Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003871

Physical Location & Seq

Genomic Coordinates Reverse (-)

5835387 .. 5839752

Gene Structure 4366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00284140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1581 bp

ATGTCGTCACCATCGCACTCCAGGTGGAATAATGGCAATGGAGACGACTCATTTGAGTTTAGTTCCCCGGAATGCTATGCTTGCACTCAGGCGGGTCTTCCGGTGTTTCACTCCACCCGCTGCCGTGACCCGATCCACCATTCCCAGCTGCAATGGGAGCGCTCCGCCGGTTCTTCTTTGACCCGGGTGGAGACCCCGACGGACCTCAAATGCAGCCCCACCGACCTGACCCGGACCCGGGTCATCGACCCGCGTAGCAACTACGTGAAAAGGTTGAACCGTGTCGTCCTCATGGCACGTGGCCTGGCTGTCGCCGTGGATCCGCTCTTCCTCTACGTCTTCGCTTTGTGCAAGAGTGGGGCCTCCTGCTTCTACATGGACGTCACCCTGGCGTTCTACGTGACCGTCGTTCGCACGTGTCTGGACGCCTTACACCTGGCCCACATTTTGCTTCAGTTCAAGCTTGCATACGTGTCCAGTGAGTCGATGGTTATTGGCTGCGGGAAGCTCGTGTGGGACCCGCGAGAGATTGCGTGGCACTACATGAGGTCCTTCAGGGGTTCTGGCTTGACGTCTTTGTCATTCTACCTATTCCTCAGATTGTTGGAGGAATTTGCTAACAAAATTCCAAAGATAAAGGCAATGTGCTTTGATGAGGACACTGAATTTGGCTACGGAATTTACCAGCCTATCCTTCTTGTCTATAATGGCAATACACGCGCCGTTAGGATCCTTTATCCCATTTACTGGGGTTTAAATAACCTAGGCTCCTTTGCCAACAATCTAACTCCTACAAGTGACTGGCTGGAACTGATATTCTCTTGCTGTCTGTGTCTGGCGGGCTTGAGCCTCTTTATTACTTTACTTGGAAATATCCAGTTTTTTCTGCATTCGATCATGTCAAACAAGAAGAAAATGCAGTTGAAATATCGAGACATGGACTGGTGGATGCATCGTAGACAGTTGCCGCATCATTTGAGAAAGAGAGTTCGGCATTTTCAACGCTGCAGTTGGGCAGCAATGCAAGGACTGGATGAGATTGATTTGATCCAAAACTTTCCTGATGGACTCCGAAGGGACATCAAGCGCCATCTTTGCCTAGATCTTGTCTTGAAGGTACCGCTATTCCACAAGTTGGATGATGTGATTCTTGACAACATATGTGATCTAGTCCGTCCACTAATCTACTCCAAGGGTGAAAAGATAATTAGAGAAGGAGACCCTGTCCAAAGGATGGTGTTCTTGGTTCGTGGACGCATAAAACGTAGTCAAGGCCTGAGCAAAGGGTTCTTAGCCACGAGTGTGCTAGAACCTGGTGCCTTCTTTGGGGACGAGCTTCTCTCGTGGTGCCTCCGCCGTCCATTTTTAGGCCGCCTTCCTCCCTCATCCGCCACATTCACTACCATGGGACCTGTTGAAGCATTTGGCCTCGACGCAGAGTTTCTTCGCTACATTTCCGATCATTTTCGGGAGAGGACTAAGGGTAGTCCAACACCAATACAAAATTGGGATATTGAGAACCGGCTTAAAATGTATGCTGCCATGTTCTTGTCAGTAAAGCCTCAGGACCATATGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005215 GO:0005216 GO:0005217 GO:0005221 GO:0005222 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005262 GO:0005267 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007263 GO:0008150 GO:0008219 GO:0008324 GO:0009626 GO:0009987 GO:0012501 GO:0015075 GO:0015077 GO:0015079 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0019932 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031224 GO:0031226 GO:0033554 GO:0034050 GO:0034220 GO:0035556 GO:0042391 GO:0043855 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0065008 GO:0070509 GO:0070588 GO:0070838 GO:0071804 GO:0071805 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0099094

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

526

Amino Acids

60.56

Weight (kDa)

9.02

Isoelectric Point (pI)

53.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	396 - 483	7.6e-08	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15410 AT5G15410
fragaria_vesca	FvH4_6g47520 FvH4_6g47520 FvH4_7g26890
malus_domestica	MD07G1248200.v1.1 MD09G1061000.v1.1 MD17G1056400.v1.1
prunus_persica	Prupe.2G272100_v2.0.a1 Prupe.3G259100_v2.0.a1
pyrus_communis	pycom07g22190 pycom111g05130 pycom17g05550
rosa_chinensis	RchiOBHm_Chr1g0373561 RchiOBHm_Chr2g0166581
rosa_laevigata	RLG00000021630 RLG00000026815
rosa_multiflora	Rmu_sc0002860.1_g000003 Rmu_sc0008222.1_g000009
rosa_roxburghii	Rroxscaffold_2G00084740 Rroxscaffold_4G00284140
rosa_rugosa	Rorug01G0378300 Rorug02G0524300 Rorug02G0524400
rosa_samantha	Rh1AG387700 Rh1BG352000 Rh1CG364700 Rh1DG382400 Rh2AG590200 Rh2BG602300 Rh2CG573000 Rh2DG612900
rosa_wichuraiana	Rw1G034770 Rw2G049200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	577
AatII	GACGTC	2 cut(s)	384, 575
Acc65I	GGTACC	1 cut(s)	1117
AccB1I	GGYRCC	3 cut(s)	1117, 1316, 1347
AccB7I	CCANNNNNTGG	3 cut(s)	747, 1135, 1234
AccBSI	CCGCTC	1 cut(s)	325
AccI	GTMKAC	1 cut(s)	958
AccII	CGCG	3 cut(s)	253, 523, 720
AclWI	GGATC	6 cut(s)	127, 314, 327, 724, 737, 1042
AcsI	RAATTY	4 cut(s)	611, 624, 665, 678
AcuI	CTGAAG	2 cut(s)	437, 538
AcvI	CACGTG	2 cut(s)	299, 417
AcyI	GRCGYC	3 cut(s)	381, 426, 572
AfaI	GTAC	1 cut(s)	1119
AfeI	AGCGCT	1 cut(s)	161
AfiI	CCNNNNNNNGG	7 cut(s)	237, 238, 747, 1135, 1234, 1326, 1367
AflIII	ACRYGT	2 cut(s)	416, 471
AgsI	TTSAA	6 cut(s)	277, 460, 925, 1001, 1114, 1418
AjnI	CCWGG	5 cut(s)	20, 303, 387, 435, 1312
AleI	CACNNNNGTG	1 cut(s)	1301
AluBI	AGCT	4 cut(s)	148, 463, 508, 1336
AluI	AGCT	4 cut(s)	148, 463, 508, 1336
Alw26I	GTCTC	4 cut(s)	36, 185, 927, 1212
AlwI	GGATC	6 cut(s)	127, 314, 327, 724, 737, 1042
Ama87I	CYCGRG	2 cut(s)	183, 237
Aor51HI	AGCGCT	1 cut(s)	161
AoxI	GGCC	6 cut(s)	301, 360, 438, 1273, 1369, 1426
ApeKI	GCWGC	7 cut(s)	120, 148, 213, 498, 1005, 1016, 1538
ApoI	RAATTY	4 cut(s)	611, 624, 665, 678
ArsI	GACNNNNNNTTYG	4 cut(s)	35, 67, 650, 682
Asp718I	GGTACC	1 cut(s)	1117
AspA2I	CCTAGG	1 cut(s)	763
AspLEI	GCGC	3 cut(s)	162, 722, 1089
AspS9I	GGNCC	8 cut(s)	202, 234, 360, 439, 517, 549, 1409, 1567
AsuC2I	CCSGG	6 cut(s)	68, 184, 185, 232, 238, 239
AsuHPI	GGTGA	2 cut(s)	376, 1208
AvaI	CYCGRG	2 cut(s)	183, 237
AvaII	GGWCC	6 cut(s)	202, 234, 517, 549, 1409, 1567
AvrII	CCTAGG	1 cut(s)	763
AxyI	CCTNAGG	1 cut(s)	1563
BamHI	GGATCC	2 cut(s)	319, 729
BanI	GGYRCC	3 cut(s)	1117, 1316, 1347
BauI	CACGAG	3 cut(s)	509, 1297, 1342
BbrPI	CACGTG	2 cut(s)	299, 417
BbsI	GAAGAC	2 cut(s)	89, 331
BbvI	GCAGC	7 cut(s)	107, 135, 225, 485, 992, 1028, 1525
BccI	CCATC	5 cut(s)	19, 481, 1058, 1098, 1228
BceAI	ACGGC	4 cut(s)	108, 299, 707, 1341
BciT130I	CCWGG	5 cut(s)	22, 305, 389, 437, 1314
BcnI	CCSGG	6 cut(s)	68, 184, 185, 232, 238, 239
BcoDI	GTCTC	4 cut(s)	36, 185, 927, 1212
BfaI	CTAG	5 cut(s)	764, 1100, 1169, 1307, 1579
BfmI	CTRYAG	1 cut(s)	1006
BfoI	RGCGCY	2 cut(s)	163, 1090
BglII	AGATCT	1 cut(s)	1102
BisI	GCNGC	9 cut(s)	121, 149, 214, 499, 968, 1006, 1017, 1372, 1539
BlnI	CCTAGG	1 cut(s)	763
BlsI	GCNGC	9 cut(s)	122, 150, 215, 500, 969, 1007, 1018, 1373, 1540
Bme18I	GGWCC	6 cut(s)	202, 234, 517, 549, 1409, 1567
BmeT110I	CYCGRG	2 cut(s)	183, 237
BmgT120I	GGNCC	8 cut(s)	202, 234, 360, 439, 517, 549, 1409, 1567
BmrI	ACTGGG	1 cut(s)	757
BmsI	GCATC	3 cut(s)	939, 961, 979
BmuI	ACTGGG	1 cut(s)	757
BoxI	GACNNNNGTC	1 cut(s)	239
BpiI	GAAGAC	2 cut(s)	89, 331
BplI	GAGNNNNNCTC	2 cut(s)	1325, 1357
BpmI	CTGGAG	1 cut(s)	4
Bpu10I	CCTNAGC	1 cut(s)	1277
BpuEI	CTTGAG	1 cut(s)	865
BpuMI	CCSGG	6 cut(s)	68, 184, 185, 232, 238, 239
BsaAI	YACGTR	5 cut(s)	265, 299, 400, 417, 472
BsaHI	GRCGYC	3 cut(s)	381, 426, 572
BsaI	GGTCTC	2 cut(s)	185, 1212
BsaJI	CCNNGG	8 cut(s)	66, 183, 237, 315, 387, 763, 1191, 1404
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	4 cut(s)	752, 782, 1209, 1239
Bsc4I	CCNNNNNNNGG	7 cut(s)	237, 238, 747, 1135, 1234, 1326, 1367
Bse118I	RCCGGY	2 cut(s)	167, 1521
Bse1I	ACTGG	6 cut(s)	477, 752, 806, 877, 947, 1035
Bse21I	CCTNAGG	1 cut(s)	1563
Bse3DI	GCAATG	4 cut(s)	43, 158, 648, 1026
BseBI	CCWGG	5 cut(s)	22, 305, 389, 437, 1314
BseDI	CCNNGG	8 cut(s)	66, 183, 237, 315, 387, 763, 1191, 1404
BseGI	GGATG	5 cut(s)	954, 1039, 1144, 1239, 1385
BseLI	CCNNNNNNNGG	7 cut(s)	237, 238, 747, 1135, 1234, 1326, 1367
BseMI	GCAATG	4 cut(s)	43, 158, 648, 1026
BseMII	CTCAG	4 cut(s)	101, 610, 1268, 1577
BseNI	ACTGG	6 cut(s)	477, 752, 806, 877, 947, 1035
BseXI	GCAGC	7 cut(s)	107, 135, 225, 485, 992, 1028, 1525
BseYI	CCCAGC	1 cut(s)	144
Bsh1236I	CGCG	3 cut(s)	253, 523, 720
BshFI	GGCC	6 cut(s)	303, 362, 440, 1275, 1371, 1428
BshNI	GGYRCC	3 cut(s)	1117, 1316, 1347
BsiHKCI	CYCGRG	2 cut(s)	183, 237
BsiSI	CCGG	7 cut(s)	68, 101, 168, 184, 232, 238, 1522
BslFI	GGGAC	4 cut(s)	530, 1091, 1343, 1422
BslI	CCNNNNNNNGG	7 cut(s)	237, 238, 747, 1135, 1234, 1326, 1367
BsmAI	GTCTC	4 cut(s)	36, 185, 927, 1212
BsmBI	CGTCTC	1 cut(s)	36
BsmFI	GGGAC	4 cut(s)	530, 1091, 1343, 1422
BsmI	GAATGC	2 cut(s)	77, 889
BsnI	GGCC	6 cut(s)	303, 362, 440, 1275, 1371, 1428
Bso31I	GGTCTC	2 cut(s)	185, 1212
BsoBI	CYCGRG	2 cut(s)	183, 237
Bsp143I	GATC	8 cut(s)	132, 319, 729, 894, 1047, 1102, 1165, 1459
Bsp19I	CCATGG	1 cut(s)	1404
BspANI	GGCC	6 cut(s)	303, 362, 440, 1275, 1371, 1428
BspCNI	CTCAG	4 cut(s)	100, 609, 1269, 1576
BspFNI	CGCG	3 cut(s)	253, 523, 720
BspMAI	CTGCAG	1 cut(s)	1010
BspPI	GGATC	6 cut(s)	127, 314, 327, 724, 737, 1042
BspQI	GCTCTTC	1 cut(s)	332
BspT107I	GGYRCC	3 cut(s)	1117, 1316, 1347
BspTNI	GGTCTC	2 cut(s)	185, 1212
BsrBI	CCGCTC	1 cut(s)	325
BsrDI	GCAATG	4 cut(s)	43, 158, 648, 1026
BsrFI	RCCGGY	2 cut(s)	167, 1521
BsrI	ACTGG	6 cut(s)	477, 752, 806, 877, 947, 1035
BssAI	RCCGGY	2 cut(s)	167, 1521
BssECI	CCNNGG	8 cut(s)	66, 183, 237, 315, 387, 763, 1191, 1404
BssMI	GATC	8 cut(s)	132, 319, 729, 894, 1047, 1102, 1165, 1459
BssNI	GRCGYC	3 cut(s)	381, 426, 572
BssSI	CACGAG	3 cut(s)	509, 1297, 1342
BssT1I	CCWWGG	3 cut(s)	763, 1191, 1404
Bst2BI	CACGAG	3 cut(s)	509, 1297, 1342
Bst2UI	CCWGG	5 cut(s)	22, 305, 389, 437, 1314
Bst4CI	ACNGT	3 cut(s)	281, 406, 963
Bst6I	CTCTTC	1 cut(s)	332
BstACI	GRCGYC	3 cut(s)	381, 426, 572
BstBAI	YACGTR	5 cut(s)	265, 299, 400, 417, 472
BstC8I	GCNNGC	3 cut(s)	82, 465, 841
BstDEI	CTNAG	6 cut(s)	87, 596, 1277, 1291, 1479, 1563
BstDSI	CCRYGG	2 cut(s)	315, 1404
BstF5I	GGATG	5 cut(s)	954, 1039, 1144, 1239, 1385
BstFNI	CGCG	3 cut(s)	253, 523, 720
BstH2I	RGCGCY	2 cut(s)	163, 1090
BstHHI	GCGC	3 cut(s)	162, 722, 1089
BstKTI	GATC	8 cut(s)	135, 322, 732, 897, 1050, 1105, 1168, 1462
BstMAI	GTCTC	4 cut(s)	36, 185, 927, 1212
BstMBI	GATC	8 cut(s)	132, 319, 729, 894, 1047, 1102, 1165, 1459
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 157, 717, 1095
BstNI	CCWGG	5 cut(s)	22, 305, 389, 437, 1314
BstPAI	GACNNNNGTC	1 cut(s)	239
BstSFI	CTRYAG	1 cut(s)	1006
BstUI	CGCG	3 cut(s)	253, 523, 720
BstV1I	GCAGC	7 cut(s)	107, 135, 225, 485, 992, 1028, 1525
BstV2I	GAAGAC	2 cut(s)	89, 331
BstX2I	RGATCY	3 cut(s)	319, 729, 1102
BstYI	RGATCY	3 cut(s)	319, 729, 1102
Bsu36I	CCTNAGG	1 cut(s)	1563
BsuRI	GGCC	6 cut(s)	303, 362, 440, 1275, 1371, 1428
BtgI	CCRYGG	2 cut(s)	315, 1404
BtsCI	GGATG	5 cut(s)	954, 1039, 1144, 1239, 1385
BtsIMutI	CAGTG	2 cut(s)	484, 660
Cac8I	GCNNGC	3 cut(s)	82, 465, 841
CfoI	GCGC	3 cut(s)	162, 722, 1089
Cfr10I	RCCGGY	2 cut(s)	167, 1521
Cfr13I	GGNCC	8 cut(s)	202, 234, 360, 439, 517, 549, 1409, 1567
Cfr9I	CCCGGG	2 cut(s)	183, 237
CseI	GACGC	3 cut(s)	434, 1263, 1442
CsiI	ACCWGGT	1 cut(s)	1312
Csp6I	GTAC	1 cut(s)	1118
CviAII	CATG	7 cut(s)	292, 376, 544, 898, 937, 1405, 1543
CviQI	GTAC	1 cut(s)	1118
DdeI	CTNAG	6 cut(s)	87, 596, 1277, 1291, 1479, 1563
DpnI	GATC	8 cut(s)	134, 321, 731, 896, 1049, 1104, 1167, 1461
DpnII	GATC	8 cut(s)	132, 319, 729, 894, 1047, 1102, 1165, 1459
DraI	TTTAAA	1 cut(s)	756
DrdI	GACNNNNNNGTC	1 cut(s)	577
DseDI	GACNNNNNNGTC	1 cut(s)	577
Eam1104I	CTCTTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	332
EciI	GGCGGA	3 cut(s)	154, 1343, 1378
Eco130I	CCWWGG	3 cut(s)	763, 1191, 1404
Eco147I	AGGCCT	1 cut(s)	1275
Eco31I	GGTCTC	2 cut(s)	185, 1212
Eco47I	GGWCC	6 cut(s)	202, 234, 517, 549, 1409, 1567
Eco47III	AGCGCT	1 cut(s)	161
Eco57I	CTGAAG	2 cut(s)	437, 538
Eco72I	CACGTG	2 cut(s)	299, 417
Eco81I	CCTNAGG	1 cut(s)	1563
Eco88I	CYCGRG	2 cut(s)	183, 237
EcoO109I	RGGNCCY	4 cut(s)	360, 517, 549, 1409
EcoRII	CCWGG	5 cut(s)	20, 303, 387, 435, 1312
EcoT14I	CCWWGG	3 cut(s)	763, 1191, 1404
EcoT22I	ATGCAT	1 cut(s)	954
ErhI	CCWWGG	3 cut(s)	763, 1191, 1404
Esp3I	CGTCTC	1 cut(s)	36
FaeI	CATG	7 cut(s)	295, 379, 547, 901, 940, 1408, 1546
FaqI	GGGAC	4 cut(s)	530, 1091, 1343, 1422
FatI	CATG	7 cut(s)	291, 375, 543, 897, 936, 1404, 1542
FauI	CCCGC	6 cut(s)	85, 125, 258, 494, 528, 832
FauNDI	CATATG	2 cut(s)	1160, 1572
FblI	GTMKAC	1 cut(s)	958
Fnu4HI	GCNGC	9 cut(s)	121, 149, 214, 499, 968, 1006, 1017, 1372, 1539
FokI	GGATG	5 cut(s)	961, 1046, 1151, 1246, 1372
Fsp4HI	GCNGC	9 cut(s)	121, 149, 214, 499, 968, 1006, 1017, 1372, 1539
FspBI	CTAG	5 cut(s)	764, 1100, 1169, 1307, 1579
GlaI	GCGC	3 cut(s)	161, 721, 1088
GluI	GCNGC	9 cut(s)	121, 149, 214, 499, 968, 1006, 1017, 1372, 1539
GsaI	CCCAGC	1 cut(s)	148
GsuI	CTGGAG	1 cut(s)	4
HaeII	RGCGCY	2 cut(s)	163, 1090
HaeIII	GGCC	6 cut(s)	303, 362, 440, 1275, 1371, 1428
HapII	CCGG	7 cut(s)	68, 101, 168, 184, 232, 238, 1522
HgaI	GACGC	3 cut(s)	434, 1263, 1442
HhaI	GCGC	3 cut(s)	162, 722, 1089
Hin1I	GRCGYC	3 cut(s)	381, 426, 572
Hin1II	CATG	7 cut(s)	295, 379, 547, 901, 940, 1408, 1546
Hin6I	GCGC	3 cut(s)	160, 720, 1087
HinP1I	GCGC	3 cut(s)	160, 720, 1087
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	4 cut(s)	47, 482, 1068, 1147
HpaII	CCGG	7 cut(s)	68, 101, 168, 184, 232, 238, 1522
HphI	GGTGA	2 cut(s)	376, 1208
Hpy166II	GTNNAC	3 cut(s)	959, 1178, 1253
Hpy188I	TCNGA	3 cut(s)	599, 1073, 1459
Hpy188III	TCNNGA	7 cut(s)	422, 932, 1061, 1111, 1151, 1469, 1565
Hpy8I	GTNNAC	3 cut(s)	959, 1178, 1253
Hpy99I	CGWCG	3 cut(s)	202, 410, 1436
HpyAV	CCTTC	7 cut(s)	562, 704, 1068, 1108, 1208, 1330, 1385
HpyCH4III	ACNGT	3 cut(s)	281, 406, 963
HpyCH4IV	ACGT	9 cut(s)	264, 298, 336, 381, 399, 416, 471, 572, 1264
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 157, 717, 1095
HpyF3I	CTNAG	6 cut(s)	87, 596, 1277, 1291, 1479, 1563
HpySE526I	ACGT	9 cut(s)	264, 298, 336, 381, 399, 416, 471, 572, 1264
Hsp92I	GRCGYC	3 cut(s)	381, 426, 572
Hsp92II	CATG	7 cut(s)	295, 379, 547, 901, 940, 1408, 1546
HspAI	GCGC	3 cut(s)	160, 720, 1087
KflI	GGGWCCC	1 cut(s)	517
KpnI	GGTACC	1 cut(s)	1121
Kzo9I	GATC	8 cut(s)	132, 319, 729, 894, 1047, 1102, 1165, 1459
LguI	GCTCTTC	1 cut(s)	332
LmnI	GCTCC	3 cut(s)	157, 167, 773
Lsp1109I	GCAGC	7 cut(s)	107, 135, 225, 485, 992, 1028, 1525
LweI	GCATC	3 cut(s)	939, 961, 979
MabI	ACCWGGT	1 cut(s)	1312
MaeI	CTAG	5 cut(s)	764, 1100, 1169, 1307, 1579
MaeII	ACGT	9 cut(s)	264, 298, 336, 381, 399, 416, 471, 572, 1264
MaeIII	GTNAC	5 cut(s)	6, 125, 382, 400, 797
MalI	GATC	8 cut(s)	134, 321, 731, 896, 1049, 1104, 1167, 1461
MbiI	CCGCTC	1 cut(s)	325
MboI	GATC	8 cut(s)	132, 319, 729, 894, 1047, 1102, 1165, 1459
MboII	GAAGA	6 cut(s)	89, 165, 319, 331, 922, 1436
MflI	RGATCY	3 cut(s)	319, 729, 1102
MluCI	AATT	6 cut(s)	611, 624, 665, 678, 1206, 1504
MlyI	GAGTC	3 cut(s)	41, 491, 1062
MmeI	TCCRAC	3 cut(s)	585, 1116, 1514
Mph1103I	ATGCAT	1 cut(s)	954
MseI	TTAA	2 cut(s)	755, 1527
MslI	CAYNNNNRTG	2 cut(s)	1301, 1403
MspA1I	CMGCKG	2 cut(s)	120, 148
MspI	CCGG	7 cut(s)	68, 101, 168, 184, 232, 238, 1522
Mva1269I	GAATGC	2 cut(s)	77, 889
MvaI	CCWGG	5 cut(s)	22, 305, 389, 437, 1314
MvnI	CGCG	3 cut(s)	253, 523, 720
MwoI	GCNNNNNNNGC	4 cut(s)	81, 157, 717, 1095
NciI	CCSGG	6 cut(s)	68, 184, 185, 232, 238, 239
NcoI	CCATGG	1 cut(s)	1404
NdeI	CATATG	2 cut(s)	1160, 1572
NdeII	GATC	8 cut(s)	132, 319, 729, 894, 1047, 1102, 1165, 1459
NlaIII	CATG	7 cut(s)	295, 379, 547, 901, 940, 1408, 1546
NmuCI	GTSAC	5 cut(s)	6, 125, 382, 400, 797
NsiI	ATGCAT	1 cut(s)	954
OliI	CACNNNNGTG	1 cut(s)	1301
PceI	AGGCCT	1 cut(s)	1275
PciSI	GCTCTTC	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	2 cut(s)	405, 1261
PctI	GAATGC	2 cut(s)	77, 889
PfeI	GAWTC	1 cut(s)	1147
PflFI	GACNNNGTC	1 cut(s)	1223
PflMI	CCANNNNNTGG	3 cut(s)	747, 1135, 1234
PkrI	GCNGC	9 cut(s)	122, 150, 215, 500, 969, 1007, 1018, 1373, 1540
PleI	GAGTC	3 cut(s)	41, 490, 1062
PmaCI	CACGTG	2 cut(s)	299, 417
PmlI	CACGTG	2 cut(s)	299, 417
PpsI	GAGTC	3 cut(s)	41, 490, 1062
Ppu21I	YACGTR	5 cut(s)	265, 299, 400, 417, 472
PpuMI	RGGWCCY	3 cut(s)	517, 549, 1409
PshAI	GACNNNNGTC	1 cut(s)	239
Psp5II	RGGWCCY	3 cut(s)	517, 549, 1409
Psp6I	CCWGG	5 cut(s)	20, 303, 387, 435, 1312
PspCI	CACGTG	2 cut(s)	299, 417
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	5 cut(s)	20, 303, 387, 435, 1312
PspPI	GGNCC	8 cut(s)	202, 234, 360, 439, 517, 549, 1409, 1567
PspPPI	RGGWCCY	3 cut(s)	517, 549, 1409
PstI	CTGCAG	1 cut(s)	1010
PsuI	RGATCY	3 cut(s)	319, 729, 1102
PsyI	GACNNNGTC	1 cut(s)	1223
PvuII	CAGCTG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	1119
RsaNI	GTAC	1 cut(s)	1118
RseI	CAYNNNNRTG	2 cut(s)	1301, 1403
SapI	GCTCTTC	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	755, 1527
SatI	GCNGC	9 cut(s)	121, 149, 214, 499, 968, 1006, 1017, 1372, 1539
Sau3AI	GATC	8 cut(s)	132, 319, 729, 894, 1047, 1102, 1165, 1459
Sau96I	GGNCC	8 cut(s)	202, 234, 360, 439, 517, 549, 1409, 1567
SchI	GAGTC	3 cut(s)	41, 491, 1062
SexAI	ACCWGGT	1 cut(s)	1312
SfaNI	GCATC	3 cut(s)	939, 961, 979
SfcI	CTRYAG	1 cut(s)	1006
SinI	GGWCC	6 cut(s)	202, 234, 517, 549, 1409, 1567
SmaI	CCCGGG	2 cut(s)	185, 239
SmiMI	CAYNNNNRTG	2 cut(s)	1301, 1403
SmlI	CTYRAG	1 cut(s)	844
SmoI	CTYRAG	1 cut(s)	844
Sse9I	AATT	6 cut(s)	611, 624, 665, 678, 1206, 1504
SseBI	AGGCCT	1 cut(s)	1275
SspMI	CTAG	5 cut(s)	764, 1100, 1169, 1307, 1579
StuI	AGGCCT	1 cut(s)	1275
StyI	CCWWGG	3 cut(s)	763, 1191, 1404
TaaI	ACNGT	3 cut(s)	281, 406, 963
TaiI	ACGT	9 cut(s)	267, 301, 339, 384, 402, 419, 474, 575, 1267
TaqI	TCGA	5 cut(s)	246, 485, 893, 931, 1431
TasI	AATT	6 cut(s)	611, 624, 665, 678, 1206, 1504
TauI	GCSGC	2 cut(s)	970, 1374
TfiI	GAWTC	1 cut(s)	1147
Tru1I	TTAA	2 cut(s)	755, 1527
Tru9I	TTAA	2 cut(s)	755, 1527
TscAI	CASTG	2 cut(s)	484, 667
TseFI	GTSAC	5 cut(s)	6, 125, 382, 400, 797
TseI	GCWGC	7 cut(s)	120, 148, 213, 498, 1005, 1016, 1538
Tsp45I	GTSAC	5 cut(s)	6, 125, 382, 400, 797
TspGWI	ACGGA	3 cut(s)	215, 690, 1163
TspMI	CCCGGG	2 cut(s)	183, 237
TspRI	CASTG	2 cut(s)	484, 667
Tth111I	GACNNNGTC	1 cut(s)	1223
Van91I	CCANNNNNTGG	3 cut(s)	747, 1135, 1234
VpaK11BI	GGWCC	6 cut(s)	202, 234, 517, 549, 1409, 1567
XapI	RAATTY	4 cut(s)	611, 624, 665, 678
XcmI	CCANNNNNNNNNTGG	2 cut(s)	484, 1503
XmaI	CCCGGG	2 cut(s)	183, 237
XmaJI	CCTAGG	1 cut(s)	763
XmiI	GTMKAC	1 cut(s)	958
XspI	CTAG	5 cut(s)	764, 1100, 1169, 1307, 1579
ZraI	GACGTC	2 cut(s)	382, 573
Zsp2I	ATGCAT	1 cut(s)	954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.