FvH4_6g47520

cyclic nucleotide-gated ion channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003871
Physical Location & Seq
Forward (+)
35981531 .. 35985757
4227 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47520.t1

Sequence Viewer

Length: 2130 bp
ATGTCCTCCAACTTCTCCCTCCCAAGGTGGACGGTATTCCACCGGCAACAGAGCTCCGGCCCTAGCGACAGCGACAACAGCAACAACGTTGTGGAAGACAACCCGATCTCAATCTCCACCTCGGTGGTCGAGTGCTACGCTTGCACTCAGGTCGGAGTTCCGGTCTTCCACTCGACCAGCTGCGACGGCGCCCACCAGCCTCAATGGGAGGCCTCGGCGGGGTCTTCCTTAGTCCCTATCCAATCCCGCAGCGACCTCAAGAAGGGCCTCCGCCGCAACCGCCTCCCCGTGGGGCCCTTCGGCGAGGTCCTCGACCCGCGCACCAAGCGCGTGCAGAGATGGAACCGCGCCTTCCTCCTCGCGCGTGGGATGGCCCTCGCCATCGACCCCCTCTTCTTCTACGCCCTCTCCATCGGCCGCGGTGGGACCCCCTGCCTCTACATGGACGGCGGCCTCGCGGCGATCGTCACGGTGCTCCGCACGTGCGTCGACGCCGTGCATCTCTGCCACCTGTGGCTGCAGTTCCGGCTGGCTTATGTCTCTAGGGAGTCGCTGGTGGTCGGCTGCGGGAAGCTCGTGTGGGACGCACGAGCGATCGCGTCGCATTATGTTCGGTCCTTGAAGGGCTTCTGGTTCGACGCCTTCGTTATTCTTCCGGTTCCTCAGGCTGTGTTCTGGCTTGTTCTTCCAAAATTGATAAGGGAAGAAAAGATTAAAGTGATAATGACAATTCTTCTAGTAATATTCTTATTCCAATTCCTCCCAAAAGTCTACCATAGCATCTGCTTGATGAGAAGAATGGCAAAGGTTACAGGATACATTTTCGGCACCATTTGGTGGGGTTTTGGCCTCAACCTCATCGCCTACTTCATTGCCTCACATGTTGCTGGGGGATGCTGGTATGTGCTTGCGATACAGCGAGTGGCGTCCTGCCTAAAGCAGCAGTGTGAATTGGGTGGGAATTGCAATCTCTCTTTGTCATGCTCACAGGAAGTTTGTTACCAGTCTCTGATACCGGATTCCATGGAAGCAGCTCCATGTGGTGGCAACGTGACAAATGGGTTGAGAAAGCCTTCCTGCTTGGATGTTAATGGAACATTCAACTACGGCATCTATCAGTGGGCTCTTCCTGTCATATCTAGCAACTCGCTGGCTATTAAGATCCTGTATCCCATCTTTTGGGGCTTAATGACTCTCAGCACCTTTGGCAATGATCTTGAACCAACAAGTCACTGGCTAGAAGTGATTTTCAGTATATGCATTGTGCTCAGTGGGTTATTGCTCTTCACTTTGCTCATTGGGAACATTCAAGTGTTTCTGCACGCGGTAATGGCAAAGAAGAGGAAAATGCAGCTGAGGTGTAGAGACATGGAATGGTGGATGAGAAGAAGGCAGTTGCCATCTGGTTTGCGACGAAGAGTTAGACATTATGAACGCCATAGATGGGTGACAATGGGGGGAGAAGATGAGATGGATTTGATCAAAGACTTGCCTGAAGGTCTTCGAAGAGAAATTAAACGCCACTTATGCATAGACCTCATAAAGAAGGTACCTCTGTTCCACAACTTGGATGAACTTATTCTTGACAACATTTGCGACCGTGTTAGGCCTCTAGTCTTCTCTAAAGACGAGAAGATAATTAGAGAAGGAGATCCTGTGCCAAAGATGCTATTCATTGTGCGTGGACGCATAAAGCGAAGCCAAGGCCTAAGCAAAGGCATGGTGGGAACCAATGTGCTTGAACCGGGTGGGTTTCTAGGCGATGAGCTGCTCTCATGGTGCCTACGACGGCCCTTCATAGACCGCCTTCCAGCCTCATCTGCTACATTTGCTTGCCTTGAATCAACAGAAGCATTTGGCCTCAATGCAAGTGACCTCAGATACATTACAGACCACTTCCGGTACAAATTTGCAAACGAGAGGCTCAAGAGGACTGCAAGATACTACTCTTCCAATTGGAGAACATGGGCTGCTGTAAATATACAATTCGCTTGGCGCCGCTACAGGCTGAGGACTAGAGGTCCTGTGATTCCTGTAGTGACCACCGAACAAAATGGAGGCGCTGATCGTAGGCTCTTGCAGTATGCTGCATTGTTCATGTCACTTAAGCCGCATGATCATCTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

710

Amino Acids

80.74

Weight (kDa)

9.49

Isoelectric Point (pI)

54.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 154 - 437 1.8e-06 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1549
AccB1I GGYRCC 5 cut(s) 188, 827, 1549, 1779, 1995
AccB7I CCANNNNNTGG 4 cut(s) 837, 1043, 1179, 1567
AccI GTMKAC 2 cut(s) 489, 771
AccII CGCG 9 cut(s) 319, 330, 348, 362, 364, 420, 458, 599, 1325
AclI AACGTT 1 cut(s) 87
AclWI GGATC 2 cut(s) 1156, 1646
AcoI YGGCCR 1 cut(s) 415
AcsI RAATTY 1 cut(s) 1907
AcuI CTGAAG 1 cut(s) 1515
AcvI CACGTG 1 cut(s) 483
AcyI GRCGYC 5 cut(s) 189, 492, 639, 926, 1996
AfaI GTAC 2 cut(s) 1551, 1904
AflII CTTAAG 1 cut(s) 2105
AflIII ACRYGT 1 cut(s) 880
AgsI TTSAA 6 cut(s) 622, 1102, 1220, 1310, 1742, 1841
AhdI GACNNNNNGTC 1 cut(s) 2019
AleI CACNNNNGTG 1 cut(s) 122
AluBI AGCT 6 cut(s) 54, 180, 574, 1034, 1354, 1768
AluI AGCT 6 cut(s) 54, 180, 574, 1034, 1354, 1768
Alw21I GWGCWC 3 cut(s) 56, 477, 1269
Alw26I GTCTC 3 cut(s) 544, 1011, 1359
AlwI GGATC 2 cut(s) 1156, 1646
AlwNI CAGNNNCTG 1 cut(s) 1009
ApaI GGGCCC 1 cut(s) 297
ApoI RAATTY 1 cut(s) 1907
AsiSI GCGATCGC 1 cut(s) 597
Asp700I GAANNNNTTC 4 cut(s) 626, 1072, 1500, 1578
Asp718I GGTACC 1 cut(s) 1549
AspLEI GCGC 7 cut(s) 191, 321, 330, 350, 364, 1998, 2063
AsuC2I CCSGG 1 cut(s) 1746
AsuHPI GGTGA 1 cut(s) 1459
AsuII TTCGAA 1 cut(s) 1504
AvaII GGWCC 4 cut(s) 307, 426, 615, 2021
AxyI CCTNAGG 1 cut(s) 663
BaeGI GKGCMC 1 cut(s) 297
BaeI ACNNNNGTAYC 2 cut(s) 1541, 1574
BanI GGYRCC 5 cut(s) 188, 827, 1549, 1779, 1995
BanII GRGCYC 3 cut(s) 56, 297, 1126
BauI CACGAG 2 cut(s) 575, 588
BbrPI CACGTG 1 cut(s) 483
BbsI GAAGAC 5 cut(s) 102, 157, 216, 1493, 1609
Bbv12I GWGCWC 3 cut(s) 56, 477, 1269
BbvCI CCTCAGC 2 cut(s) 1355, 2009
BccI CCATC 8 cut(s) 333, 364, 389, 419, 1181, 1408, 1437, 1465
BceAI ACGGC 5 cut(s) 202, 463, 479, 1123, 1805
BcgI CGANNNNNNTGC 6 cut(s) 133, 167, 469, 503, 593, 627
BciVI GTATCC 2 cut(s) 809, 1179
BclI TGATCA 2 cut(s) 1479, 2116
BcnI CCSGG 1 cut(s) 1746
BcoDI GTCTC 3 cut(s) 544, 1011, 1359
BfaI CTAG 8 cut(s) 63, 543, 737, 1140, 1238, 1613, 1757, 2016
BfmI CTRYAG 3 cut(s) 518, 2002, 2034
BfoI RGCGCY 3 cut(s) 192, 1999, 2064
BfrI CTTAAG 1 cut(s) 2105
BfuI GTATCC 2 cut(s) 809, 1179
Bme1390I CCNGG 1 cut(s) 1746
Bme18I GGWCC 4 cut(s) 307, 426, 615, 2021
BmeRI GACNNNNNGTC 1 cut(s) 2019
BmrFI CCNGG 1 cut(s) 1746
BmsI GCATC 5 cut(s) 508, 789, 884, 1119, 1656
BpiI GAAGAC 5 cut(s) 102, 157, 216, 1493, 1609
BplI GAGNNNNNCTC 2 cut(s) 1757, 1789
Bpu10I CCTNAGC 3 cut(s) 1355, 1709, 2009
Bpu14I TTCGAA 1 cut(s) 1504
BpuEI CTTGAG 2 cut(s) 242, 1910
BpuMI CCSGG 1 cut(s) 1746
BsaAI YACGTR 1 cut(s) 483
BsaBI GATNNNNATC 1 cut(s) 110
BsaHI GRCGYC 5 cut(s) 189, 492, 639, 926, 1996
BsaJI CCNNGG 7 cut(s) 23, 120, 213, 288, 418, 1023, 1702
BsaWI WCCGGW 4 cut(s) 160, 655, 1015, 1899
BsaXI ACNNNNNCTCC 6 cut(s) 147, 177, 392, 422, 1641, 1671
Bse118I RCCGGY 1 cut(s) 42
Bse1I ACTGG 2 cut(s) 1003, 1238
Bse21I CCTNAGG 1 cut(s) 663
Bse3DI GCAATG 2 cut(s) 870, 1216
Bse8I GATNNNNATC 1 cut(s) 110
BseDI CCNNGG 7 cut(s) 23, 120, 213, 288, 418, 1023, 1702
BseGI GGATG 5 cut(s) 375, 899, 1090, 1386, 1576
BseJI GATNNNNATC 1 cut(s) 110
BseMI GCAATG 2 cut(s) 870, 1216
BseMII CTCAG 7 cut(s) 161, 677, 1210, 1282, 1346, 1891, 2000
BseNI ACTGG 2 cut(s) 1003, 1238
BseRI GAGGAG 1 cut(s) 347
BseSI GKGCMC 1 cut(s) 297
BseX3I CGGCCG 1 cut(s) 415
BseYI CCCAGC 1 cut(s) 887
BsgI GTGCAG 2 cut(s) 353, 1304
Bsh1236I CGCG 9 cut(s) 319, 330, 348, 362, 364, 420, 458, 599, 1325
Bsh1285I CGRYCG 4 cut(s) 418, 465, 597, 1600
BshNI GGYRCC 5 cut(s) 188, 827, 1549, 1779, 1995
BsiEI CGRYCG 4 cut(s) 418, 465, 597, 1600
BsiHKAI GWGCWC 3 cut(s) 56, 477, 1269
BsiSI CCGG 8 cut(s) 43, 57, 161, 526, 656, 1016, 1745, 1900
BslFI GGGAC 3 cut(s) 218, 439, 596
BsmAI GTCTC 3 cut(s) 544, 1011, 1359
BsmFI GGGAC 3 cut(s) 218, 439, 596
Bsp119I TTCGAA 1 cut(s) 1504
Bsp120I GGGCCC 1 cut(s) 293
Bsp1286I GDGCHC 5 cut(s) 56, 297, 477, 1126, 1269
Bsp143I GATC 9 cut(s) 105, 462, 594, 1161, 1213, 1479, 1651, 2065, 2116
Bsp19I CCATGG 1 cut(s) 1023
BspCNI CTCAG 7 cut(s) 160, 676, 1209, 1281, 1347, 1890, 2001
BspFNI CGCG 9 cut(s) 319, 330, 348, 362, 364, 420, 458, 599, 1325
BspMAI CTGCAG 1 cut(s) 522
BspPI GGATC 2 cut(s) 1156, 1646
BspQI GCTCTTC 2 cut(s) 1131, 1289
BspT104I TTCGAA 1 cut(s) 1504
BspT107I GGYRCC 5 cut(s) 188, 827, 1549, 1779, 1995
BspTI CTTAAG 1 cut(s) 2105
BsrDI GCAATG 2 cut(s) 870, 1216
BsrFI RCCGGY 1 cut(s) 42
BsrI ACTGG 2 cut(s) 1003, 1238
BssAI RCCGGY 1 cut(s) 42
BssECI CCNNGG 7 cut(s) 23, 120, 213, 288, 418, 1023, 1702
BssMI GATC 9 cut(s) 105, 462, 594, 1161, 1213, 1479, 1651, 2065, 2116
BssNI GRCGYC 5 cut(s) 189, 492, 639, 926, 1996
BssSI CACGAG 2 cut(s) 575, 588
BssT1I CCWWGG 3 cut(s) 23, 1023, 1702
Bst2BI CACGAG 2 cut(s) 575, 588
Bst4CI ACNGT 3 cut(s) 34, 472, 1601
Bst6I CTCTTC 7 cut(s) 398, 1131, 1289, 1334, 1411, 1501, 1954
BstACI GRCGYC 5 cut(s) 189, 492, 639, 926, 1996
BstAFI CTTAAG 1 cut(s) 2105
BstBAI YACGTR 1 cut(s) 483
BstBI TTCGAA 1 cut(s) 1504
BstC8I GCNNGC 7 cut(s) 142, 332, 531, 909, 1152, 1323, 1834
BstDEI CTNAG 9 cut(s) 147, 229, 663, 1196, 1268, 1355, 1709, 1877, 2009
BstDSI CCRYGG 3 cut(s) 288, 418, 1023
BstENI CCTNNNNNAGG 1 cut(s) 260
BstF5I GGATG 5 cut(s) 375, 899, 1090, 1386, 1576
BstFNI CGCG 9 cut(s) 319, 330, 348, 362, 364, 420, 458, 599, 1325
BstH2I RGCGCY 3 cut(s) 192, 1999, 2064
BstHHI GCGC 7 cut(s) 191, 321, 330, 350, 364, 1998, 2063
BstKTI GATC 9 cut(s) 108, 465, 597, 1164, 1216, 1482, 1654, 2068, 2119
BstMAI GTCTC 3 cut(s) 544, 1011, 1359
BstMBI GATC 9 cut(s) 105, 462, 594, 1161, 1213, 1479, 1651, 2065, 2116
BstMCI CGRYCG 4 cut(s) 418, 465, 597, 1600
BstNSI RCATGY 1 cut(s) 884
BstSCI CCNGG 1 cut(s) 1744
BstSFI CTRYAG 3 cut(s) 518, 2002, 2034
BstSLI GKGCMC 1 cut(s) 297
BstUI CGCG 9 cut(s) 319, 330, 348, 362, 364, 420, 458, 599, 1325
BstV2I GAAGAC 5 cut(s) 102, 157, 216, 1493, 1609
BstX2I RGATCY 2 cut(s) 1161, 1651
BstXI CCANNNNNNTGG 1 cut(s) 124
BstYI RGATCY 2 cut(s) 1161, 1651
BstZI CGGCCG 1 cut(s) 415
Bsu36I CCTNAGG 1 cut(s) 663
BsuI GTATCC 2 cut(s) 809, 1179
BtgI CCRYGG 3 cut(s) 288, 418, 1023
BtgZI GCGATG 2 cut(s) 844, 1776
BtsCI GGATG 5 cut(s) 375, 899, 1090, 1386, 1576
BtsI GCAGTG 1 cut(s) 950
BtsIMutI CAGTG 4 cut(s) 950, 1124, 1231, 1276
Cac8I GCNNGC 7 cut(s) 142, 332, 531, 909, 1152, 1323, 1834
CaiI CAGNNNCTG 1 cut(s) 1009
CfoI GCGC 7 cut(s) 191, 321, 330, 350, 364, 1998, 2063
Cfr10I RCCGGY 1 cut(s) 42
Cfr42I CCGCGG 1 cut(s) 421
CseI GACGC 7 cut(s) 475, 500, 588, 593, 647, 915, 1695
Csp6I GTAC 2 cut(s) 1550, 1903
CviQI GTAC 2 cut(s) 1550, 1903
DdeI CTNAG 9 cut(s) 147, 229, 663, 1196, 1268, 1355, 1709, 1877, 2009
DinI GGCGCC 2 cut(s) 190, 1997
DpnI GATC 9 cut(s) 107, 464, 596, 1163, 1215, 1481, 1653, 2067, 2118
DpnII GATC 9 cut(s) 105, 462, 594, 1161, 1213, 1479, 1651, 2065, 2116
DriI GACNNNNNGTC 1 cut(s) 2019
EaeI YGGCCR 1 cut(s) 415
EagI CGGCCG 1 cut(s) 415
Eam1104I CTCTTC 7 cut(s) 398, 1131, 1289, 1334, 1411, 1501, 1954
Eam1105I GACNNNNNGTC 1 cut(s) 2019
EarI CTCTTC 7 cut(s) 398, 1131, 1289, 1334, 1411, 1501, 1954
EciI GGCGGA 1 cut(s) 260
Ecl136II GAGCTC 1 cut(s) 54
EclXI CGGCCG 1 cut(s) 415
Eco130I CCWWGG 3 cut(s) 23, 1023, 1702
Eco147I AGGCCT 3 cut(s) 212, 1609, 1707
Eco24I GRGCYC 3 cut(s) 56, 297, 1126
Eco47I GGWCC 4 cut(s) 307, 426, 615, 2021
Eco52I CGGCCG 1 cut(s) 415
Eco53kI GAGCTC 1 cut(s) 54
Eco57I CTGAAG 1 cut(s) 1515
Eco72I CACGTG 1 cut(s) 483
Eco81I CCTNAGG 1 cut(s) 663
EcoICRI GAGCTC 1 cut(s) 54
EcoNI CCTNNNNNAGG 1 cut(s) 260
EcoO109I RGGNCCY 6 cut(s) 265, 293, 294, 307, 426, 2021
EcoT14I CCWWGG 3 cut(s) 23, 1023, 1702
EcoT22I ATGCAT 2 cut(s) 1262, 1532
EcoT38I GRGCYC 3 cut(s) 56, 297, 1126
EgeI GGCGCC 2 cut(s) 190, 1997
EheI GGCGCC 2 cut(s) 190, 1997
ErhI CCWWGG 3 cut(s) 23, 1023, 1702
FaqI GGGAC 3 cut(s) 218, 439, 596
FauI CCCGC 4 cut(s) 211, 254, 324, 560
FbaI TGATCA 2 cut(s) 1479, 2116
FblI GTMKAC 2 cut(s) 489, 771
FokI GGATG 5 cut(s) 382, 906, 1097, 1393, 1583
FriOI GRGCYC 3 cut(s) 56, 297, 1126
FspBI CTAG 8 cut(s) 63, 543, 737, 1140, 1238, 1613, 1757, 2016
GlaI GCGC 7 cut(s) 190, 320, 329, 349, 363, 1997, 2062
GsaI CCCAGC 1 cut(s) 891
HaeII RGCGCY 3 cut(s) 192, 1999, 2064
HapII CCGG 8 cut(s) 43, 57, 161, 526, 656, 1016, 1745, 1900
HgaI GACGC 7 cut(s) 475, 500, 588, 593, 647, 915, 1695
HhaI GCGC 7 cut(s) 191, 321, 330, 350, 364, 1998, 2063
Hin1I GRCGYC 5 cut(s) 189, 492, 639, 926, 1996
Hin6I GCGC 7 cut(s) 189, 319, 328, 348, 362, 1996, 2061
HinP1I GCGC 7 cut(s) 189, 319, 328, 348, 362, 1996, 2061
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HinfI GANTC 5 cut(s) 548, 1019, 1192, 1841, 2029
HpaII CCGG 8 cut(s) 43, 57, 161, 526, 656, 1016, 1745, 1900
HphI GGTGA 1 cut(s) 1459
Hpy166II GTNNAC 4 cut(s) 30, 490, 772, 1685
Hpy188I TCNGA 3 cut(s) 155, 1011, 1880
Hpy188III TCNNGA 5 cut(s) 259, 1217, 1583, 1927, 2123
Hpy8I GTNNAC 4 cut(s) 30, 490, 772, 1685
Hpy99I CGWCG 7 cut(s) 188, 491, 494, 604, 641, 1416, 1791
HpyCH4III ACNGT 3 cut(s) 34, 472, 1601
HpyCH4IV ACGT 3 cut(s) 87, 482, 1050
HpyF3I CTNAG 9 cut(s) 147, 229, 663, 1196, 1268, 1355, 1709, 1877, 2009
HpySE526I ACGT 3 cut(s) 87, 482, 1050
Hsp92I GRCGYC 5 cut(s) 189, 492, 639, 926, 1996
HspAI GCGC 7 cut(s) 189, 319, 328, 348, 362, 1996, 2061
KasI GGCGCC 2 cut(s) 188, 1995
KflI GGGWCCC 1 cut(s) 426
KpnI GGTACC 1 cut(s) 1553
Ksp22I TGATCA 2 cut(s) 1479, 2116
KspI CCGCGG 1 cut(s) 421
Kzo9I GATC 9 cut(s) 105, 462, 594, 1161, 1213, 1479, 1651, 2065, 2116
LguI GCTCTTC 2 cut(s) 1131, 1289
LmnI GCTCC 3 cut(s) 59, 480, 1039
LweI GCATC 5 cut(s) 508, 789, 884, 1119, 1656
MaeI CTAG 8 cut(s) 63, 543, 737, 1140, 1238, 1613, 1757, 2016
MaeII ACGT 3 cut(s) 87, 482, 1050
MaeIII GTNAC 9 cut(s) 466, 808, 998, 1051, 1229, 1447, 1871, 2038, 2100
MalI GATC 9 cut(s) 107, 464, 596, 1163, 1215, 1481, 1653, 2067, 2118
MboI GATC 9 cut(s) 105, 462, 594, 1161, 1213, 1479, 1651, 2065, 2116
MfeI CAATTG 1 cut(s) 1954
MflI RGATCY 2 cut(s) 1161, 1651
MhlI GDGCHC 5 cut(s) 56, 297, 477, 1126, 1269
Mly113I GGCGCC 2 cut(s) 189, 1996
MlyI GAGTC 2 cut(s) 557, 1186
MmeI TCCRAC 2 cut(s) 33, 133
Mph1103I ATGCAT 2 cut(s) 1262, 1532
MroXI GAANNNNTTC 4 cut(s) 626, 1072, 1500, 1578
MseI TTAA 6 cut(s) 714, 1089, 1158, 1187, 1515, 2106
MslI CAYNNNNRTG 2 cut(s) 122, 1310
MspA1I CMGCKG 3 cut(s) 180, 420, 1354
MspCI CTTAAG 1 cut(s) 2105
MspI CCGG 8 cut(s) 43, 57, 161, 526, 656, 1016, 1745, 1900
MspR9I CCNGG 1 cut(s) 1746
MunI CAATTG 1 cut(s) 1954
MvnI CGCG 9 cut(s) 319, 330, 348, 362, 364, 420, 458, 599, 1325
NarI GGCGCC 2 cut(s) 189, 1996
NciI CCSGG 1 cut(s) 1746
NcoI CCATGG 1 cut(s) 1023
NdeII GATC 9 cut(s) 105, 462, 594, 1161, 1213, 1479, 1651, 2065, 2116
NmeAIII GCCGAG 1 cut(s) 194
NmuCI GTSAC 7 cut(s) 466, 1051, 1229, 1447, 1871, 2038, 2100
NsiI ATGCAT 2 cut(s) 1262, 1532
NspI RCATGY 1 cut(s) 884
NspV TTCGAA 1 cut(s) 1504
OliI CACNNNNGTG 1 cut(s) 122
PceI AGGCCT 3 cut(s) 212, 1609, 1707
PciI ACATGT 1 cut(s) 880
PciSI GCTCTTC 2 cut(s) 1131, 1289
PcsI WCGNNNNNNNCGW 3 cut(s) 462, 642, 1693
PdmI GAANNNNTTC 4 cut(s) 626, 1072, 1500, 1578
PfeI GAWTC 3 cut(s) 1019, 1841, 2029
PflMI CCANNNNNTGG 4 cut(s) 837, 1043, 1179, 1567
Ple19I CGATCG 2 cut(s) 465, 597
PleI GAGTC 2 cut(s) 556, 1186
PluTI GGCGCC 2 cut(s) 192, 1999
PmaCI CACGTG 1 cut(s) 483
PmlI CACGTG 1 cut(s) 483
PpsI GAGTC 2 cut(s) 556, 1186
Ppu21I YACGTR 1 cut(s) 483
PpuMI RGGWCCY 3 cut(s) 307, 426, 2021
PscI ACATGT 1 cut(s) 880
Psp124BI GAGCTC 1 cut(s) 56
Psp1406I AACGTT 1 cut(s) 87
Psp5II RGGWCCY 3 cut(s) 307, 426, 2021
PspCI CACGTG 1 cut(s) 483
PspFI CCCAGC 1 cut(s) 887
PspOMI GGGCCC 1 cut(s) 293
PspPPI RGGWCCY 3 cut(s) 307, 426, 2021
PstI CTGCAG 1 cut(s) 522
PstNI CAGNNNCTG 1 cut(s) 1009
PsuI RGATCY 2 cut(s) 1161, 1651
PvuI CGATCG 2 cut(s) 465, 597
PvuII CAGCTG 2 cut(s) 180, 1354
RgaI GCGATCGC 1 cut(s) 597
RsaI GTAC 2 cut(s) 1551, 1904
RsaNI GTAC 2 cut(s) 1550, 1903
RseI CAYNNNNRTG 2 cut(s) 122, 1310
SacI GAGCTC 1 cut(s) 56
SacII CCGCGG 1 cut(s) 421
SalI GTCGAC 1 cut(s) 488
SapI GCTCTTC 2 cut(s) 1131, 1289
SaqAI TTAA 6 cut(s) 714, 1089, 1158, 1187, 1515, 2106
Sau3AI GATC 9 cut(s) 105, 462, 594, 1161, 1213, 1479, 1651, 2065, 2116
SchI GAGTC 2 cut(s) 557, 1186
ScrFI CCNGG 1 cut(s) 1746
SduI GDGCHC 5 cut(s) 56, 297, 477, 1126, 1269
SfaAI GCGATCGC 1 cut(s) 597
SfaNI GCATC 5 cut(s) 508, 789, 884, 1119, 1656
SfcI CTRYAG 3 cut(s) 518, 2002, 2034
SfoI GGCGCC 2 cut(s) 190, 1997
Sfr303I CCGCGG 1 cut(s) 421
SfuI TTCGAA 1 cut(s) 1504
SgfI GCGATCGC 1 cut(s) 597
SgrBI CCGCGG 1 cut(s) 421
SgrDI CGTCGACG 1 cut(s) 488
SinI GGWCC 4 cut(s) 307, 426, 615, 2021
SmiMI CAYNNNNRTG 2 cut(s) 122, 1310
SmlI CTYRAG 4 cut(s) 257, 1925, 2105, 2123
SmoI CTYRAG 4 cut(s) 257, 1925, 2105, 2123
SseBI AGGCCT 3 cut(s) 212, 1609, 1707
SspDI GGCGCC 2 cut(s) 188, 1995
SspI AATATT 1 cut(s) 744
SspMI CTAG 8 cut(s) 63, 543, 737, 1140, 1238, 1613, 1757, 2016
SstI GAGCTC 1 cut(s) 56
StuI AGGCCT 3 cut(s) 212, 1609, 1707
StyD4I CCNGG 1 cut(s) 1744
StyI CCWWGG 3 cut(s) 23, 1023, 1702
TaaI ACNGT 3 cut(s) 34, 472, 1601
TaiI ACGT 3 cut(s) 90, 485, 1053
TaqI TCGA 7 cut(s) 129, 173, 312, 384, 489, 636, 1504
TaqII GACCGA 1 cut(s) 603
TauI GCSGC 6 cut(s) 276, 420, 453, 461, 2001, 2113
TfiI GAWTC 3 cut(s) 1019, 1841, 2029
Tru1I TTAA 6 cut(s) 714, 1089, 1158, 1187, 1515, 2106
Tru9I TTAA 6 cut(s) 714, 1089, 1158, 1187, 1515, 2106
TscAI CASTG 4 cut(s) 950, 1124, 1238, 1276
TseFI GTSAC 7 cut(s) 466, 1051, 1229, 1447, 1871, 2038, 2100
Tsp45I GTSAC 7 cut(s) 466, 1051, 1229, 1447, 1871, 2038, 2100
TspDTI ATGAA 6 cut(s) 859, 1446, 1587, 1663, 1786, 2086
TspRI CASTG 4 cut(s) 950, 1124, 1238, 1276
Van91I CCANNNNNTGG 4 cut(s) 837, 1043, 1179, 1567
Vha464I CTTAAG 1 cut(s) 2105
VpaK11BI GGWCC 4 cut(s) 307, 426, 615, 2021
XagI CCTNNNNNAGG 1 cut(s) 260
XapI RAATTY 1 cut(s) 1907
XceI RCATGY 1 cut(s) 884
XcmI CCANNNNNNNNNTGG 1 cut(s) 1230
XmiI GTMKAC 2 cut(s) 489, 771
XmnI GAANNNNTTC 4 cut(s) 626, 1072, 1500, 1578
XspI CTAG 8 cut(s) 63, 543, 737, 1140, 1238, 1613, 1757, 2016
Zsp2I ATGCAT 2 cut(s) 1262, 1532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.