Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003871

Physical Location & Seq

Genomic Coordinates Reverse (-)

62663847 .. 62668631

Gene Structure 4785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G034770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2040 bp

ATGATAAGACATGTTTCTCTAACAAAATGTAGGTGGAATAATGGCAATGGAGACGACTCGTTTGAGTTTAGTTCCCCGGAATGCTATGCTTGCACTCAGGCTGGTCTTCCGGTGTTTCACTCCACCCGCTGCCGTGACCCGATCCACCATTCCCAGCTGCAATGGGAGCGCTCCGCCGGTTCTTCTTTGACCCGGGTGGAGACCCCGACGGACCTCAAATGCAGCCCCACCGATCTGACCCGGACCCGGGTCATCGACCCGCGTAGCAACTACGTGAAAAGGTTGAACCGTGTCGTCCTCATGGCACGTGGCCTGGCGGTAGCCGTGGATCCGCTCTTCCTCTACGTCATCGCTTTGAGCACGAGTGGGGCGTCCTGCTTCTACATGGACGTCACCCTGGCCTTCTACGTGACCGTCATTCGCACGTGTCTGGACGCCTTACACGTGGCTCACATTTTGCTTCAGTTCAAGCTTGCATACGTGTCCAGTGAGTCGATGGTGATTGGCTGCGGGAAGCTCGTGTGGGACCCGCGAGAGATTGCGTGGCACTACATGAAGTCCTTCAGGCGGTTTTGGCTTGACGTCTTTGTCATTCTACCTATTCCTCAGATTGTAATTTGGCTAATTGAGCCAAAATTGCTTAGAGGAGAACGGCCGACACAGATAATGGTGACCGTTTTGCTAACCTTCTTGTTCCAGTTCATCCCCAAGGTCTACCACATTATTCACTTGGCCAAAAGACTAAAAAAGGTCACAGGTTACATCTTCTCATATGGCAACATTTGGTGGCGTTTCAAACTTAATGTCATCGCCTACTTAACTGCGTGTCACATTGTTGGAGGAATTTGGTATGTTCTTGCAACACAACGTGTAATGTCATGCATCCAAGAACAGTGTGAGAGTATTAAAAAGTGTAATCTATCTCTCTATTGCTCAAGGGCAATATTTTCCCATGGAAATTTTCCTGAAGTTAAAAAAATTCCAAAGATAAAGGCAATGTGCTTTGATGAGGACACTGAATTTGGCTACGGAATTTACCAGCCGATCCTTCTTGTCTATAATGGCAATACACGTGCCGTTAGGATCCTTTATCCCATTTACTGGGGTTTAAATAACCTAGGCTCCTTTGCCAACAATCTAACTCCTACAGGTGACTGGCTGGAACTGATATTCTCTTGCTGTTTGTGTCTGGCGGGCTTGAGCCTCTTTATTACTTTACTTGGAAACATCCAGTTTTTTCTGCATTCGATCATGTCAAACAAGAAGAAAATGCAGTTGAAATATCGAGACATGGAATGGTGGATGCATCGTAGACAGTTGCCGCATCATTTGAGAAAGAGAGTTCGACATTTTCAACGCTGCAGTTGGGCAGCAATGCAAGGACTGGATGAGATTGATTTGATCCAAAACTTTCCTGATGGACTCCGAAGGGACATCAAGCGCCATCTTTGCCTAGATCTTGTCTTGAAGGTACCGCTATTCCACAAGTTGGATGGTGTTATTCTTGACAACATATGTGATCTAGTCCGTCCACTAATCTACTCCAAGGGTGAAAAGATAATTAGAGAAGGAGACCCTGTCCAAAGGATGGTGTTCTTGGTTCATGGACGCATAAAACGTAGTCAAGGCCTGAGCAAAGGGTTCTTAGCCACGAGTGTGCTAGAACCTGGTGCCTTCTTTGGGGACGAGCTTCTCTCGTGGTGCCTCCGCCGTCCATTTTTAGGCCGCCTTCCTCCCTCATCCGCCACATTCACTACCATGGGACCTGTTGAAGCATTTGGCCTCGACGCAGAGTTTCTTCGCTACATTTCCGATCAATTTCGGTACAAATTCTCCAGCGAAAACCTCAGACGGACGGCGAGGTATTACTCGTCAAATTGGAGGACTTGGGGGGCTGTCATCATTCAACTTGCTTGGCGTCATCACAGGGAGAGGACTAAGGGTAGTCCAACACCAATACAAAATTGGGATATTGAGAACCGGCTTAAAATGTATGCTGCCATGTTCTTGTCAGTAAAGCCTCAGGACCATATGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005215 GO:0005216 GO:0005217 GO:0005221 GO:0005222 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005262 GO:0005267 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007263 GO:0008150 GO:0008219 GO:0008324 GO:0009626 GO:0009987 GO:0012501 GO:0015075 GO:0015077 GO:0015079 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0019932 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031224 GO:0031226 GO:0033554 GO:0034050 GO:0034220 GO:0035556 GO:0042391 GO:0043855 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0065008 GO:0070509 GO:0070588 GO:0070838 GO:0071804 GO:0071805 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0099094

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

679

Amino Acids

78.86

Weight (kDa)

9.49

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	514 - 602	4.6e-08	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15410 AT5G15410
fragaria_vesca	FvH4_6g47520 FvH4_6g47520 FvH4_7g26890
malus_domestica	MD07G1248200.v1.1 MD09G1061000.v1.1 MD17G1056400.v1.1
prunus_persica	Prupe.2G272100_v2.0.a1 Prupe.3G259100_v2.0.a1
pyrus_communis	pycom07g22190 pycom111g05130 pycom17g05550
rosa_chinensis	RchiOBHm_Chr1g0373561 RchiOBHm_Chr2g0166581
rosa_laevigata	RLG00000021630 RLG00000026815
rosa_multiflora	Rmu_sc0002860.1_g000003 Rmu_sc0008222.1_g000009
rosa_roxburghii	Rroxscaffold_2G00084740 Rroxscaffold_4G00284140
rosa_rugosa	Rorug01G0378300 Rorug02G0524300 Rorug02G0524400
rosa_samantha	Rh1AG387700 Rh1BG352000 Rh1CG364700 Rh1DG382400 Rh2AG590200 Rh2BG602300 Rh2CG573000 Rh2DG612900
rosa_wichuraiana	Rw1G034770 Rw2G049200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	587
AatII	GACGTC	2 cut(s)	393, 585
Acc65I	GGTACC	1 cut(s)	1471
AccB1I	GGYRCC	3 cut(s)	1471, 1670, 1701
AccB7I	CCANNNNNTGG	3 cut(s)	1101, 1489, 1588
AccBSI	CCGCTC	1 cut(s)	334
AccI	GTMKAC	2 cut(s)	714, 1312
AccII	CGCG	2 cut(s)	262, 532
AclWI	GGATC	7 cut(s)	136, 323, 336, 1039, 1078, 1091, 1396
AcoI	YGGCCR	2 cut(s)	653, 732
AcsI	RAATTY	6 cut(s)	843, 958, 978, 1019, 1032, 1829
AcuI	CTGAAG	3 cut(s)	446, 547, 987
AcvI	CACGTG	4 cut(s)	308, 426, 445, 1073
AcyI	GRCGYC	5 cut(s)	371, 390, 435, 582, 1918
AdeI	CACNNNGTG	1 cut(s)	869
AfaI	GTAC	2 cut(s)	1473, 1826
AfeI	AGCGCT	1 cut(s)	170
AfiI	CCNNNNNNNGG	8 cut(s)	246, 247, 567, 1101, 1489, 1588, 1680, 1721
AflIII	ACRYGT	6 cut(s)	10, 425, 442, 480, 868, 1070
AgsI	TTSAA	8 cut(s)	286, 469, 796, 1279, 1355, 1468, 1772, 1907
AjnI	CCWGG	3 cut(s)	312, 396, 1666
AleI	CACNNNNGTG	1 cut(s)	1655
AluBI	AGCT	4 cut(s)	157, 472, 517, 1690
AluI	AGCT	4 cut(s)	157, 472, 517, 1690
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	4 cut(s)	45, 194, 1281, 1566
AlwI	GGATC	7 cut(s)	136, 323, 336, 1039, 1078, 1091, 1396
Ama87I	CYCGRG	2 cut(s)	192, 246
Aor51HI	AGCGCT	1 cut(s)	170
AoxI	GGCC	7 cut(s)	310, 399, 653, 732, 1627, 1723, 1780
ApeKI	GCWGC	7 cut(s)	129, 157, 222, 507, 1359, 1370, 1997
ApoI	RAATTY	6 cut(s)	843, 958, 978, 1019, 1032, 1829
ArsI	GACNNNNNNTTYG	6 cut(s)	44, 76, 789, 821, 1004, 1036
Asp700I	GAANNNNTTC	1 cut(s)	560
Asp718I	GGTACC	1 cut(s)	1471
AspA2I	CCTAGG	1 cut(s)	1117
AspLEI	GCGC	2 cut(s)	171, 1443
AspS9I	GGNCC	5 cut(s)	211, 243, 526, 1763, 2026
AsuC2I	CCSGG	6 cut(s)	77, 193, 194, 241, 247, 248
AsuHPI	GGTGA	5 cut(s)	385, 511, 682, 1163, 1562
AvaI	CYCGRG	2 cut(s)	192, 246
AvaII	GGWCC	5 cut(s)	211, 243, 526, 1763, 2026
AvrII	CCTAGG	1 cut(s)	1117
AxyI	CCTNAGG	1 cut(s)	2022
BalI	TGGCCA	1 cut(s)	734
BamHI	GGATCC	2 cut(s)	328, 1083
BanI	GGYRCC	3 cut(s)	1471, 1670, 1701
BauI	CACGAG	4 cut(s)	361, 518, 1651, 1696
BbrPI	CACGTG	4 cut(s)	308, 426, 445, 1073
BbsI	GAAGAC	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	362
BbvI	GCAGC	7 cut(s)	116, 144, 234, 494, 1346, 1382, 1984
BccI	CCATC	5 cut(s)	490, 1412, 1452, 1487, 1582
BceAI	ACGGC	6 cut(s)	117, 308, 668, 1061, 1695, 1872
BciT130I	CCWGG	3 cut(s)	314, 398, 1668
BcnI	CCSGG	6 cut(s)	77, 193, 194, 241, 247, 248
BcoDI	GTCTC	4 cut(s)	45, 194, 1281, 1566
BfaI	CTAG	5 cut(s)	1118, 1454, 1523, 1661, 2038
BfmI	CTRYAG	2 cut(s)	1146, 1360
BfoI	RGCGCY	2 cut(s)	172, 1444
BglII	AGATCT	1 cut(s)	1456
BisI	GCNGC	9 cut(s)	130, 158, 223, 508, 1322, 1360, 1371, 1726, 1998
BlnI	CCTAGG	1 cut(s)	1117
BlsI	GCNGC	9 cut(s)	131, 159, 224, 509, 1323, 1361, 1372, 1727, 1999
Bme1390I	CCNGG	9 cut(s)	77, 193, 194, 241, 247, 248, 314, 398, 1668
Bme18I	GGWCC	5 cut(s)	211, 243, 526, 1763, 2026
BmeT110I	CYCGRG	2 cut(s)	192, 246
BmgT120I	GGNCC	5 cut(s)	211, 243, 526, 1763, 2026
BmrFI	CCNGG	9 cut(s)	77, 193, 194, 241, 247, 248, 314, 398, 1668
BmrI	ACTGGG	1 cut(s)	1111
BmsI	GCATC	4 cut(s)	891, 1293, 1315, 1333
BmuI	ACTGGG	1 cut(s)	1111
BoxI	GACNNNNGTC	1 cut(s)	248
BpiI	GAAGAC	1 cut(s)	98
BplI	GAGNNNNNCTC	2 cut(s)	1679, 1711
BpmI	CTGGAG	1 cut(s)	1819
Bpu10I	CCTNAGC	1 cut(s)	1631
BpuEI	CTTGAG	2 cut(s)	919, 1219
BpuMI	CCSGG	6 cut(s)	77, 193, 194, 241, 247, 248
BsaAI	YACGTR	7 cut(s)	274, 308, 409, 426, 445, 481, 1073
BsaHI	GRCGYC	5 cut(s)	371, 390, 435, 582, 1918
BsaI	GGTCTC	2 cut(s)	194, 1566
BsaWI	WCCGGW	1 cut(s)	109
BsaXI	ACNNNNNCTCC	6 cut(s)	1106, 1136, 1563, 1593, 1817, 1847
Bsc4I	CCNNNNNNNGG	8 cut(s)	246, 247, 567, 1101, 1489, 1588, 1680, 1721
Bse118I	RCCGGY	2 cut(s)	176, 1980
Bse1I	ACTGG	6 cut(s)	486, 697, 1106, 1160, 1231, 1389
Bse21I	CCTNAGG	1 cut(s)	2022
Bse3DI	GCAATG	4 cut(s)	52, 167, 1002, 1380
BseBI	CCWGG	3 cut(s)	314, 398, 1668
BseGI	GGATG	8 cut(s)	702, 882, 1227, 1308, 1393, 1498, 1593, 1739
BseLI	CCNNNNNNNGG	8 cut(s)	246, 247, 567, 1101, 1489, 1588, 1680, 1721
BseMI	GCAATG	4 cut(s)	52, 167, 1002, 1380
BseMII	CTCAG	5 cut(s)	110, 620, 1622, 1861, 2036
BseNI	ACTGG	6 cut(s)	486, 697, 1106, 1160, 1231, 1389
BseRI	GAGGAG	1 cut(s)	660
BseX3I	CGGCCG	1 cut(s)	653
BseXI	GCAGC	7 cut(s)	116, 144, 234, 494, 1346, 1382, 1984
BseYI	CCCAGC	1 cut(s)	153
Bsh1236I	CGCG	2 cut(s)	262, 532
Bsh1285I	CGRYCG	1 cut(s)	656
BshFI	GGCC	7 cut(s)	312, 401, 655, 734, 1629, 1725, 1782
BshNI	GGYRCC	3 cut(s)	1471, 1670, 1701
BsiEI	CGRYCG	1 cut(s)	656
BsiHKAI	GWGCWC	1 cut(s)	362
BsiHKCI	CYCGRG	2 cut(s)	192, 246
BsiSI	CCGG	7 cut(s)	77, 110, 177, 193, 241, 247, 1981
BslFI	GGGAC	4 cut(s)	539, 1445, 1697, 1776
BslI	CCNNNNNNNGG	8 cut(s)	246, 247, 567, 1101, 1489, 1588, 1680, 1721
BsmAI	GTCTC	4 cut(s)	45, 194, 1281, 1566
BsmBI	CGTCTC	1 cut(s)	45
BsmFI	GGGAC	4 cut(s)	539, 1445, 1697, 1776
BsmI	GAATGC	2 cut(s)	86, 1243
BsnI	GGCC	7 cut(s)	312, 401, 655, 734, 1629, 1725, 1782
Bso31I	GGTCTC	2 cut(s)	194, 1566
BsoBI	CYCGRG	2 cut(s)	192, 246
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp19I	CCATGG	2 cut(s)	952, 1758
BspANI	GGCC	7 cut(s)	312, 401, 655, 734, 1629, 1725, 1782
BspCNI	CTCAG	5 cut(s)	109, 619, 1623, 1860, 2035
BspFNI	CGCG	2 cut(s)	262, 532
BspMAI	CTGCAG	1 cut(s)	1364
BspPI	GGATC	7 cut(s)	136, 323, 336, 1039, 1078, 1091, 1396
BspQI	GCTCTTC	1 cut(s)	341
BspT107I	GGYRCC	3 cut(s)	1471, 1670, 1701
BspTNI	GGTCTC	2 cut(s)	194, 1566
BsrBI	CCGCTC	1 cut(s)	334
BsrDI	GCAATG	4 cut(s)	52, 167, 1002, 1380
BsrFI	RCCGGY	2 cut(s)	176, 1980
BsrI	ACTGG	6 cut(s)	486, 697, 1106, 1160, 1231, 1389
BssAI	RCCGGY	2 cut(s)	176, 1980
BssNI	GRCGYC	5 cut(s)	371, 390, 435, 582, 1918
BssSI	CACGAG	4 cut(s)	361, 518, 1651, 1696
BssT1I	CCWWGG	5 cut(s)	708, 952, 1117, 1545, 1758
Bst2BI	CACGAG	4 cut(s)	361, 518, 1651, 1696
Bst2UI	CCWGG	3 cut(s)	314, 398, 1668
Bst4CI	ACNGT	5 cut(s)	290, 415, 676, 894, 1317
Bst6I	CTCTTC	1 cut(s)	341
BstACI	GRCGYC	5 cut(s)	371, 390, 435, 582, 1918
BstBAI	YACGTR	7 cut(s)	274, 308, 409, 426, 445, 481, 1073
BstC8I	GCNNGC	3 cut(s)	91, 474, 1195
BstDEI	CTNAG	8 cut(s)	96, 606, 641, 1631, 1645, 1847, 1938, 2022
BstDSI	CCRYGG	3 cut(s)	324, 952, 1758
BstEII	GGTNACC	1 cut(s)	670
BstF5I	GGATG	8 cut(s)	702, 882, 1227, 1308, 1393, 1498, 1593, 1739
BstFNI	CGCG	2 cut(s)	262, 532
BstH2I	RGCGCY	2 cut(s)	172, 1444
BstHHI	GCGC	2 cut(s)	171, 1443
BstMAI	GTCTC	4 cut(s)	45, 194, 1281, 1566
BstMCI	CGRYCG	1 cut(s)	656
BstMWI	GCNNNNNNNGC	6 cut(s)	90, 166, 574, 628, 637, 1449
BstNI	CCWGG	3 cut(s)	314, 398, 1668
BstNSI	RCATGY	1 cut(s)	14
BstPAI	GACNNNNGTC	1 cut(s)	248
BstPI	GGTNACC	1 cut(s)	670
BstSCI	CCNGG	9 cut(s)	75, 191, 192, 239, 245, 246, 312, 396, 1666
BstSFI	CTRYAG	2 cut(s)	1146, 1360
BstUI	CGCG	2 cut(s)	262, 532
BstV1I	GCAGC	7 cut(s)	116, 144, 234, 494, 1346, 1382, 1984
BstV2I	GAAGAC	1 cut(s)	98
BstX2I	RGATCY	3 cut(s)	328, 1083, 1456
BstYI	RGATCY	3 cut(s)	328, 1083, 1456
BstZI	CGGCCG	1 cut(s)	653
Bsu36I	CCTNAGG	1 cut(s)	2022
BsuRI	GGCC	7 cut(s)	312, 401, 655, 734, 1629, 1725, 1782
BtgI	CCRYGG	3 cut(s)	324, 952, 1758
BtgZI	GCGATG	2 cut(s)	334, 793
BtsCI	GGATG	8 cut(s)	702, 882, 1227, 1308, 1393, 1498, 1593, 1739
BtsIMutI	CAGTG	3 cut(s)	493, 899, 1014
Cac8I	GCNNGC	3 cut(s)	91, 474, 1195
CfoI	GCGC	2 cut(s)	171, 1443
Cfr10I	RCCGGY	2 cut(s)	176, 1980
Cfr13I	GGNCC	5 cut(s)	211, 243, 526, 1763, 2026
Cfr9I	CCCGGG	2 cut(s)	192, 246
CseI	GACGC	5 cut(s)	360, 443, 1617, 1796, 1907
CsiI	ACCWGGT	1 cut(s)	1666
Csp6I	GTAC	2 cut(s)	1472, 1825
CviQI	GTAC	2 cut(s)	1472, 1825
DdeI	CTNAG	8 cut(s)	96, 606, 641, 1631, 1645, 1847, 1938, 2022
DraI	TTTAAA	1 cut(s)	1110
DraIII	CACNNNGTG	1 cut(s)	869
DrdI	GACNNNNNNGTC	1 cut(s)	587
DseDI	GACNNNNNNGTC	1 cut(s)	587
EaeI	YGGCCR	2 cut(s)	653, 732
EagI	CGGCCG	1 cut(s)	653
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
EciI	GGCGGA	3 cut(s)	163, 1697, 1732
EclXI	CGGCCG	1 cut(s)	653
Eco130I	CCWWGG	5 cut(s)	708, 952, 1117, 1545, 1758
Eco147I	AGGCCT	1 cut(s)	1629
Eco31I	GGTCTC	2 cut(s)	194, 1566
Eco47I	GGWCC	5 cut(s)	211, 243, 526, 1763, 2026
Eco47III	AGCGCT	1 cut(s)	170
Eco52I	CGGCCG	1 cut(s)	653
Eco57I	CTGAAG	3 cut(s)	446, 547, 987
Eco72I	CACGTG	4 cut(s)	308, 426, 445, 1073
Eco81I	CCTNAGG	1 cut(s)	2022
Eco88I	CYCGRG	2 cut(s)	192, 246
Eco91I	GGTNACC	1 cut(s)	670
EcoO109I	RGGNCCY	2 cut(s)	526, 1763
EcoO65I	GGTNACC	1 cut(s)	670
EcoRII	CCWGG	3 cut(s)	312, 396, 1666
EcoT14I	CCWWGG	5 cut(s)	708, 952, 1117, 1545, 1758
EcoT22I	ATGCAT	2 cut(s)	884, 1308
ErhI	CCWWGG	5 cut(s)	708, 952, 1117, 1545, 1758
Esp3I	CGTCTC	1 cut(s)	45
FaqI	GGGAC	4 cut(s)	539, 1445, 1697, 1776
FauI	CCCGC	5 cut(s)	134, 267, 503, 537, 1186
FauNDI	CATATG	3 cut(s)	772, 1514, 2031
FblI	GTMKAC	2 cut(s)	714, 1312
Fnu4HI	GCNGC	9 cut(s)	130, 158, 223, 508, 1322, 1360, 1371, 1726, 1998
FokI	GGATG	8 cut(s)	689, 869, 1214, 1315, 1400, 1505, 1600, 1726
Fsp4HI	GCNGC	9 cut(s)	130, 158, 223, 508, 1322, 1360, 1371, 1726, 1998
FspBI	CTAG	5 cut(s)	1118, 1454, 1523, 1661, 2038
GlaI	GCGC	2 cut(s)	170, 1442
GluI	GCNGC	9 cut(s)	130, 158, 223, 508, 1322, 1360, 1371, 1726, 1998
GsaI	CCCAGC	1 cut(s)	157
GsuI	CTGGAG	1 cut(s)	1819
HaeII	RGCGCY	2 cut(s)	172, 1444
HaeIII	GGCC	7 cut(s)	312, 401, 655, 734, 1629, 1725, 1782
HapII	CCGG	7 cut(s)	77, 110, 177, 193, 241, 247, 1981
HgaI	GACGC	5 cut(s)	360, 443, 1617, 1796, 1907
HhaI	GCGC	2 cut(s)	171, 1443
Hin1I	GRCGYC	5 cut(s)	371, 390, 435, 582, 1918
Hin6I	GCGC	2 cut(s)	169, 1441
HinP1I	GCGC	2 cut(s)	169, 1441
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	3 cut(s)	56, 491, 1422
HpaII	CCGG	7 cut(s)	77, 110, 177, 193, 241, 247, 1981
HphI	GGTGA	5 cut(s)	385, 511, 682, 1163, 1562
Hpy166II	GTNNAC	3 cut(s)	715, 1313, 1532
Hpy188I	TCNGA	5 cut(s)	237, 609, 1427, 1813, 1850
Hpy188III	TCNNGA	7 cut(s)	431, 965, 1286, 1415, 1465, 1505, 2024
Hpy8I	GTNNAC	3 cut(s)	715, 1313, 1532
Hpy99I	CGWCG	2 cut(s)	211, 1790
HpyAV	CCTTC	9 cut(s)	412, 571, 697, 1058, 1422, 1462, 1562, 1684, 1739
HpyCH4III	ACNGT	5 cut(s)	290, 415, 676, 894, 1317
HpyF10VI	GCNNNNNNNGC	6 cut(s)	90, 166, 574, 628, 637, 1449
HpyF3I	CTNAG	8 cut(s)	96, 606, 641, 1631, 1645, 1847, 1938, 2022
Hsp92I	GRCGYC	5 cut(s)	371, 390, 435, 582, 1918
HspAI	GCGC	2 cut(s)	169, 1441
KflI	GGGWCCC	1 cut(s)	526
KpnI	GGTACC	1 cut(s)	1475
LguI	GCTCTTC	1 cut(s)	341
LmnI	GCTCC	3 cut(s)	166, 176, 1127
Lsp1109I	GCAGC	7 cut(s)	116, 144, 234, 494, 1346, 1382, 1984
LweI	GCATC	4 cut(s)	891, 1293, 1315, 1333
MabI	ACCWGGT	1 cut(s)	1666
MaeI	CTAG	5 cut(s)	1118, 1454, 1523, 1661, 2038
MaeIII	GTNAC	8 cut(s)	134, 391, 409, 670, 751, 758, 827, 1151
MbiI	CCGCTC	1 cut(s)	334
MboII	GAAGA	6 cut(s)	98, 174, 328, 757, 1276, 1790
MflI	RGATCY	3 cut(s)	328, 1083, 1456
MhlI	GDGCHC	1 cut(s)	362
MlsI	TGGCCA	1 cut(s)	734
MluNI	TGGCCA	1 cut(s)	734
MlyI	GAGTC	3 cut(s)	50, 500, 1416
MmeI	TCCRAC	3 cut(s)	817, 1470, 1973
Mox20I	TGGCCA	1 cut(s)	734
Mph1103I	ATGCAT	2 cut(s)	884, 1308
MroXI	GAANNNNTTC	1 cut(s)	560
MscI	TGGCCA	1 cut(s)	734
MseI	TTAA	6 cut(s)	801, 818, 906, 972, 1109, 1986
MslI	CAYNNNNRTG	2 cut(s)	1655, 1757
Msp20I	TGGCCA	1 cut(s)	734
MspA1I	CMGCKG	2 cut(s)	129, 157
MspI	CCGG	7 cut(s)	77, 110, 177, 193, 241, 247, 1981
MspR9I	CCNGG	9 cut(s)	77, 193, 194, 241, 247, 248, 314, 398, 1668
Mva1269I	GAATGC	2 cut(s)	86, 1243
MvaI	CCWGG	3 cut(s)	314, 398, 1668
MvnI	CGCG	2 cut(s)	262, 532
MwoI	GCNNNNNNNGC	6 cut(s)	90, 166, 574, 628, 637, 1449
NciI	CCSGG	6 cut(s)	77, 193, 194, 241, 247, 248
NcoI	CCATGG	2 cut(s)	952, 1758
NdeI	CATATG	3 cut(s)	772, 1514, 2031
NmuCI	GTSAC	7 cut(s)	134, 391, 409, 670, 751, 827, 1151
NsiI	ATGCAT	2 cut(s)	884, 1308
NspI	RCATGY	1 cut(s)	14
OliI	CACNNNNGTG	1 cut(s)	1655
PceI	AGGCCT	1 cut(s)	1629
PciI	ACATGT	1 cut(s)	10
PciSI	GCTCTTC	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	3 cut(s)	368, 441, 1615
PctI	GAATGC	2 cut(s)	86, 1243
PdmI	GAANNNNTTC	1 cut(s)	560
PflFI	GACNNNGTC	1 cut(s)	1577
PflMI	CCANNNNNTGG	3 cut(s)	1101, 1489, 1588
PkrI	GCNGC	9 cut(s)	131, 159, 224, 509, 1323, 1361, 1372, 1727, 1999
PleI	GAGTC	3 cut(s)	50, 499, 1416
PmaCI	CACGTG	4 cut(s)	308, 426, 445, 1073
PmlI	CACGTG	4 cut(s)	308, 426, 445, 1073
PpsI	GAGTC	3 cut(s)	50, 499, 1416
Ppu21I	YACGTR	7 cut(s)	274, 308, 409, 426, 445, 481, 1073
PpuMI	RGGWCCY	2 cut(s)	526, 1763
PscI	ACATGT	1 cut(s)	10
PshAI	GACNNNNGTC	1 cut(s)	248
Psp5II	RGGWCCY	2 cut(s)	526, 1763
Psp6I	CCWGG	3 cut(s)	312, 396, 1666
PspCI	CACGTG	4 cut(s)	308, 426, 445, 1073
PspEI	GGTNACC	1 cut(s)	670
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	3 cut(s)	312, 396, 1666
PspPI	GGNCC	5 cut(s)	211, 243, 526, 1763, 2026
PspPPI	RGGWCCY	2 cut(s)	526, 1763
PstI	CTGCAG	1 cut(s)	1364
PsuI	RGATCY	3 cut(s)	328, 1083, 1456
PsyI	GACNNNGTC	1 cut(s)	1577
PvuII	CAGCTG	1 cut(s)	157
RsaI	GTAC	2 cut(s)	1473, 1826
RsaNI	GTAC	2 cut(s)	1472, 1825
RseI	CAYNNNNRTG	2 cut(s)	1655, 1757
SapI	GCTCTTC	1 cut(s)	341
SaqAI	TTAA	6 cut(s)	801, 818, 906, 972, 1109, 1986
SatI	GCNGC	9 cut(s)	130, 158, 223, 508, 1322, 1360, 1371, 1726, 1998
Sau96I	GGNCC	5 cut(s)	211, 243, 526, 1763, 2026
SchI	GAGTC	3 cut(s)	50, 500, 1416
ScrFI	CCNGG	9 cut(s)	77, 193, 194, 241, 247, 248, 314, 398, 1668
SduI	GDGCHC	1 cut(s)	362
SexAI	ACCWGGT	1 cut(s)	1666
SfaNI	GCATC	4 cut(s)	891, 1293, 1315, 1333
SfcI	CTRYAG	2 cut(s)	1146, 1360
SinI	GGWCC	5 cut(s)	211, 243, 526, 1763, 2026
SmaI	CCCGGG	2 cut(s)	194, 248
SmiMI	CAYNNNNRTG	2 cut(s)	1655, 1757
SmlI	CTYRAG	2 cut(s)	934, 1198
SmoI	CTYRAG	2 cut(s)	934, 1198
SseBI	AGGCCT	1 cut(s)	1629
SspI	AATATT	1 cut(s)	945
SspMI	CTAG	5 cut(s)	1118, 1454, 1523, 1661, 2038
StuI	AGGCCT	1 cut(s)	1629
StyD4I	CCNGG	9 cut(s)	75, 191, 192, 239, 245, 246, 312, 396, 1666
StyI	CCWWGG	5 cut(s)	708, 952, 1117, 1545, 1758
TaaI	ACNGT	5 cut(s)	290, 415, 676, 894, 1317
TaqI	TCGA	6 cut(s)	255, 494, 1247, 1285, 1345, 1785
TauI	GCSGC	2 cut(s)	1324, 1728
Tru1I	TTAA	6 cut(s)	801, 818, 906, 972, 1109, 1986
Tru9I	TTAA	6 cut(s)	801, 818, 906, 972, 1109, 1986
TscAI	CASTG	3 cut(s)	493, 899, 1021
TseFI	GTSAC	7 cut(s)	134, 391, 409, 670, 751, 827, 1151
TseI	GCWGC	7 cut(s)	129, 157, 222, 507, 1359, 1370, 1997
Tsp45I	GTSAC	7 cut(s)	134, 391, 409, 670, 751, 827, 1151
TspDTI	ATGAA	3 cut(s)	569, 691, 1592
TspGWI	ACGGA	4 cut(s)	224, 1044, 1517, 1867
TspMI	CCCGGG	2 cut(s)	192, 246
TspRI	CASTG	3 cut(s)	493, 899, 1021
Tth111I	GACNNNGTC	1 cut(s)	1577
Van91I	CCANNNNNTGG	3 cut(s)	1101, 1489, 1588
VpaK11BI	GGWCC	5 cut(s)	211, 243, 526, 1763, 2026
XapI	RAATTY	6 cut(s)	843, 958, 978, 1019, 1032, 1829
XceI	RCATGY	1 cut(s)	14
XcmI	CCANNNNNNNNNTGG	3 cut(s)	493, 1490, 1962
XmaI	CCCGGG	2 cut(s)	192, 246
XmaJI	CCTAGG	1 cut(s)	1117
XmiI	GTMKAC	2 cut(s)	714, 1312
XmnI	GAANNNNTTC	1 cut(s)	560
XspI	CTAG	5 cut(s)	1118, 1454, 1523, 1661, 2038
ZraI	GACGTC	2 cut(s)	391, 583
Zsp2I	ATGCAT	2 cut(s)	884, 1308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.