Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003871

Physical Location & Seq

Genomic Coordinates Forward (+)

61747062 .. 61751256

Gene Structure 4195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG387700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1518 bp

ATGAAACGCACTTCTCCACCGCTCCCAACAACCATGTCGTCACCATCGCACTCCAGGTGGAATAATGGCAATGGAGACGACTCGTTTGAGTTTAGTTCCCCGGAATGCTATGCTTGCACTCAGGCTGGTCTTCCGGTGTTTCACTCCACCCGCTGCCGTGACCCGATCCACCATTCCCAGCTGCAATGGGAGCGCTCCGCCGGTTCTTCTTTGACCCGGGTGGAGACCCCGACGGACCTCAAATGCAGCCCCACCGATCTGACCCGGACCCGGGTCATCGACCCGCGTAGCAACTACGTGAAAAGGTTGAACCGTGTCGTCCTCATGGCACGTGGCCTGGCGGTAGCCGTGGATCCGCTCTTCCTCTACGTCATCGCTTTGAGCACGAGTGGGGCGTCCTGCTTCTACATGGACGTCACCCTGGCCTTCTACGTGACCGTCATTCGCACGTGTCTGGACGCCTTACACGTGGCCCACATTTTGCTTCAGTTCAAGCTTGCATACGTGTCCAGTGAGTCGATGGTGATTGGCTGCGGGAAGCTCGTGTGGGACCCGCGAGAGATTGCGTGGCACTACATGAAGTCCTTCAGGCGGTTTTGGCTTGACGTCTTTGTCATTCTACCTATTCCTCAGATTGTAATTTGGCTAATTGAGCCAAAATTGCTTAGAGGAGAACGGCCGACACAGATAATGGTGACCGTTTTGCTAACCTTCTTGTTCCAGTTCACCCCCAAGGTCTACCACATTATTCACTTGGCCAAAAGACTAAAAAAGGTCACAGGTTACATCTTCTCATATGGCAACATTTGGTGGCGTTTCAAACTTAATGTCATCGCCTACTTAACTGCGTGTCACATTGTTGGAGGAATTTGGTATGTTCTTGCAACACAACGTGTAATGTCATGCATCCAAGAACAGTGTGAGAGTATTAAAAAGTGTAATCTATCTCTCTATTGCTCAAGGGCAATATTTTCCCATGGAAATTTTCCTGAAGTTAAAAAAATTCCAAAGATAAAGGCAATGTGCTTTGATGAGGACACTGAATTTGGCTACGGAATTTACCAGCCGATCCTTCTTGTCTATAATGGCAATACACGTGCCGTTAGGATCCTTTATCCCATTTACTGGGGTTTAAATAACCTAGGCTCCTTTGCCAACAATCTAACTCCTACAGGTGACTGGCTGGAACTGATATTCTCTTGCTGTTTGTGTCTGGCGGGCTTGAGCCTCTTTATTACTTTACTTGGAAACATCCAGTTTTTTCTGCATTCGATCATGTCAAACAAGAAGAAAATGCAGTTGAAATATCGAGACATGGAATGGTGGATGCATCGTAGACAGTTGCCGCATCATTTGAGAAAGAGAGTTCGACATTTTCAACGCTGCAGTTGGGCAGCAATGCAAGGACTGGATGAGATTGATTTGATCCAAAACTTTCCTGATGGACTCCGAAGGGACATCAAGCGCCATCTTTGCCTAGATCTTGTCTTGAAGGTAACTATCTACTTAGCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005215 GO:0005216 GO:0005217 GO:0005221 GO:0005222 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005262 GO:0005267 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007263 GO:0008150 GO:0008219 GO:0008324 GO:0009626 GO:0009987 GO:0012501 GO:0015075 GO:0015077 GO:0015079 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0019932 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031224 GO:0031226 GO:0033554 GO:0034050 GO:0034220 GO:0035556 GO:0042391 GO:0043855 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0065008 GO:0070509 GO:0070588 GO:0070838 GO:0071804 GO:0071805 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0099094

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

505

Amino Acids

58.48

Weight (kDa)

9.4

Isoelectric Point (pI)

51.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15410 AT5G15410
fragaria_vesca	FvH4_6g47520 FvH4_6g47520 FvH4_7g26890
malus_domestica	MD07G1248200.v1.1 MD09G1061000.v1.1 MD17G1056400.v1.1
prunus_persica	Prupe.2G272100_v2.0.a1 Prupe.3G259100_v2.0.a1
pyrus_communis	pycom07g22190 pycom111g05130 pycom17g05550
rosa_chinensis	RchiOBHm_Chr1g0373561 RchiOBHm_Chr2g0166581
rosa_laevigata	RLG00000021630 RLG00000026815
rosa_multiflora	Rmu_sc0002860.1_g000003 Rmu_sc0008222.1_g000009
rosa_roxburghii	Rroxscaffold_2G00084740 Rroxscaffold_4G00284140
rosa_rugosa	Rorug01G0378300 Rorug02G0524300 Rorug02G0524400
rosa_samantha	Rh1AG387700 Rh1BG352000 Rh1CG364700 Rh1DG382400 Rh2AG590200 Rh2BG602300 Rh2CG573000 Rh2DG612900
rosa_wichuraiana	Rw1G034770 Rw2G049200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	611
AatII	GACGTC	2 cut(s)	417, 609
AccB7I	CCANNNNNTGG	1 cut(s)	1125
AccBSI	CCGCTC	2 cut(s)	22, 358
AccI	GTMKAC	2 cut(s)	738, 1336
AccII	CGCG	2 cut(s)	286, 556
AclWI	GGATC	7 cut(s)	160, 347, 360, 1063, 1102, 1115, 1420
AcoI	YGGCCR	2 cut(s)	677, 756
AcsI	RAATTY	5 cut(s)	867, 982, 1002, 1043, 1056
AcuI	CTGAAG	3 cut(s)	470, 571, 1011
AcvI	CACGTG	4 cut(s)	332, 450, 469, 1097
AcyI	GRCGYC	4 cut(s)	395, 414, 459, 606
AdeI	CACNNNGTG	1 cut(s)	893
AfeI	AGCGCT	1 cut(s)	194
AfiI	CCNNNNNNNGG	4 cut(s)	270, 271, 591, 1125
AflIII	ACRYGT	5 cut(s)	449, 466, 504, 892, 1094
AgsI	TTSAA	6 cut(s)	310, 493, 820, 1303, 1379, 1492
AjnI	CCWGG	3 cut(s)	53, 336, 420
AluBI	AGCT	3 cut(s)	181, 496, 541
AluI	AGCT	3 cut(s)	181, 496, 541
Alw21I	GWGCWC	1 cut(s)	386
Alw26I	GTCTC	3 cut(s)	69, 218, 1305
AlwI	GGATC	7 cut(s)	160, 347, 360, 1063, 1102, 1115, 1420
Ama87I	CYCGRG	2 cut(s)	216, 270
Aor51HI	AGCGCT	1 cut(s)	194
AoxI	GGCC	5 cut(s)	334, 423, 471, 677, 756
ApeKI	GCWGC	6 cut(s)	153, 181, 246, 531, 1383, 1394
ApoI	RAATTY	5 cut(s)	867, 982, 1002, 1043, 1056
ArsI	GACNNNNNNTTYG	6 cut(s)	68, 100, 813, 845, 1028, 1060
Asp700I	GAANNNNTTC	1 cut(s)	584
AspA2I	CCTAGG	1 cut(s)	1141
AspLEI	GCGC	2 cut(s)	195, 1467
AspS9I	GGNCC	4 cut(s)	235, 267, 472, 550
AsuC2I	CCSGG	6 cut(s)	101, 217, 218, 265, 271, 272
AsuHPI	GGTGA	6 cut(s)	33, 409, 535, 706, 718, 1187
AvaI	CYCGRG	2 cut(s)	216, 270
AvaII	GGWCC	3 cut(s)	235, 267, 550
AvrII	CCTAGG	1 cut(s)	1141
BalI	TGGCCA	1 cut(s)	758
BamHI	GGATCC	2 cut(s)	352, 1107
BauI	CACGAG	2 cut(s)	385, 542
BbrPI	CACGTG	4 cut(s)	332, 450, 469, 1097
BbsI	GAAGAC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	386
BbvI	GCAGC	6 cut(s)	140, 168, 258, 518, 1370, 1406
BccI	CCATC	4 cut(s)	52, 514, 1436, 1476
BceAI	ACGGC	4 cut(s)	141, 332, 692, 1085
BciT130I	CCWGG	3 cut(s)	55, 338, 422
BcnI	CCSGG	6 cut(s)	101, 217, 218, 265, 271, 272
BcoDI	GTCTC	3 cut(s)	69, 218, 1305
BfaI	CTAG	2 cut(s)	1142, 1478
BfmI	CTRYAG	2 cut(s)	1170, 1384
BfoI	RGCGCY	2 cut(s)	196, 1468
BglII	AGATCT	1 cut(s)	1480
BisI	GCNGC	7 cut(s)	154, 182, 247, 532, 1346, 1384, 1395
BlnI	CCTAGG	1 cut(s)	1141
BlsI	GCNGC	7 cut(s)	155, 183, 248, 533, 1347, 1385, 1396
Bme1390I	CCNGG	9 cut(s)	55, 101, 217, 218, 265, 271, 272, 338, 422
Bme18I	GGWCC	3 cut(s)	235, 267, 550
BmeT110I	CYCGRG	2 cut(s)	216, 270
BmgT120I	GGNCC	4 cut(s)	235, 267, 472, 550
BmiI	GGNNCC	6 cut(s)	269, 354, 551, 552, 1109, 1147
BmrFI	CCNGG	9 cut(s)	55, 101, 217, 218, 265, 271, 272, 338, 422
BmrI	ACTGGG	1 cut(s)	1135
BmsI	GCATC	4 cut(s)	915, 1317, 1339, 1357
BmuI	ACTGGG	1 cut(s)	1135
BoxI	GACNNNNGTC	1 cut(s)	272
BpiI	GAAGAC	1 cut(s)	122
BpmI	CTGGAG	1 cut(s)	37
BpuEI	CTTGAG	2 cut(s)	943, 1243
BpuMI	CCSGG	6 cut(s)	101, 217, 218, 265, 271, 272
BsaAI	YACGTR	7 cut(s)	298, 332, 433, 450, 469, 505, 1097
BsaHI	GRCGYC	4 cut(s)	395, 414, 459, 606
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	8 cut(s)	99, 216, 270, 348, 420, 732, 976, 1141
BsaWI	WCCGGW	1 cut(s)	133
BsaXI	ACNNNNNCTCC	2 cut(s)	1130, 1160
Bsc4I	CCNNNNNNNGG	4 cut(s)	270, 271, 591, 1125
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	6 cut(s)	510, 721, 1130, 1184, 1255, 1413
Bse3DI	GCAATG	4 cut(s)	76, 191, 1026, 1404
BseBI	CCWGG	3 cut(s)	55, 338, 422
BseDI	CCNNGG	8 cut(s)	99, 216, 270, 348, 420, 732, 976, 1141
BseGI	GGATG	4 cut(s)	906, 1251, 1332, 1417
BseLI	CCNNNNNNNGG	4 cut(s)	270, 271, 591, 1125
BseMI	GCAATG	4 cut(s)	76, 191, 1026, 1404
BseMII	CTCAG	2 cut(s)	134, 644
BseNI	ACTGG	6 cut(s)	510, 721, 1130, 1184, 1255, 1413
BseRI	GAGGAG	1 cut(s)	684
BseX3I	CGGCCG	1 cut(s)	677
BseXI	GCAGC	6 cut(s)	140, 168, 258, 518, 1370, 1406
BseYI	CCCAGC	1 cut(s)	177
Bsh1236I	CGCG	2 cut(s)	286, 556
Bsh1285I	CGRYCG	1 cut(s)	680
BshFI	GGCC	5 cut(s)	336, 425, 473, 679, 758
BsiEI	CGRYCG	1 cut(s)	680
BsiHKAI	GWGCWC	1 cut(s)	386
BsiHKCI	CYCGRG	2 cut(s)	216, 270
BsiSI	CCGG	6 cut(s)	101, 134, 201, 217, 265, 271
BslFI	GGGAC	2 cut(s)	563, 1469
BslI	CCNNNNNNNGG	4 cut(s)	270, 271, 591, 1125
BsmAI	GTCTC	3 cut(s)	69, 218, 1305
BsmBI	CGTCTC	1 cut(s)	69
BsmFI	GGGAC	2 cut(s)	563, 1469
BsmI	GAATGC	2 cut(s)	110, 1267
BsnI	GGCC	5 cut(s)	336, 425, 473, 679, 758
Bso31I	GGTCTC	1 cut(s)	218
BsoBI	CYCGRG	2 cut(s)	216, 270
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp143I	GATC	8 cut(s)	165, 256, 352, 1068, 1107, 1272, 1425, 1480
Bsp19I	CCATGG	1 cut(s)	976
BspANI	GGCC	5 cut(s)	336, 425, 473, 679, 758
BspCNI	CTCAG	2 cut(s)	133, 643
BspFNI	CGCG	2 cut(s)	286, 556
BspLI	GGNNCC	6 cut(s)	269, 354, 551, 552, 1109, 1147
BspMAI	CTGCAG	1 cut(s)	1388
BspPI	GGATC	7 cut(s)	160, 347, 360, 1063, 1102, 1115, 1420
BspQI	GCTCTTC	1 cut(s)	365
BspTNI	GGTCTC	1 cut(s)	218
BsrBI	CCGCTC	2 cut(s)	22, 358
BsrDI	GCAATG	4 cut(s)	76, 191, 1026, 1404
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	6 cut(s)	510, 721, 1130, 1184, 1255, 1413
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	8 cut(s)	99, 216, 270, 348, 420, 732, 976, 1141
BssMI	GATC	8 cut(s)	165, 256, 352, 1068, 1107, 1272, 1425, 1480
BssNI	GRCGYC	4 cut(s)	395, 414, 459, 606
BssSI	CACGAG	2 cut(s)	385, 542
BssT1I	CCWWGG	3 cut(s)	732, 976, 1141
Bst2BI	CACGAG	2 cut(s)	385, 542
Bst2UI	CCWGG	3 cut(s)	55, 338, 422
Bst4CI	ACNGT	5 cut(s)	314, 439, 700, 918, 1341
Bst6I	CTCTTC	1 cut(s)	365
BstACI	GRCGYC	4 cut(s)	395, 414, 459, 606
BstBAI	YACGTR	7 cut(s)	298, 332, 433, 450, 469, 505, 1097
BstC8I	GCNNGC	3 cut(s)	115, 498, 1219
BstDEI	CTNAG	4 cut(s)	120, 630, 665, 1507
BstDSI	CCRYGG	2 cut(s)	348, 976
BstEII	GGTNACC	1 cut(s)	694
BstF5I	GGATG	4 cut(s)	906, 1251, 1332, 1417
BstFNI	CGCG	2 cut(s)	286, 556
BstH2I	RGCGCY	2 cut(s)	196, 1468
BstHHI	GCGC	2 cut(s)	195, 1467
BstKTI	GATC	8 cut(s)	168, 259, 355, 1071, 1110, 1275, 1428, 1483
BstMAI	GTCTC	3 cut(s)	69, 218, 1305
BstMBI	GATC	8 cut(s)	165, 256, 352, 1068, 1107, 1272, 1425, 1480
BstMCI	CGRYCG	1 cut(s)	680
BstMWI	GCNNNNNNNGC	6 cut(s)	114, 190, 598, 652, 661, 1473
BstNI	CCWGG	3 cut(s)	55, 338, 422
BstPAI	GACNNNNGTC	1 cut(s)	272
BstPI	GGTNACC	1 cut(s)	694
BstSCI	CCNGG	9 cut(s)	53, 99, 215, 216, 263, 269, 270, 336, 420
BstSFI	CTRYAG	2 cut(s)	1170, 1384
BstUI	CGCG	2 cut(s)	286, 556
BstV1I	GCAGC	6 cut(s)	140, 168, 258, 518, 1370, 1406
BstV2I	GAAGAC	1 cut(s)	122
BstX2I	RGATCY	3 cut(s)	352, 1107, 1480
BstYI	RGATCY	3 cut(s)	352, 1107, 1480
BstZI	CGGCCG	1 cut(s)	677
BsuRI	GGCC	5 cut(s)	336, 425, 473, 679, 758
BtgI	CCRYGG	2 cut(s)	348, 976
BtgZI	GCGATG	3 cut(s)	30, 358, 817
BtsCI	GGATG	4 cut(s)	906, 1251, 1332, 1417
BtsIMutI	CAGTG	3 cut(s)	517, 923, 1038
Cac8I	GCNNGC	3 cut(s)	115, 498, 1219
CfoI	GCGC	2 cut(s)	195, 1467
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	4 cut(s)	235, 267, 472, 550
Cfr9I	CCCGGG	2 cut(s)	216, 270
CseI	GACGC	2 cut(s)	384, 467
CviAII	CATG	8 cut(s)	34, 325, 409, 577, 903, 977, 1276, 1315
DdeI	CTNAG	4 cut(s)	120, 630, 665, 1507
DpnI	GATC	8 cut(s)	167, 258, 354, 1070, 1109, 1274, 1427, 1482
DpnII	GATC	8 cut(s)	165, 256, 352, 1068, 1107, 1272, 1425, 1480
DraI	TTTAAA	1 cut(s)	1134
DraIII	CACNNNGTG	1 cut(s)	893
DrdI	GACNNNNNNGTC	1 cut(s)	611
DseDI	GACNNNNNNGTC	1 cut(s)	611
EaeI	YGGCCR	2 cut(s)	677, 756
EagI	CGGCCG	1 cut(s)	677
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
EciI	GGCGGA	1 cut(s)	187
EclXI	CGGCCG	1 cut(s)	677
Eco130I	CCWWGG	3 cut(s)	732, 976, 1141
Eco31I	GGTCTC	1 cut(s)	218
Eco47I	GGWCC	3 cut(s)	235, 267, 550
Eco47III	AGCGCT	1 cut(s)	194
Eco52I	CGGCCG	1 cut(s)	677
Eco57I	CTGAAG	3 cut(s)	470, 571, 1011
Eco72I	CACGTG	4 cut(s)	332, 450, 469, 1097
Eco88I	CYCGRG	2 cut(s)	216, 270
Eco91I	GGTNACC	1 cut(s)	694
EcoO109I	RGGNCCY	1 cut(s)	550
EcoO65I	GGTNACC	1 cut(s)	694
EcoRII	CCWGG	3 cut(s)	53, 336, 420
EcoT14I	CCWWGG	3 cut(s)	732, 976, 1141
EcoT22I	ATGCAT	2 cut(s)	908, 1332
ErhI	CCWWGG	3 cut(s)	732, 976, 1141
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	8 cut(s)	37, 328, 412, 580, 906, 980, 1279, 1318
FaqI	GGGAC	2 cut(s)	563, 1469
FatI	CATG	8 cut(s)	33, 324, 408, 576, 902, 976, 1275, 1314
FauI	CCCGC	5 cut(s)	158, 291, 527, 561, 1210
FauNDI	CATATG	1 cut(s)	796
FblI	GTMKAC	2 cut(s)	738, 1336
Fnu4HI	GCNGC	7 cut(s)	154, 182, 247, 532, 1346, 1384, 1395
FokI	GGATG	4 cut(s)	893, 1238, 1339, 1424
Fsp4HI	GCNGC	7 cut(s)	154, 182, 247, 532, 1346, 1384, 1395
FspBI	CTAG	2 cut(s)	1142, 1478
GlaI	GCGC	2 cut(s)	194, 1466
GluI	GCNGC	7 cut(s)	154, 182, 247, 532, 1346, 1384, 1395
GsaI	CCCAGC	1 cut(s)	181
GsuI	CTGGAG	1 cut(s)	37
HaeII	RGCGCY	2 cut(s)	196, 1468
HaeIII	GGCC	5 cut(s)	336, 425, 473, 679, 758
HapII	CCGG	6 cut(s)	101, 134, 201, 217, 265, 271
HgaI	GACGC	2 cut(s)	384, 467
HhaI	GCGC	2 cut(s)	195, 1467
Hin1I	GRCGYC	4 cut(s)	395, 414, 459, 606
Hin1II	CATG	8 cut(s)	37, 328, 412, 580, 906, 980, 1279, 1318
Hin6I	GCGC	2 cut(s)	193, 1465
HinP1I	GCGC	2 cut(s)	193, 1465
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	3 cut(s)	80, 515, 1446
HpaII	CCGG	6 cut(s)	101, 134, 201, 217, 265, 271
HphI	GGTGA	6 cut(s)	33, 409, 535, 706, 718, 1187
Hpy166II	GTNNAC	3 cut(s)	726, 739, 1337
Hpy188I	TCNGA	3 cut(s)	261, 633, 1451
Hpy188III	TCNNGA	5 cut(s)	455, 989, 1310, 1439, 1489
Hpy8I	GTNNAC	3 cut(s)	726, 739, 1337
Hpy99I	CGWCG	1 cut(s)	235
HpyAV	CCTTC	6 cut(s)	436, 595, 721, 1082, 1446, 1486
HpyCH4III	ACNGT	5 cut(s)	314, 439, 700, 918, 1341
HpyF10VI	GCNNNNNNNGC	6 cut(s)	114, 190, 598, 652, 661, 1473
HpyF3I	CTNAG	4 cut(s)	120, 630, 665, 1507
Hsp92I	GRCGYC	4 cut(s)	395, 414, 459, 606
Hsp92II	CATG	8 cut(s)	37, 328, 412, 580, 906, 980, 1279, 1318
HspAI	GCGC	2 cut(s)	193, 1465
KflI	GGGWCCC	1 cut(s)	550
Kzo9I	GATC	8 cut(s)	165, 256, 352, 1068, 1107, 1272, 1425, 1480
LguI	GCTCTTC	1 cut(s)	365
LmnI	GCTCC	4 cut(s)	27, 190, 200, 1151
Lsp1109I	GCAGC	6 cut(s)	140, 168, 258, 518, 1370, 1406
LweI	GCATC	4 cut(s)	915, 1317, 1339, 1357
MaeI	CTAG	2 cut(s)	1142, 1478
MalI	GATC	8 cut(s)	167, 258, 354, 1070, 1109, 1274, 1427, 1482
MbiI	CCGCTC	2 cut(s)	22, 358
MboI	GATC	8 cut(s)	165, 256, 352, 1068, 1107, 1272, 1425, 1480
MboII	GAAGA	5 cut(s)	122, 198, 352, 781, 1300
MflI	RGATCY	3 cut(s)	352, 1107, 1480
MhlI	GDGCHC	1 cut(s)	386
MlsI	TGGCCA	1 cut(s)	758
MluCI	AATT	9 cut(s)	639, 648, 659, 867, 982, 1002, 1043, 1056, 1512
MluNI	TGGCCA	1 cut(s)	758
MlyI	GAGTC	3 cut(s)	74, 524, 1440
MmeI	TCCRAC	1 cut(s)	841
MnlI	CCTC	8 cut(s)	248, 332, 374, 639, 662, 857, 1027, 1238
Mox20I	TGGCCA	1 cut(s)	758
Mph1103I	ATGCAT	2 cut(s)	908, 1332
MroXI	GAANNNNTTC	1 cut(s)	584
MscI	TGGCCA	1 cut(s)	758
MseI	TTAA	6 cut(s)	825, 842, 930, 996, 1133, 1516
Msp20I	TGGCCA	1 cut(s)	758
MspA1I	CMGCKG	2 cut(s)	153, 181
MspI	CCGG	6 cut(s)	101, 134, 201, 217, 265, 271
MspR9I	CCNGG	9 cut(s)	55, 101, 217, 218, 265, 271, 272, 338, 422
Mva1269I	GAATGC	2 cut(s)	110, 1267
MvaI	CCWGG	3 cut(s)	55, 338, 422
MvnI	CGCG	2 cut(s)	286, 556
MwoI	GCNNNNNNNGC	6 cut(s)	114, 190, 598, 652, 661, 1473
NciI	CCSGG	6 cut(s)	101, 217, 218, 265, 271, 272
NcoI	CCATGG	1 cut(s)	976
NdeI	CATATG	1 cut(s)	796
NdeII	GATC	8 cut(s)	165, 256, 352, 1068, 1107, 1272, 1425, 1480
NlaIII	CATG	8 cut(s)	37, 328, 412, 580, 906, 980, 1279, 1318
NlaIV	GGNNCC	6 cut(s)	269, 354, 551, 552, 1109, 1147
NmuCI	GTSAC	8 cut(s)	39, 158, 415, 433, 694, 775, 851, 1175
NsiI	ATGCAT	2 cut(s)	908, 1332
PciSI	GCTCTTC	1 cut(s)	365
PcsI	WCGNNNNNNNCGW	2 cut(s)	392, 465
PctI	GAATGC	2 cut(s)	110, 1267
PdmI	GAANNNNTTC	1 cut(s)	584
PflMI	CCANNNNNTGG	1 cut(s)	1125
PkrI	GCNGC	7 cut(s)	155, 183, 248, 533, 1347, 1385, 1396
PleI	GAGTC	3 cut(s)	74, 523, 1440
PmaCI	CACGTG	4 cut(s)	332, 450, 469, 1097
PmlI	CACGTG	4 cut(s)	332, 450, 469, 1097
PpsI	GAGTC	3 cut(s)	74, 523, 1440
Ppu21I	YACGTR	7 cut(s)	298, 332, 433, 450, 469, 505, 1097
PpuMI	RGGWCCY	1 cut(s)	550
PshAI	GACNNNNGTC	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	550
Psp6I	CCWGG	3 cut(s)	53, 336, 420
PspCI	CACGTG	4 cut(s)	332, 450, 469, 1097
PspEI	GGTNACC	1 cut(s)	694
PspFI	CCCAGC	1 cut(s)	177
PspGI	CCWGG	3 cut(s)	53, 336, 420
PspN4I	GGNNCC	6 cut(s)	269, 354, 551, 552, 1109, 1147
PspPI	GGNCC	4 cut(s)	235, 267, 472, 550
PspPPI	RGGWCCY	1 cut(s)	550
PstI	CTGCAG	1 cut(s)	1388
PsuI	RGATCY	3 cut(s)	352, 1107, 1480
PvuII	CAGCTG	1 cut(s)	181
SapI	GCTCTTC	1 cut(s)	365
SaqAI	TTAA	6 cut(s)	825, 842, 930, 996, 1133, 1516
SatI	GCNGC	7 cut(s)	154, 182, 247, 532, 1346, 1384, 1395
Sau3AI	GATC	8 cut(s)	165, 256, 352, 1068, 1107, 1272, 1425, 1480
Sau96I	GGNCC	4 cut(s)	235, 267, 472, 550
SchI	GAGTC	3 cut(s)	74, 524, 1440
ScrFI	CCNGG	9 cut(s)	55, 101, 217, 218, 265, 271, 272, 338, 422
SduI	GDGCHC	1 cut(s)	386
SfaNI	GCATC	4 cut(s)	915, 1317, 1339, 1357
SfcI	CTRYAG	2 cut(s)	1170, 1384
SinI	GGWCC	3 cut(s)	235, 267, 550
SmaI	CCCGGG	2 cut(s)	218, 272
SmlI	CTYRAG	2 cut(s)	958, 1222
SmoI	CTYRAG	2 cut(s)	958, 1222
Sse9I	AATT	9 cut(s)	639, 648, 659, 867, 982, 1002, 1043, 1056, 1512
SspI	AATATT	1 cut(s)	969
SspMI	CTAG	2 cut(s)	1142, 1478
StyD4I	CCNGG	9 cut(s)	53, 99, 215, 216, 263, 269, 270, 336, 420
StyI	CCWWGG	3 cut(s)	732, 976, 1141
TaaI	ACNGT	5 cut(s)	314, 439, 700, 918, 1341
TaqI	TCGA	5 cut(s)	279, 518, 1271, 1309, 1369
TasI	AATT	9 cut(s)	639, 648, 659, 867, 982, 1002, 1043, 1056, 1512
TauI	GCSGC	1 cut(s)	1348
Tru1I	TTAA	6 cut(s)	825, 842, 930, 996, 1133, 1516
Tru9I	TTAA	6 cut(s)	825, 842, 930, 996, 1133, 1516
TscAI	CASTG	3 cut(s)	517, 923, 1045
TseFI	GTSAC	8 cut(s)	39, 158, 415, 433, 694, 775, 851, 1175
TseI	GCWGC	6 cut(s)	153, 181, 246, 531, 1383, 1394
Tsp45I	GTSAC	8 cut(s)	39, 158, 415, 433, 694, 775, 851, 1175
TspDTI	ATGAA	2 cut(s)	17, 593
TspGWI	ACGGA	2 cut(s)	248, 1068
TspMI	CCCGGG	2 cut(s)	216, 270
TspRI	CASTG	3 cut(s)	517, 923, 1045
Van91I	CCANNNNNTGG	1 cut(s)	1125
VpaK11BI	GGWCC	3 cut(s)	235, 267, 550
XapI	RAATTY	5 cut(s)	867, 982, 1002, 1043, 1056
XcmI	CCANNNNNNNNNTGG	1 cut(s)	517
XmaI	CCCGGG	2 cut(s)	216, 270
XmaJI	CCTAGG	1 cut(s)	1141
XmiI	GTMKAC	2 cut(s)	738, 1336
XmnI	GAANNNNTTC	1 cut(s)	584
XspI	CTAG	2 cut(s)	1142, 1478
ZraI	GACGTC	2 cut(s)	415, 607
Zsp2I	ATGCAT	2 cut(s)	908, 1332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.