, 281
BshFI GGCC 1 cut(s) 347
BsiSI CCGG 1 cut(s) 336
BslFI GGGAC 1 cut(s) 293
BsmAI GTCTC 2 cut(s) 299, 317
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 1 cut(s) 347
Bso31I GGTCTC 1 cut(s) 299
Bsp13I TCCGGA 1 cut(s) 335
Bsp143I GATC 1 cut(s) 89
BspANI GGCC 1 cut(s) 347
BspEI TCCGGA 1 cut(s) 335
BspMAI CTGCAG 1 cut(s) 271
BspTNI GGTCTC 1 cut(s) 299
BsrI ACTGG 1 cut(s) 331
BssMI GATC 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 162
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 1 cut(s) 92
BstMAI GTCTC 2 cut(s) 299, 317
BstMBI GATC 1 cut(s) 89
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstSFI CTRYAG 1 cut(s) 267
BstV1I GCAGC 2 cut(s) 259, 281
BsuRI GGCC 1 cut(s) 347
BtsCI GGATG 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 162
CviAII CATG 2 cut(s) 283, 343
CviJI RGCY 4 cut(s) 58, 160, 272, 347
CviKI_1 RGCY 4 cut(s) 58, 160, 272, 347
DpnI GATC 1 cut(s) 91
DpnII GATC 1 cut(s) 89
EaeI YGGCCR 1 cut(s) 345
Eco31I GGTCTC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 312
FaeI CATG 2 cut(s) 286, 346
FaiI YATR 7 cut(s) 32, 153, 169, 171, 284, 344, 373
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FaqI GGGAC 1 cut(s) 293
FatI CATG 2 cut(s) 282, 342
FauNDI CATATG 1 cut(s) 169
Fnu4HI GCNGC 2 cut(s) 270, 273
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 2 cut(s) 270, 273
FspBI CTAG 1 cut(s) 135
GluI GCNGC 2 cut(s) 270, 273
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 1 cut(s) 347
HapII CCGG 1 cut(s) 336
Hin1II CATG 2 cut(s) 286, 346
HpaII CCGG 1 cut(s) 336
HphI GGTGA 2 cut(s) 110, 242
Hpy188III TCNNGA 3 cut(s) 218, 251, 336
HpyAV CCTTC 2 cut(s) 251, 255
HpyCH4V TGCA 5 cut(s) 16, 30, 67, 269, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
Hsp92II CATG 2 cut(s) 286, 346
Kpn2I TCCGGA 1 cut(s) 335
Kzo9I GATC 1 cut(s) 89
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 6 cut(s) 53, 174, 215, 231, 312, 349
Lsp1109I GCAGC 2 cut(s) 259, 281
LweI GCATC 1 cut(s) 184
MaeI CTAG 1 cut(s) 135
MaeIII GTNAC 2 cut(s) 230, 295
MalI GATC 1 cut(s) 91
MboI GATC 1 cut(s) 89
MlsI TGGCCA 1 cut(s) 347
MluCI AATT 2 cut(s) 206, 245
MluNI TGGCCA 1 cut(s) 347
MnlI CCTC 3 cut(s) 97, 109, 247
Mox20I TGGCCA 1 cut(s) 347
MroI TCCGGA 1 cut(s) 335
MscI TGGCCA 1 cut(s) 347
MseI TTAA 1 cut(s) 81
MslI CAYNNNNRTG 2 cut(s) 153, 189
Msp20I TGGCCA 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 272
MspI CCGG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 64
NdeI CATATG 1 cut(s) 169
NdeII GATC 1 cut(s) 89
NlaIII CATG 2 cut(s) 286, 346
NmuCI GTSAC 2 cut(s) 230, 295
PkrI GCNGC 2 cut(s) 271, 274
PstI CTGCAG 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 272
RseI CAYNNNNRTG 2 cut(s) 153, 189
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 2 cut(s) 270, 273
Sau3AI GATC 1 cut(s) 89
SetI ASST 6 cut(s) 120, 232, 266, 274, 311, 371
SfaNI GCATC 1 cut(s) 184
SfcI CTRYAG 1 cut(s) 267
SmiMI CAYNNNNRTG 2 cut(s) 153, 189
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 2 cut(s) 206, 245
SspMI CTAG 1 cut(s) 135
TasI AATT 2 cut(s) 206, 245
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseFI GTSAC 2 cut(s) 230, 295
TseI GCWGC 2 cut(s) 269, 272
Tsp45I GTSAC 2 cut(s) 230, 295
TspDTI ATGAA 1 cut(s) 173
XapI RAATTY 2 cut(s) 206, 245
XcmI CCANNNNNNNNNTGG 1 cut(s) 51
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.