Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003871

Physical Location & Seq

Genomic Coordinates Forward (+)

61734699 .. 61738502

Gene Structure 3804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59742

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2031 bp

ATGTCGTCACCATCGCACTCCAGGTCGAATAATGGCAACGGAGACGACTCGTTTGAGTTTAGTTCCCCGGAATGCTATGCTTGCACTCAGGCGGGTCATCCGGTGTTTCACTCCACCCGCTGCCGTGACCCGATCCACCATTCCCAGCTGCAATGGGAGCGCTCCGCCGGTTCTTCTTTGACCCGGGTGGAGACCCCGACGGACCTCAAATGCAGCCCCACCGATCTGACCCGGACCCGGGTCATCGACCCGCGTAGCAACTACGTGAAAAGGTTGAACCGTGTCGTCCTCATGGCACGTGGCCTGGCGGTAGCGGTGGATCCGCTCTTCCTCTACGTCATCGCTTTGAGCACGAGTGGGGCGTCCTGCTTCTACATGGACGTCACCCTGGCCTTCTACGTGACCGTCATTCGCACGTGTCTGGACGCCTTACACGTGGCCCACATTTTGCTTCAGTTCAAGCTTGCATACGTGTCCAGTGAGTCGATGGTGATTGGCTGCGGGAAGCTCGTGTGGGACCCGCGAGAGATTGCGTGGCACTACATGAAGTCCTTTAGGCGGTTTTGGCTCGACGTCTTTGTCATTCTACCTATTCCTCAGATTGTAATTTGGCTAATTGAGCCAAAATTGCTTAGAGGAGAACGGCCGACACAGATAATGGTGACCGTTTTGCTAACCTTCTTGTTCCAGTTCACCCCCAAGGTCTACCACATTATTCACTTGGCCAAAAGACTAAAAAAGGTCACAGGTTACATCTTCTCATATGGCAACATTTGGTGGCGTTTCAAACTTAATGTCATCGCCTACTTAACTGCGTGTCACATTGTTGGAGGAATTTGGTATGTTCTTGCAACACAACGTGTAATGTCATGCATCCAAGAACAGTGTGAGAGTATTAAAAAGTGTAATCTATCTCTCTATTGCTCAAGGGCAATATTTTCCCATGGAAATTTTCCTGAAGTTAAAAAAATTCCAAAGATAAAGGCAATGTGCTTTGATGAGGACACTGAATTTGGCTACGGAATTTACCAGCCGATCCTTCTTGTCTATAATGGCAATACACGTGCCGTTAGGATCCTTTATCCCATTTACTGGGGTTTAAATAACCTAGGCTCCTTTGCCAACAATCTAACTCCTACAGGTGACTGGCTGGAACTGATATTCTCTTGCTGTTTGTGTCTGGCGGGCTTGAGCCTCTTTATTACTTTACTTGGAAACATCCAGTTTTTTCTGCATTCGATCATGTCAAACAAGAAGAAAATGCAGTTGAAATATCGAGACATGGAATGGTGGATGCATCGTAGACAGTTGCCGCATCATTTGAGAAAGAGAGTTCGACATTTTCAACGCTGCAGTTGGGCAGCAATGCAAGGACTGGATGAGATTGATTTGATCCAAAACTTTCCTGATGGACTCCGAAGGGACATCAAGCGCCATCTTTGCCTAGATCTTGTCTTGAAGGTACCGCTATTCCACAAGTTGGATGGTGTTATTCTTGACAACATATGTGATCTAGTCCGTCCACTAATCTACTCCAAGGGTGAAAAGATAATTAGAGAAGGAGACCCTGTCCAAAGGATGGTGTTCTTGGTTCATGGACGCATAAAACGTAGTCAAGGCCTGAGCAAAGGGTTCTTAGCCACGAGTGTGCTAGAACCTGGTGCCTTCTTTGGGGACGAGCTTCTCTCGTGGTGCCTCCGCCGTCCATTTTTAGGCCGCCTTCCTCCCTCATCCGCCACATTCACTACCATGGGACCTGTTGAAGCATTTGGCCTCGACGCAGAGTTTCTTCGCTACATTTCCGATCAATTTCGGTACAAATTCTCCAGCGAAAACCTCAGACGGACGGCGAGGTATTACTCGTCAAATTGGAGGACTTGGGGGGCTGTCATCATTCAACTTGCTTGGCGTCATCACAGGGAGAGGACTAAGGGTAGTCCAACACCAATACAAAATTGGGATATTGAGAACCGGCTTAAAATGTATGCTGCCATGTTCTTGTCAGTAAAGCCTCAGGACCATATGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005215 GO:0005216 GO:0005217 GO:0005221 GO:0005222 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005262 GO:0005267 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007263 GO:0008150 GO:0008219 GO:0008324 GO:0009626 GO:0009987 GO:0012501 GO:0015075 GO:0015077 GO:0015079 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0019932 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031224 GO:0031226 GO:0033554 GO:0034050 GO:0034220 GO:0035556 GO:0042391 GO:0043855 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0065008 GO:0070509 GO:0070588 GO:0070838 GO:0071804 GO:0071805 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0099094

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

676

Amino Acids

78.31

Weight (kDa)

9.46

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	511 - 599	4.6e-08	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15410 AT5G15410
fragaria_vesca	FvH4_6g47520 FvH4_6g47520 FvH4_7g26890
malus_domestica	MD07G1248200.v1.1 MD09G1061000.v1.1 MD17G1056400.v1.1
prunus_persica	Prupe.2G272100_v2.0.a1 Prupe.3G259100_v2.0.a1
pyrus_communis	pycom07g22190 pycom111g05130 pycom17g05550
rosa_chinensis	RchiOBHm_Chr1g0373561 RchiOBHm_Chr2g0166581
rosa_laevigata	RLG00000021630 RLG00000026815
rosa_multiflora	Rmu_sc0002860.1_g000003 Rmu_sc0008222.1_g000009
rosa_roxburghii	Rroxscaffold_2G00084740 Rroxscaffold_4G00284140
rosa_rugosa	Rorug01G0378300 Rorug02G0524300 Rorug02G0524400
rosa_samantha	Rh1AG387700 Rh1BG352000 Rh1CG364700 Rh1DG382400 Rh2AG590200 Rh2BG602300 Rh2CG573000 Rh2DG612900
rosa_wichuraiana	Rw1G034770 Rw2G049200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	578
AatII	GACGTC	2 cut(s)	384, 576
Acc65I	GGTACC	1 cut(s)	1462
AccB1I	GGYRCC	3 cut(s)	1462, 1661, 1692
AccB7I	CCANNNNNTGG	3 cut(s)	1092, 1480, 1579
AccBSI	CCGCTC	1 cut(s)	325
AccI	GTMKAC	2 cut(s)	705, 1303
AccII	CGCG	2 cut(s)	253, 523
AclWI	GGATC	7 cut(s)	127, 314, 327, 1030, 1069, 1082, 1387
AcoI	YGGCCR	2 cut(s)	644, 723
AcsI	RAATTY	6 cut(s)	834, 949, 969, 1010, 1023, 1820
AcuI	CTGAAG	2 cut(s)	437, 978
AcvI	CACGTG	4 cut(s)	299, 417, 436, 1064
AcyI	GRCGYC	5 cut(s)	362, 381, 426, 573, 1909
AdeI	CACNNNGTG	1 cut(s)	860
AfaI	GTAC	2 cut(s)	1464, 1817
AfeI	AGCGCT	1 cut(s)	161
AfiI	CCNNNNNNNGG	8 cut(s)	237, 238, 558, 1092, 1480, 1579, 1671, 1712
AflIII	ACRYGT	5 cut(s)	416, 433, 471, 859, 1061
AgsI	TTSAA	8 cut(s)	277, 460, 787, 1270, 1346, 1459, 1763, 1898
AjnI	CCWGG	4 cut(s)	20, 303, 387, 1657
AleI	CACNNNNGTG	1 cut(s)	1646
AluBI	AGCT	4 cut(s)	148, 463, 508, 1681
AluI	AGCT	4 cut(s)	148, 463, 508, 1681
Alw21I	GWGCWC	1 cut(s)	353
Alw26I	GTCTC	4 cut(s)	36, 185, 1272, 1557
AlwI	GGATC	7 cut(s)	127, 314, 327, 1030, 1069, 1082, 1387
Ama87I	CYCGRG	2 cut(s)	183, 237
Aor51HI	AGCGCT	1 cut(s)	161
AoxI	GGCC	8 cut(s)	301, 390, 438, 644, 723, 1618, 1714, 1771
ApeKI	GCWGC	7 cut(s)	120, 148, 213, 498, 1350, 1361, 1988
ApoI	RAATTY	6 cut(s)	834, 949, 969, 1010, 1023, 1820
ArsI	GACNNNNNNTTYG	6 cut(s)	35, 67, 780, 812, 995, 1027
Asp718I	GGTACC	1 cut(s)	1462
AspA2I	CCTAGG	1 cut(s)	1108
AspLEI	GCGC	2 cut(s)	162, 1434
AspS9I	GGNCC	6 cut(s)	202, 234, 439, 517, 1754, 2017
AsuC2I	CCSGG	6 cut(s)	68, 184, 185, 232, 238, 239
AsuHPI	GGTGA	6 cut(s)	376, 502, 673, 685, 1154, 1553
AvaI	CYCGRG	2 cut(s)	183, 237
AvaII	GGWCC	5 cut(s)	202, 234, 517, 1754, 2017
AvrII	CCTAGG	1 cut(s)	1108
AxyI	CCTNAGG	1 cut(s)	2013
BalI	TGGCCA	1 cut(s)	725
BamHI	GGATCC	2 cut(s)	319, 1074
BanI	GGYRCC	3 cut(s)	1462, 1661, 1692
BauI	CACGAG	4 cut(s)	352, 509, 1642, 1687
BbrPI	CACGTG	4 cut(s)	299, 417, 436, 1064
Bbv12I	GWGCWC	1 cut(s)	353
BbvI	GCAGC	7 cut(s)	107, 135, 225, 485, 1337, 1373, 1975
BccI	CCATC	6 cut(s)	19, 481, 1403, 1443, 1478, 1573
BceAI	ACGGC	5 cut(s)	108, 659, 1052, 1686, 1863
BciT130I	CCWGG	4 cut(s)	22, 305, 389, 1659
BcnI	CCSGG	6 cut(s)	68, 184, 185, 232, 238, 239
BcoDI	GTCTC	4 cut(s)	36, 185, 1272, 1557
BfaI	CTAG	5 cut(s)	1109, 1445, 1514, 1652, 2029
BfmI	CTRYAG	2 cut(s)	1137, 1351
BfoI	RGCGCY	2 cut(s)	163, 1435
BglII	AGATCT	1 cut(s)	1447
BisI	GCNGC	9 cut(s)	121, 149, 214, 499, 1313, 1351, 1362, 1717, 1989
BlnI	CCTAGG	1 cut(s)	1108
BlsI	GCNGC	9 cut(s)	122, 150, 215, 500, 1314, 1352, 1363, 1718, 1990
Bme18I	GGWCC	5 cut(s)	202, 234, 517, 1754, 2017
BmeT110I	CYCGRG	2 cut(s)	183, 237
BmgT120I	GGNCC	6 cut(s)	202, 234, 439, 517, 1754, 2017
BmrI	ACTGGG	1 cut(s)	1102
BmsI	GCATC	4 cut(s)	882, 1284, 1306, 1324
BmuI	ACTGGG	1 cut(s)	1102
BoxI	GACNNNNGTC	1 cut(s)	239
BplI	GAGNNNNNCTC	2 cut(s)	1670, 1702
BpmI	CTGGAG	2 cut(s)	4, 1810
Bpu10I	CCTNAGC	1 cut(s)	1622
BpuEI	CTTGAG	2 cut(s)	910, 1210
BpuMI	CCSGG	6 cut(s)	68, 184, 185, 232, 238, 239
BsaAI	YACGTR	7 cut(s)	265, 299, 400, 417, 436, 472, 1064
BsaHI	GRCGYC	5 cut(s)	362, 381, 426, 573, 1909
BsaI	GGTCTC	2 cut(s)	185, 1557
BsaJI	CCNNGG	9 cut(s)	66, 183, 237, 387, 699, 943, 1108, 1536, 1749
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	6 cut(s)	1097, 1127, 1554, 1584, 1808, 1838
Bsc4I	CCNNNNNNNGG	8 cut(s)	237, 238, 558, 1092, 1480, 1579, 1671, 1712
Bse118I	RCCGGY	2 cut(s)	167, 1971
Bse1I	ACTGG	6 cut(s)	477, 688, 1097, 1151, 1222, 1380
Bse21I	CCTNAGG	1 cut(s)	2013
Bse3DI	GCAATG	3 cut(s)	158, 993, 1371
BseBI	CCWGG	4 cut(s)	22, 305, 389, 1659
BseDI	CCNNGG	9 cut(s)	66, 183, 237, 387, 699, 943, 1108, 1536, 1749
BseGI	GGATG	8 cut(s)	97, 873, 1218, 1299, 1384, 1489, 1584, 1730
BseLI	CCNNNNNNNGG	8 cut(s)	237, 238, 558, 1092, 1480, 1579, 1671, 1712
BseMI	GCAATG	3 cut(s)	158, 993, 1371
BseMII	CTCAG	5 cut(s)	101, 611, 1613, 1852, 2027
BseNI	ACTGG	6 cut(s)	477, 688, 1097, 1151, 1222, 1380
BseRI	GAGGAG	1 cut(s)	651
BseX3I	CGGCCG	1 cut(s)	644
BseXI	GCAGC	7 cut(s)	107, 135, 225, 485, 1337, 1373, 1975
BseYI	CCCAGC	1 cut(s)	144
Bsh1236I	CGCG	2 cut(s)	253, 523
Bsh1285I	CGRYCG	1 cut(s)	647
BshFI	GGCC	8 cut(s)	303, 392, 440, 646, 725, 1620, 1716, 1773
BshNI	GGYRCC	3 cut(s)	1462, 1661, 1692
BsiEI	CGRYCG	1 cut(s)	647
BsiHKAI	GWGCWC	1 cut(s)	353
BsiHKCI	CYCGRG	2 cut(s)	183, 237
BsiSI	CCGG	7 cut(s)	68, 101, 168, 184, 232, 238, 1972
BslFI	GGGAC	4 cut(s)	530, 1436, 1688, 1767
BslI	CCNNNNNNNGG	8 cut(s)	237, 238, 558, 1092, 1480, 1579, 1671, 1712
BsmAI	GTCTC	4 cut(s)	36, 185, 1272, 1557
BsmBI	CGTCTC	1 cut(s)	36
BsmFI	GGGAC	4 cut(s)	530, 1436, 1688, 1767
BsmI	GAATGC	2 cut(s)	77, 1234
BsnI	GGCC	8 cut(s)	303, 392, 440, 646, 725, 1620, 1716, 1773
Bso31I	GGTCTC	2 cut(s)	185, 1557
BsoBI	CYCGRG	2 cut(s)	183, 237
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp19I	CCATGG	2 cut(s)	943, 1749
BspANI	GGCC	8 cut(s)	303, 392, 440, 646, 725, 1620, 1716, 1773
BspCNI	CTCAG	5 cut(s)	100, 610, 1614, 1851, 2026
BspFNI	CGCG	2 cut(s)	253, 523
BspMAI	CTGCAG	1 cut(s)	1355
BspPI	GGATC	7 cut(s)	127, 314, 327, 1030, 1069, 1082, 1387
BspQI	GCTCTTC	1 cut(s)	332
BspT107I	GGYRCC	3 cut(s)	1462, 1661, 1692
BspTNI	GGTCTC	2 cut(s)	185, 1557
BsrBI	CCGCTC	1 cut(s)	325
BsrDI	GCAATG	3 cut(s)	158, 993, 1371
BsrFI	RCCGGY	2 cut(s)	167, 1971
BsrI	ACTGG	6 cut(s)	477, 688, 1097, 1151, 1222, 1380
BssAI	RCCGGY	2 cut(s)	167, 1971
BssECI	CCNNGG	9 cut(s)	66, 183, 237, 387, 699, 943, 1108, 1536, 1749
BssNI	GRCGYC	5 cut(s)	362, 381, 426, 573, 1909
BssSI	CACGAG	4 cut(s)	352, 509, 1642, 1687
BssT1I	CCWWGG	5 cut(s)	699, 943, 1108, 1536, 1749
Bst2BI	CACGAG	4 cut(s)	352, 509, 1642, 1687
Bst2UI	CCWGG	4 cut(s)	22, 305, 389, 1659
Bst4CI	ACNGT	5 cut(s)	281, 406, 667, 885, 1308
Bst6I	CTCTTC	1 cut(s)	332
BstACI	GRCGYC	5 cut(s)	362, 381, 426, 573, 1909
BstBAI	YACGTR	7 cut(s)	265, 299, 400, 417, 436, 472, 1064
BstC8I	GCNNGC	3 cut(s)	82, 465, 1186
BstDEI	CTNAG	8 cut(s)	87, 597, 632, 1622, 1636, 1838, 1929, 2013
BstDSI	CCRYGG	2 cut(s)	943, 1749
BstEII	GGTNACC	1 cut(s)	661
BstF5I	GGATG	8 cut(s)	97, 873, 1218, 1299, 1384, 1489, 1584, 1730
BstFNI	CGCG	2 cut(s)	253, 523
BstH2I	RGCGCY	2 cut(s)	163, 1435
BstHHI	GCGC	2 cut(s)	162, 1434
BstMAI	GTCTC	4 cut(s)	36, 185, 1272, 1557
BstMCI	CGRYCG	1 cut(s)	647
BstMWI	GCNNNNNNNGC	6 cut(s)	81, 157, 565, 619, 628, 1440
BstNI	CCWGG	4 cut(s)	22, 305, 389, 1659
BstPAI	GACNNNNGTC	1 cut(s)	239
BstPI	GGTNACC	1 cut(s)	661
BstSFI	CTRYAG	2 cut(s)	1137, 1351
BstUI	CGCG	2 cut(s)	253, 523
BstV1I	GCAGC	7 cut(s)	107, 135, 225, 485, 1337, 1373, 1975
BstX2I	RGATCY	3 cut(s)	319, 1074, 1447
BstYI	RGATCY	3 cut(s)	319, 1074, 1447
BstZI	CGGCCG	1 cut(s)	644
Bsu36I	CCTNAGG	1 cut(s)	2013
BsuRI	GGCC	8 cut(s)	303, 392, 440, 646, 725, 1620, 1716, 1773
BtgI	CCRYGG	2 cut(s)	943, 1749
BtgZI	GCGATG	2 cut(s)	325, 784
BtsCI	GGATG	8 cut(s)	97, 873, 1218, 1299, 1384, 1489, 1584, 1730
BtsIMutI	CAGTG	3 cut(s)	484, 890, 1005
Cac8I	GCNNGC	3 cut(s)	82, 465, 1186
CfoI	GCGC	2 cut(s)	162, 1434
Cfr10I	RCCGGY	2 cut(s)	167, 1971
Cfr13I	GGNCC	6 cut(s)	202, 234, 439, 517, 1754, 2017
Cfr9I	CCCGGG	2 cut(s)	183, 237
CseI	GACGC	5 cut(s)	351, 434, 1608, 1787, 1898
CsiI	ACCWGGT	1 cut(s)	1657
Csp6I	GTAC	2 cut(s)	1463, 1816
CviQI	GTAC	2 cut(s)	1463, 1816
DdeI	CTNAG	8 cut(s)	87, 597, 632, 1622, 1636, 1838, 1929, 2013
DraI	TTTAAA	1 cut(s)	1101
DraIII	CACNNNGTG	1 cut(s)	860
DrdI	GACNNNNNNGTC	1 cut(s)	578
DseDI	GACNNNNNNGTC	1 cut(s)	578
EaeI	YGGCCR	2 cut(s)	644, 723
EagI	CGGCCG	1 cut(s)	644
Eam1104I	CTCTTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	332
EciI	GGCGGA	3 cut(s)	154, 1688, 1723
EclXI	CGGCCG	1 cut(s)	644
Eco130I	CCWWGG	5 cut(s)	699, 943, 1108, 1536, 1749
Eco147I	AGGCCT	1 cut(s)	1620
Eco31I	GGTCTC	2 cut(s)	185, 1557
Eco47I	GGWCC	5 cut(s)	202, 234, 517, 1754, 2017
Eco47III	AGCGCT	1 cut(s)	161
Eco52I	CGGCCG	1 cut(s)	644
Eco57I	CTGAAG	2 cut(s)	437, 978
Eco72I	CACGTG	4 cut(s)	299, 417, 436, 1064
Eco81I	CCTNAGG	1 cut(s)	2013
Eco88I	CYCGRG	2 cut(s)	183, 237
Eco91I	GGTNACC	1 cut(s)	661
EcoO109I	RGGNCCY	2 cut(s)	517, 1754
EcoO65I	GGTNACC	1 cut(s)	661
EcoRII	CCWGG	4 cut(s)	20, 303, 387, 1657
EcoT14I	CCWWGG	5 cut(s)	699, 943, 1108, 1536, 1749
EcoT22I	ATGCAT	2 cut(s)	875, 1299
ErhI	CCWWGG	5 cut(s)	699, 943, 1108, 1536, 1749
Esp3I	CGTCTC	1 cut(s)	36
FaqI	GGGAC	4 cut(s)	530, 1436, 1688, 1767
FauI	CCCGC	6 cut(s)	85, 125, 258, 494, 528, 1177
FauNDI	CATATG	3 cut(s)	763, 1505, 2022
FblI	GTMKAC	2 cut(s)	705, 1303
Fnu4HI	GCNGC	9 cut(s)	121, 149, 214, 499, 1313, 1351, 1362, 1717, 1989
FokI	GGATG	8 cut(s)	84, 860, 1205, 1306, 1391, 1496, 1591, 1717
Fsp4HI	GCNGC	9 cut(s)	121, 149, 214, 499, 1313, 1351, 1362, 1717, 1989
FspBI	CTAG	5 cut(s)	1109, 1445, 1514, 1652, 2029
GlaI	GCGC	2 cut(s)	161, 1433
GluI	GCNGC	9 cut(s)	121, 149, 214, 499, 1313, 1351, 1362, 1717, 1989
GsaI	CCCAGC	1 cut(s)	148
GsuI	CTGGAG	2 cut(s)	4, 1810
HaeII	RGCGCY	2 cut(s)	163, 1435
HaeIII	GGCC	8 cut(s)	303, 392, 440, 646, 725, 1620, 1716, 1773
HapII	CCGG	7 cut(s)	68, 101, 168, 184, 232, 238, 1972
HgaI	GACGC	5 cut(s)	351, 434, 1608, 1787, 1898
HhaI	GCGC	2 cut(s)	162, 1434
Hin1I	GRCGYC	5 cut(s)	362, 381, 426, 573, 1909
Hin6I	GCGC	2 cut(s)	160, 1432
HinP1I	GCGC	2 cut(s)	160, 1432
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	3 cut(s)	47, 482, 1413
HpaII	CCGG	7 cut(s)	68, 101, 168, 184, 232, 238, 1972
HphI	GGTGA	6 cut(s)	376, 502, 673, 685, 1154, 1553
Hpy166II	GTNNAC	4 cut(s)	693, 706, 1304, 1523
Hpy188I	TCNGA	5 cut(s)	228, 600, 1418, 1804, 1841
Hpy188III	TCNNGA	7 cut(s)	422, 956, 1277, 1406, 1456, 1496, 2015
Hpy8I	GTNNAC	4 cut(s)	693, 706, 1304, 1523
Hpy99I	CGWCG	3 cut(s)	202, 575, 1781
HpyAV	CCTTC	8 cut(s)	403, 688, 1049, 1413, 1453, 1553, 1675, 1730
HpyCH4III	ACNGT	5 cut(s)	281, 406, 667, 885, 1308
HpyF10VI	GCNNNNNNNGC	6 cut(s)	81, 157, 565, 619, 628, 1440
HpyF3I	CTNAG	8 cut(s)	87, 597, 632, 1622, 1636, 1838, 1929, 2013
Hsp92I	GRCGYC	5 cut(s)	362, 381, 426, 573, 1909
HspAI	GCGC	2 cut(s)	160, 1432
KflI	GGGWCCC	1 cut(s)	517
KpnI	GGTACC	1 cut(s)	1466
LguI	GCTCTTC	1 cut(s)	332
LmnI	GCTCC	3 cut(s)	157, 167, 1118
Lsp1109I	GCAGC	7 cut(s)	107, 135, 225, 485, 1337, 1373, 1975
LweI	GCATC	4 cut(s)	882, 1284, 1306, 1324
MabI	ACCWGGT	1 cut(s)	1657
MaeI	CTAG	5 cut(s)	1109, 1445, 1514, 1652, 2029
MaeIII	GTNAC	9 cut(s)	6, 125, 382, 400, 661, 742, 749, 818, 1142
MbiI	CCGCTC	1 cut(s)	325
MboII	GAAGA	5 cut(s)	165, 319, 748, 1267, 1781
MflI	RGATCY	3 cut(s)	319, 1074, 1447
MhlI	GDGCHC	1 cut(s)	353
MlsI	TGGCCA	1 cut(s)	725
MluNI	TGGCCA	1 cut(s)	725
MlyI	GAGTC	3 cut(s)	41, 491, 1407
MmeI	TCCRAC	3 cut(s)	808, 1461, 1964
Mox20I	TGGCCA	1 cut(s)	725
Mph1103I	ATGCAT	2 cut(s)	875, 1299
MscI	TGGCCA	1 cut(s)	725
MseI	TTAA	6 cut(s)	792, 809, 897, 963, 1100, 1977
MslI	CAYNNNNRTG	2 cut(s)	1646, 1748
Msp20I	TGGCCA	1 cut(s)	725
MspA1I	CMGCKG	2 cut(s)	120, 148
MspI	CCGG	7 cut(s)	68, 101, 168, 184, 232, 238, 1972
Mva1269I	GAATGC	2 cut(s)	77, 1234
MvaI	CCWGG	4 cut(s)	22, 305, 389, 1659
MvnI	CGCG	2 cut(s)	253, 523
MwoI	GCNNNNNNNGC	6 cut(s)	81, 157, 565, 619, 628, 1440
NciI	CCSGG	6 cut(s)	68, 184, 185, 232, 238, 239
NcoI	CCATGG	2 cut(s)	943, 1749
NdeI	CATATG	3 cut(s)	763, 1505, 2022
NmuCI	GTSAC	8 cut(s)	6, 125, 382, 400, 661, 742, 818, 1142
NsiI	ATGCAT	2 cut(s)	875, 1299
OliI	CACNNNNGTG	1 cut(s)	1646
PceI	AGGCCT	1 cut(s)	1620
PciSI	GCTCTTC	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	3 cut(s)	359, 432, 1606
PctI	GAATGC	2 cut(s)	77, 1234
PflFI	GACNNNGTC	1 cut(s)	1568
PflMI	CCANNNNNTGG	3 cut(s)	1092, 1480, 1579
PkrI	GCNGC	9 cut(s)	122, 150, 215, 500, 1314, 1352, 1363, 1718, 1990
PleI	GAGTC	3 cut(s)	41, 490, 1407
PmaCI	CACGTG	4 cut(s)	299, 417, 436, 1064
PmlI	CACGTG	4 cut(s)	299, 417, 436, 1064
PpsI	GAGTC	3 cut(s)	41, 490, 1407
Ppu21I	YACGTR	7 cut(s)	265, 299, 400, 417, 436, 472, 1064
PpuMI	RGGWCCY	2 cut(s)	517, 1754
PshAI	GACNNNNGTC	1 cut(s)	239
Psp5II	RGGWCCY	2 cut(s)	517, 1754
Psp6I	CCWGG	4 cut(s)	20, 303, 387, 1657
PspCI	CACGTG	4 cut(s)	299, 417, 436, 1064
PspEI	GGTNACC	1 cut(s)	661
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	4 cut(s)	20, 303, 387, 1657
PspPI	GGNCC	6 cut(s)	202, 234, 439, 517, 1754, 2017
PspPPI	RGGWCCY	2 cut(s)	517, 1754
PstI	CTGCAG	1 cut(s)	1355
PsuI	RGATCY	3 cut(s)	319, 1074, 1447
PsyI	GACNNNGTC	1 cut(s)	1568
PvuII	CAGCTG	1 cut(s)	148
RsaI	GTAC	2 cut(s)	1464, 1817
RsaNI	GTAC	2 cut(s)	1463, 1816
RseI	CAYNNNNRTG	2 cut(s)	1646, 1748
SapI	GCTCTTC	1 cut(s)	332
SaqAI	TTAA	6 cut(s)	792, 809, 897, 963, 1100, 1977
SatI	GCNGC	9 cut(s)	121, 149, 214, 499, 1313, 1351, 1362, 1717, 1989
Sau96I	GGNCC	6 cut(s)	202, 234, 439, 517, 1754, 2017
SchI	GAGTC	3 cut(s)	41, 491, 1407
SduI	GDGCHC	1 cut(s)	353
SexAI	ACCWGGT	1 cut(s)	1657
SfaNI	GCATC	4 cut(s)	882, 1284, 1306, 1324
SfcI	CTRYAG	2 cut(s)	1137, 1351
SinI	GGWCC	5 cut(s)	202, 234, 517, 1754, 2017
SmaI	CCCGGG	2 cut(s)	185, 239
SmiMI	CAYNNNNRTG	2 cut(s)	1646, 1748
SmlI	CTYRAG	2 cut(s)	925, 1189
SmoI	CTYRAG	2 cut(s)	925, 1189
SseBI	AGGCCT	1 cut(s)	1620
SspI	AATATT	1 cut(s)	936
SspMI	CTAG	5 cut(s)	1109, 1445, 1514, 1652, 2029
StuI	AGGCCT	1 cut(s)	1620
StyI	CCWWGG	5 cut(s)	699, 943, 1108, 1536, 1749
TaaI	ACNGT	5 cut(s)	281, 406, 667, 885, 1308
TaqI	TCGA	8 cut(s)	26, 246, 485, 570, 1238, 1276, 1336, 1776
TauI	GCSGC	2 cut(s)	1315, 1719
Tru1I	TTAA	6 cut(s)	792, 809, 897, 963, 1100, 1977
Tru9I	TTAA	6 cut(s)	792, 809, 897, 963, 1100, 1977
TscAI	CASTG	3 cut(s)	484, 890, 1012
TseFI	GTSAC	8 cut(s)	6, 125, 382, 400, 661, 742, 818, 1142
TseI	GCWGC	7 cut(s)	120, 148, 213, 498, 1350, 1361, 1988
Tsp45I	GTSAC	8 cut(s)	6, 125, 382, 400, 661, 742, 818, 1142
TspDTI	ATGAA	2 cut(s)	560, 1583
TspGWI	ACGGA	5 cut(s)	54, 215, 1035, 1508, 1858
TspMI	CCCGGG	2 cut(s)	183, 237
TspRI	CASTG	3 cut(s)	484, 890, 1012
Tth111I	GACNNNGTC	1 cut(s)	1568
Van91I	CCANNNNNTGG	3 cut(s)	1092, 1480, 1579
VpaK11BI	GGWCC	5 cut(s)	202, 234, 517, 1754, 2017
XapI	RAATTY	6 cut(s)	834, 949, 969, 1010, 1023, 1820
XcmI	CCANNNNNNNNNTGG	3 cut(s)	484, 1481, 1953
XmaI	CCCGGG	2 cut(s)	183, 237
XmaJI	CCTAGG	1 cut(s)	1108
XmiI	GTMKAC	2 cut(s)	705, 1303
XspI	CTAG	5 cut(s)	1109, 1445, 1514, 1652, 2029
ZraI	GACGTC	2 cut(s)	382, 574
Zsp2I	ATGCAT	2 cut(s)	875, 1299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.