Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003871

Physical Location & Seq

Genomic Coordinates Forward (+)

31736004 .. 31740913

Gene Structure 4910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1248200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2055 bp

ATGTCCTCCCCCTCAAGGTGGAACATCAACCCCAACAACAACACTAATGGCGGAATTACGAAGGCCTACGACAACGACGACGCAATCTTCAACTCAAAAGAATGCTACGCTTGCACTCAGGTCGGTGTCCCCGTCTTCCACTCCACCCGCTGCGACCCGATCCACCAGCCCCACCTCCAGTGGGAGCGCTCTGCCGGGTCCTCCATGACCCGAGTCCACACCCCCACAACCCACAACTGCGGCCCCCACGACCTGACCCGGACGCGCGCCATCGACCCACGTAGCCAAAACGTCAAAAGGTGGAACCGCGTCGTCCTCATGGCACGGGGCATGTCGTTGGCCGTAGATCCGCTCTTCTTTTACGTCATCGCGCTGAGCCAGCGCGGTGGGCCCTGTTTTTACATGGACGTGGCGCTGGCGCTCGTTGTGACTCTGGTGAGGACGTGTTTGGATGCGTTGCACCTGGCACACATCTTGCTTCAGTTTAAGTTGGCTTACGTGTCCAGTGAGTCGATGGTTATTGGCTGCGGGAAGCTCGTGTGGGACTCAGGTGAGATTGCGTGTCACTATATGCGGTCCCTCAGGGGGTTTTGGCTCGATGCCTTTGTCATTCTTCCAATTCCTCAGGCAGTAATTTGGTTAATTGTACCAAAACTGTTTATACAAGAACAGACTAGACTGATCATGACGACCCTTTTGCTAACCTTCTCGTTTCAGTTCATCCCCAAGCTCTACCACAGTGTTTACTTGGCCAAAAGACTCAAAAGGGTCACAGGTTACATATTTGCCTATGGCAACATTTGGTGGCGTTTTAAACTTAACATTATTGCCTACTTAACTGCCGCTCATATTGTTGGAGGATGTTGGTATGTCCTTGCAACACAACGTGTAATGTCGTGCTTCCAACAACAGTGTGACAGAAGTCTAAACTGCAATCTCTCTATCTATTGCTCCAAGGAAATATTTTCCAATGGAAAGTTTTCCGGTGGTAATGCATTCACAAAGATAAAGACATTGTGCTTGGATAAAGACACACCATTCAAGTATGGTATTTACCAGCCGCTACTTGATGTCTACGCCGGCAATACACTTGCTGTGAGGATCCTTTATCCCATATACTGGGGTTTAATTAATATCGGCTCCTTTGCCAACAACCTTACTCCGACAAGTGACTGGCGAGAACTGATATTCTCTTGCTTGTTGACACTAGCGGGCTTGGGGCTCTTTATTACATTAATTGGAAATATCCAGATATTTCTGCACATGATGATGGCAAATAAGAAAAAAATGCAGCTGAAATATCGAGACATGGAATGGTGGATGCAACGAAGGCAGTTGCCGTCTCATTTGAGAAAGAGAGCTCGCTATTTCCAGCGCCACAGTTGGGCTGCCATGCAAGGCCAAGATGAGCTTGAATTGATCCAACATTTCCCGGATGGCCTTCGCCGGGACATTAAGCGATACCTTTGCCTAGATCTTCTGAAGAAGGTACCGTTATTCCACAAGCTAGATGATGTTATTTTGGACAACATATGTGACCTTGTCCGGCCAACGGTCTACTCCAAGGGTGAAAAGGTAATTAGAGAAGGGGACCCAGTACAAAGAATGATGTTCGTAGTTCATGGACGAATAAAACGTAGCCAAGGCCTGAGCAAAGGGTTCCTAGCTACCAGTGTACTCGAACCGGGCAGTTTCTTTGGTGATGAACTTCTCTCATGGTGCCTTCGCCGCCCATTTCTCGGCCGCCTTCCTCCCTCCTCAGCAACATTTACTTGCCTGGAACCTATGGAAGCATTTGGTTTAGATGCAGATTGTCTCCGCTACATCACTGACCATTTTCGTTACAAGTTTTTGAATGAAGAACTCAGGTGGACGGCGAGGTTTTACTCATCGAATTGGAGAACATGGGCGGCGGTGATCATTCAACTTGCTTGGCGCCGGCATAGAATGAGGACGAAGGGTCTGGTGGTGCTGCAAAATGGGGACATCGAGAATCGGTTGAGGCATTACGCTGCCTTCTTTTTGTCATTGAAGCCGCATGATCATCTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005215 GO:0005216 GO:0005217 GO:0005221 GO:0005222 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005262 GO:0005267 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007263 GO:0008150 GO:0008219 GO:0008324 GO:0009626 GO:0009987 GO:0012501 GO:0015075 GO:0015077 GO:0015079 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0019932 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031224 GO:0031226 GO:0033554 GO:0034050 GO:0034220 GO:0035556 GO:0042391 GO:0043855 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0065008 GO:0070509 GO:0070588 GO:0070838 GO:0071804 GO:0071805 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0099094

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

685

Amino Acids

79.2

Weight (kDa)

9.52

Isoelectric Point (pI)

51.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	519 - 607	2.1e-08	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15410 AT5G15410
fragaria_vesca	FvH4_6g47520 FvH4_6g47520 FvH4_7g26890
malus_domestica	MD07G1248200.v1.1 MD09G1061000.v1.1 MD17G1056400.v1.1
prunus_persica	Prupe.2G272100_v2.0.a1 Prupe.3G259100_v2.0.a1
pyrus_communis	pycom07g22190 pycom111g05130 pycom17g05550
rosa_chinensis	RchiOBHm_Chr1g0373561 RchiOBHm_Chr2g0166581
rosa_laevigata	RLG00000021630 RLG00000026815
rosa_multiflora	Rmu_sc0002860.1_g000003 Rmu_sc0008222.1_g000009
rosa_roxburghii	Rroxscaffold_2G00084740 Rroxscaffold_4G00284140
rosa_rugosa	Rorug01G0378300 Rorug02G0524300 Rorug02G0524400
rosa_samantha	Rh1AG387700 Rh1BG352000 Rh1CG364700 Rh1DG382400 Rh2AG590200 Rh2BG602300 Rh2CG573000 Rh2DG612900
rosa_wichuraiana	Rw1G034770 Rw2G049200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1489
AccB1I	GGYRCC	3 cut(s)	1489, 1719, 1935
AccB7I	CCANNNNNTGG	1 cut(s)	1119
AccBSI	CCGCTC	2 cut(s)	352, 845
AccI	GTMKAC	2 cut(s)	1074, 1557
AccII	CGCG	5 cut(s)	265, 267, 309, 371, 384
AclWI	GGATC	5 cut(s)	154, 341, 1096, 1109, 1414
AcoI	YGGCCR	4 cut(s)	339, 750, 1547, 1741
AcuI	CTGAAG	2 cut(s)	464, 1502
AcyI	GRCGYC	1 cut(s)	1936
AdeI	CACNNNGTG	1 cut(s)	887
AfaI	GTAC	4 cut(s)	648, 1491, 1599, 1677
AfeI	AGCGCT	1 cut(s)	188
AfiI	CCNNNNNNNGG	9 cut(s)	15, 18, 181, 585, 1119, 1384, 1447, 1552, 1739
AflIII	ACRYGT	3 cut(s)	443, 498, 886
AgsI	TTSAA	6 cut(s)	91, 1042, 1415, 1855, 1925, 2032
AhdI	GACNNNNNGTC	1 cut(s)	1959
AjiI	CACGTC	2 cut(s)	409, 444
AjnI	CCWGG	2 cut(s)	462, 1776
AluBI	AGCT	7 cut(s)	535, 730, 1294, 1361, 1411, 1507, 1667
AluI	AGCT	7 cut(s)	535, 730, 1294, 1361, 1411, 1507, 1667
Alw21I	GWGCWC	1 cut(s)	1363
Alw26I	GTCTC	3 cut(s)	1299, 1347, 1820
AlwI	GGATC	5 cut(s)	154, 341, 1096, 1109, 1414
Ama87I	CYCGRG	1 cut(s)	210
Aor51HI	AGCGCT	1 cut(s)	188
ApaI	GGGCCC	1 cut(s)	393
ApeKI	GCWGC	6 cut(s)	150, 525, 1291, 1388, 1972, 2012
ArsI	GACNNNNNNTTYG	2 cut(s)	679, 711
AseI	ATTAAT	2 cut(s)	1131, 1235
Asp700I	GAANNNNTTC	1 cut(s)	979
Asp718I	GGTACC	1 cut(s)	1489
AspLEI	GCGC	9 cut(s)	189, 267, 269, 373, 384, 415, 421, 1377, 1938
AspS9I	GGNCC	6 cut(s)	198, 242, 389, 390, 576, 1591
AsuC2I	CCSGG	5 cut(s)	196, 259, 1433, 1448, 1686
AsuHPI	GGTGA	5 cut(s)	448, 563, 1580, 1712, 1927
AvaI	CYCGRG	1 cut(s)	210
AvaII	GGWCC	3 cut(s)	198, 576, 1591
AxyI	CCTNAGG	2 cut(s)	581, 624
BaeGI	GKGCMC	1 cut(s)	393
BalI	TGGCCA	1 cut(s)	752
BamHI	GGATCC	1 cut(s)	1101
BanI	GGYRCC	3 cut(s)	1489, 1719, 1935
BanII	GRGCYC	3 cut(s)	393, 1224, 1363
BauI	CACGAG	1 cut(s)	536
BbsI	GAAGAC	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	1363
BbvCI	CCTCAGC	1 cut(s)	1759
BbvI	GCAGC	6 cut(s)	137, 512, 1303, 1375, 1959, 1999
BccI	CCATC	4 cut(s)	278, 508, 1264, 1430
BceAI	ACGGC	3 cut(s)	326, 1324, 1890
BcgI	CGANNNNNNTGC	6 cut(s)	103, 137, 679, 713, 1449, 1483
BciT130I	CCWGG	2 cut(s)	464, 1778
BclI	TGATCA	3 cut(s)	681, 1917, 2041
BcnI	CCSGG	5 cut(s)	196, 259, 1433, 1448, 1686
BcoDI	GTCTC	3 cut(s)	1299, 1347, 1820
BfaI	CTAG	5 cut(s)	675, 1208, 1472, 1508, 1664
BfoI	RGCGCY	5 cut(s)	190, 416, 422, 1378, 1939
BglII	AGATCT	1 cut(s)	1474
BlpI	GCTNAGC	1 cut(s)	374
Bme1390I	CCNGG	7 cut(s)	196, 259, 464, 1433, 1448, 1686, 1778
Bme18I	GGWCC	3 cut(s)	198, 576, 1591
BmeRI	GACNNNNNGTC	1 cut(s)	1959
BmeT110I	CYCGRG	1 cut(s)	210
BmgBI	CACGTC	2 cut(s)	409, 444
BmgT120I	GGNCC	6 cut(s)	198, 242, 389, 390, 576, 1591
BmrFI	CCNGG	7 cut(s)	196, 259, 464, 1433, 1448, 1686, 1778
BmrI	ACTGGG	2 cut(s)	1129, 1589
BmsI	GCATC	4 cut(s)	442, 589, 1311, 1795
BmuI	ACTGGG	2 cut(s)	1129, 1589
BoxI	GACNNNNGTC	2 cut(s)	212, 921
BpiI	GAAGAC	1 cut(s)	127
BpmI	CTGGAG	1 cut(s)	161
Bpu10I	CCTNAGC	2 cut(s)	1649, 1759
Bpu1102I	GCTNAGC	1 cut(s)	374
BpuMI	CCSGG	5 cut(s)	196, 259, 1433, 1448, 1686
BsaAI	YACGTR	2 cut(s)	281, 499
BsaHI	GRCGYC	1 cut(s)	1936
BsaJI	CCNNGG	3 cut(s)	954, 1563, 1642
BsaWI	WCCGGW	1 cut(s)	983
Bsc4I	CCNNNNNNNGG	9 cut(s)	15, 18, 181, 585, 1119, 1384, 1447, 1552, 1739
Bse118I	RCCGGY	2 cut(s)	1079, 1938
Bse1I	ACTGG	6 cut(s)	178, 504, 1124, 1178, 1595, 1671
Bse21I	CCTNAGG	2 cut(s)	581, 624
BseBI	CCWGG	2 cut(s)	464, 1778
BseDI	CCNNGG	3 cut(s)	954, 1563, 1642
BseGI	GGATG	5 cut(s)	457, 720, 866, 1326, 1441
BseLI	CCNNNNNNNGG	9 cut(s)	15, 18, 181, 585, 1119, 1384, 1447, 1552, 1739
BseMII	CTCAG	8 cut(s)	131, 365, 561, 595, 638, 1640, 1773, 1879
BseNI	ACTGG	6 cut(s)	178, 504, 1124, 1178, 1595, 1671
BsePI	GCGCGC	1 cut(s)	265
BseRI	GAGGAG	1 cut(s)	1747
BseSI	GKGCMC	1 cut(s)	393
BseX3I	CGGCCG	1 cut(s)	1741
BseXI	GCAGC	6 cut(s)	137, 512, 1303, 1375, 1959, 1999
BsgI	GTGCAG	1 cut(s)	1244
Bsh1236I	CGCG	5 cut(s)	265, 267, 309, 371, 384
Bsh1285I	CGRYCG	1 cut(s)	1744
BshNI	GGYRCC	3 cut(s)	1489, 1719, 1935
BsiEI	CGRYCG	1 cut(s)	1744
BsiHKAI	GWGCWC	1 cut(s)	1363
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	9 cut(s)	195, 259, 984, 1080, 1433, 1447, 1546, 1685, 1939
BslFI	GGGAC	6 cut(s)	113, 557, 562, 1463, 1604, 1997
BslI	CCNNNNNNNGG	9 cut(s)	15, 18, 181, 585, 1119, 1384, 1447, 1552, 1739
BsmAI	GTCTC	3 cut(s)	1299, 1347, 1820
BsmBI	CGTCTC	1 cut(s)	1347
BsmFI	GGGAC	6 cut(s)	113, 557, 562, 1463, 1604, 1997
BsmI	GAATGC	2 cut(s)	107, 995
BsoBI	CYCGRG	1 cut(s)	210
Bsp120I	GGGCCC	1 cut(s)	389
Bsp1286I	GDGCHC	3 cut(s)	393, 1224, 1363
Bsp143I	GATC	8 cut(s)	159, 346, 681, 1101, 1419, 1474, 1917, 2041
Bsp1720I	GCTNAGC	1 cut(s)	374
BspCNI	CTCAG	8 cut(s)	130, 366, 560, 594, 637, 1641, 1772, 1878
BspFNI	CGCG	5 cut(s)	265, 267, 309, 371, 384
BspHI	TCATGA	1 cut(s)	684
BspPI	GGATC	5 cut(s)	154, 341, 1096, 1109, 1414
BspQI	GCTCTTC	1 cut(s)	359
BspT107I	GGYRCC	3 cut(s)	1489, 1719, 1935
BsrBI	CCGCTC	2 cut(s)	352, 845
BsrFI	RCCGGY	2 cut(s)	1079, 1938
BsrI	ACTGG	6 cut(s)	178, 504, 1124, 1178, 1595, 1671
BssAI	RCCGGY	2 cut(s)	1079, 1938
BssECI	CCNNGG	3 cut(s)	954, 1563, 1642
BssHII	GCGCGC	1 cut(s)	265
BssMI	GATC	8 cut(s)	159, 346, 681, 1101, 1419, 1474, 1917, 2041
BssNI	GRCGYC	1 cut(s)	1936
BssSI	CACGAG	1 cut(s)	536
BssT1I	CCWWGG	3 cut(s)	954, 1563, 1642
Bst2BI	CACGAG	1 cut(s)	536
Bst2UI	CCWGG	2 cut(s)	464, 1778
Bst4CI	ACNGT	6 cut(s)	657, 740, 912, 1382, 1494, 1555
Bst6I	CTCTTC	1 cut(s)	359
BstACI	GRCGYC	1 cut(s)	1936
BstBAI	YACGTR	2 cut(s)	281, 499
BstC8I	GCNNGC	8 cut(s)	112, 267, 380, 417, 1081, 1213, 1363, 1940
BstDEI	CTNAG	8 cut(s)	117, 374, 547, 581, 624, 1649, 1759, 1865
BstF5I	GGATG	5 cut(s)	457, 720, 866, 1326, 1441
BstFNI	CGCG	5 cut(s)	265, 267, 309, 371, 384
BstH2I	RGCGCY	5 cut(s)	190, 416, 422, 1378, 1939
BstHHI	GCGC	9 cut(s)	189, 267, 269, 373, 384, 415, 421, 1377, 1938
BstKTI	GATC	8 cut(s)	162, 349, 684, 1104, 1422, 1477, 1920, 2044
BstMAI	GTCTC	3 cut(s)	1299, 1347, 1820
BstMBI	GATC	8 cut(s)	159, 346, 681, 1101, 1419, 1474, 1917, 2041
BstMCI	CGRYCG	1 cut(s)	1744
BstMWI	GCNNNNNNNGC	5 cut(s)	111, 379, 388, 1330, 1728
BstNI	CCWGG	2 cut(s)	464, 1778
BstNSI	RCATGY	1 cut(s)	334
BstPAI	GACNNNNGTC	2 cut(s)	212, 921
BstSCI	CCNGG	7 cut(s)	194, 257, 462, 1431, 1446, 1684, 1776
BstSLI	GKGCMC	1 cut(s)	393
BstUI	CGCG	5 cut(s)	265, 267, 309, 371, 384
BstV1I	GCAGC	6 cut(s)	137, 512, 1303, 1375, 1959, 1999
BstV2I	GAAGAC	1 cut(s)	127
BstX2I	RGATCY	3 cut(s)	346, 1101, 1474
BstXI	CCANNNNNNTGG	1 cut(s)	386
BstYI	RGATCY	3 cut(s)	346, 1101, 1474
BstZI	CGGCCG	1 cut(s)	1741
Bsu36I	CCTNAGG	2 cut(s)	581, 624
BtgZI	GCGATG	1 cut(s)	352
BtrI	CACGTC	2 cut(s)	409, 444
BtsCI	GGATG	5 cut(s)	457, 720, 866, 1326, 1441
BtsIMutI	CAGTG	6 cut(s)	185, 511, 745, 917, 1678, 1827
Cac8I	GCNNGC	8 cut(s)	112, 267, 380, 417, 1081, 1213, 1363, 1940
CciI	TCATGA	1 cut(s)	684
CfoI	GCGC	9 cut(s)	189, 267, 269, 373, 384, 415, 421, 1377, 1938
Cfr10I	RCCGGY	2 cut(s)	1079, 1938
Cfr13I	GGNCC	6 cut(s)	198, 242, 389, 390, 576, 1591
CseI	GACGC	3 cut(s)	89, 271, 298
Csp6I	GTAC	4 cut(s)	647, 1490, 1598, 1676
CviQI	GTAC	4 cut(s)	647, 1490, 1598, 1676
DdeI	CTNAG	8 cut(s)	117, 374, 547, 581, 624, 1649, 1759, 1865
DinI	GGCGCC	1 cut(s)	1937
DpnI	GATC	8 cut(s)	161, 348, 683, 1103, 1421, 1476, 1919, 2043
DpnII	GATC	8 cut(s)	159, 346, 681, 1101, 1419, 1474, 1917, 2041
DraI	TTTAAA	1 cut(s)	814
DraIII	CACNNNGTG	1 cut(s)	887
DriI	GACNNNNNGTC	1 cut(s)	1959
EaeI	YGGCCR	4 cut(s)	339, 750, 1547, 1741
EagI	CGGCCG	1 cut(s)	1741
Eam1104I	CTCTTC	1 cut(s)	359
Eam1105I	GACNNNNNGTC	1 cut(s)	1959
EarI	CTCTTC	1 cut(s)	359
EciI	GGCGGA	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	1361
EclXI	CGGCCG	1 cut(s)	1741
Eco130I	CCWWGG	3 cut(s)	954, 1563, 1642
Eco147I	AGGCCT	2 cut(s)	65, 1647
Eco24I	GRGCYC	3 cut(s)	393, 1224, 1363
Eco47I	GGWCC	3 cut(s)	198, 576, 1591
Eco47III	AGCGCT	1 cut(s)	188
Eco52I	CGGCCG	1 cut(s)	1741
Eco53kI	GAGCTC	1 cut(s)	1361
Eco57I	CTGAAG	2 cut(s)	464, 1502
Eco81I	CCTNAGG	2 cut(s)	581, 624
Eco88I	CYCGRG	1 cut(s)	210
EcoICRI	GAGCTC	1 cut(s)	1361
EcoO109I	RGGNCCY	3 cut(s)	198, 390, 1591
EcoRII	CCWGG	2 cut(s)	462, 1776
EcoT14I	CCWWGG	3 cut(s)	954, 1563, 1642
EcoT22I	ATGCAT	1 cut(s)	997
EcoT38I	GRGCYC	3 cut(s)	393, 1224, 1363
EgeI	GGCGCC	1 cut(s)	1937
EheI	GGCGCC	1 cut(s)	1937
ErhI	CCWWGG	3 cut(s)	954, 1563, 1642
Esp3I	CGTCTC	1 cut(s)	1347
FalI	AAGNNNNNCTT	2 cut(s)	1395, 1427
FaqI	GGGAC	6 cut(s)	113, 557, 562, 1463, 1604, 1997
FauI	CCCGC	3 cut(s)	155, 521, 1204
FauNDI	CATATG	1 cut(s)	1532
FbaI	TGATCA	3 cut(s)	681, 1917, 2041
FblI	GTMKAC	2 cut(s)	1074, 1557
FokI	GGATG	5 cut(s)	464, 707, 873, 1333, 1448
FriOI	GRGCYC	3 cut(s)	393, 1224, 1363
FspBI	CTAG	5 cut(s)	675, 1208, 1472, 1508, 1664
GlaI	GCGC	9 cut(s)	188, 266, 268, 372, 383, 414, 420, 1376, 1937
GsuI	CTGGAG	1 cut(s)	161
HaeII	RGCGCY	5 cut(s)	190, 416, 422, 1378, 1939
HapII	CCGG	9 cut(s)	195, 259, 984, 1080, 1433, 1447, 1546, 1685, 1939
HgaI	GACGC	3 cut(s)	89, 271, 298
HhaI	GCGC	9 cut(s)	189, 267, 269, 373, 384, 415, 421, 1377, 1938
Hin1I	GRCGYC	1 cut(s)	1936
Hin6I	GCGC	9 cut(s)	187, 265, 267, 371, 382, 413, 419, 1375, 1936
HinP1I	GCGC	9 cut(s)	187, 265, 267, 371, 382, 413, 419, 1375, 1936
HincII	GTYRAC	1 cut(s)	1203
HindII	GTYRAC	1 cut(s)	1203
HinfI	GANTC	6 cut(s)	213, 430, 509, 545, 759, 1993
HpaII	CCGG	9 cut(s)	195, 259, 984, 1080, 1433, 1447, 1546, 1685, 1939
HphI	GGTGA	5 cut(s)	448, 563, 1580, 1712, 1927
Hpy166II	GTNNAC	7 cut(s)	217, 745, 1075, 1203, 1558, 1676, 1872
Hpy188I	TCNGA	2 cut(s)	1164, 1482
Hpy188III	TCNNGA	5 cut(s)	685, 1249, 1304, 1990, 2048
Hpy8I	GTNNAC	7 cut(s)	217, 745, 1075, 1203, 1558, 1676, 1872
Hpy99I	CGWCG	3 cut(s)	80, 83, 314
HpyCH4III	ACNGT	6 cut(s)	657, 740, 912, 1382, 1494, 1555
HpyCH4IV	ACGT	8 cut(s)	280, 291, 363, 408, 443, 498, 886, 1636
HpyF10VI	GCNNNNNNNGC	5 cut(s)	111, 379, 388, 1330, 1728
HpyF3I	CTNAG	8 cut(s)	117, 374, 547, 581, 624, 1649, 1759, 1865
HpySE526I	ACGT	8 cut(s)	280, 291, 363, 408, 443, 498, 886, 1636
Hsp92I	GRCGYC	1 cut(s)	1936
HspAI	GCGC	9 cut(s)	187, 265, 267, 371, 382, 413, 419, 1375, 1936
KasI	GGCGCC	1 cut(s)	1935
KflI	GGGWCCC	1 cut(s)	1591
KpnI	GGTACC	1 cut(s)	1493
KroI	GCCGGC	2 cut(s)	1079, 1938
KroNI	GCCGGC	2 cut(s)	1081, 1940
Ksp22I	TGATCA	3 cut(s)	681, 1917, 2041
Kzo9I	GATC	8 cut(s)	159, 346, 681, 1101, 1419, 1474, 1917, 2041
LguI	GCTCTTC	1 cut(s)	359
LmnI	GCTCC	3 cut(s)	184, 956, 1145
Lsp1109I	GCAGC	6 cut(s)	137, 512, 1303, 1375, 1959, 1999
LweI	GCATC	4 cut(s)	442, 589, 1311, 1795
MaeI	CTAG	5 cut(s)	675, 1208, 1472, 1508, 1664
MaeII	ACGT	8 cut(s)	280, 291, 363, 408, 443, 498, 886, 1636
MaeIII	GTNAC	8 cut(s)	427, 563, 769, 776, 914, 1169, 1535, 1841
MalI	GATC	8 cut(s)	161, 348, 683, 1103, 1421, 1476, 1919, 2043
MbiI	CCGCTC	2 cut(s)	352, 845
MboI	GATC	8 cut(s)	159, 346, 681, 1101, 1419, 1474, 1917, 2041
MboII	GAAGA	7 cut(s)	79, 127, 346, 605, 1469, 1495, 1871
MflI	RGATCY	3 cut(s)	346, 1101, 1474
MhlI	GDGCHC	3 cut(s)	393, 1224, 1363
MlsI	TGGCCA	1 cut(s)	752
MluCI	AATT	9 cut(s)	54, 618, 633, 642, 1128, 1236, 1415, 1578, 1894
MluNI	TGGCCA	1 cut(s)	752
Mly113I	GGCGCC	1 cut(s)	1936
MlyI	GAGTC	5 cut(s)	222, 424, 518, 539, 753
MmeI	TCCRAC	4 cut(s)	835, 928, 1187, 1447
Mox20I	TGGCCA	1 cut(s)	752
Mph1103I	ATGCAT	1 cut(s)	997
MroNI	GCCGGC	2 cut(s)	1079, 1938
MroXI	GAANNNNTTC	1 cut(s)	979
MscI	TGGCCA	1 cut(s)	752
MseI	TTAA	9 cut(s)	486, 641, 813, 819, 836, 1127, 1131, 1235, 1455
MslI	CAYNNNNRTG	2 cut(s)	407, 1268
Msp20I	TGGCCA	1 cut(s)	752
MspA1I	CMGCKG	2 cut(s)	150, 1294
MspI	CCGG	9 cut(s)	195, 259, 984, 1080, 1433, 1447, 1546, 1685, 1939
MspR9I	CCNGG	7 cut(s)	196, 259, 464, 1433, 1448, 1686, 1778
Mva1269I	GAATGC	2 cut(s)	107, 995
MvaI	CCWGG	2 cut(s)	464, 1778
MvnI	CGCG	5 cut(s)	265, 267, 309, 371, 384
MwoI	GCNNNNNNNGC	5 cut(s)	111, 379, 388, 1330, 1728
NaeI	GCCGGC	2 cut(s)	1081, 1940
NarI	GGCGCC	1 cut(s)	1936
NciI	CCSGG	5 cut(s)	196, 259, 1433, 1448, 1686
NdeI	CATATG	1 cut(s)	1532
NdeII	GATC	8 cut(s)	159, 346, 681, 1101, 1419, 1474, 1917, 2041
NgoMIV	GCCGGC	2 cut(s)	1079, 1938
NmeAIII	GCCGAG	1 cut(s)	1719
NmuCI	GTSAC	6 cut(s)	427, 563, 769, 914, 1169, 1535
NsiI	ATGCAT	1 cut(s)	997
NspI	RCATGY	1 cut(s)	334
PacI	TTAATTAA	1 cut(s)	1131
PagI	TCATGA	1 cut(s)	684
PauI	GCGCGC	1 cut(s)	265
PceI	AGGCCT	2 cut(s)	65, 1647
PciSI	GCTCTTC	1 cut(s)	359
PcsI	WCGNNNNNNNCGW	3 cut(s)	75, 129, 1633
PctI	GAATGC	2 cut(s)	107, 995
PdiI	GCCGGC	2 cut(s)	1081, 1940
PdmI	GAANNNNTTC	1 cut(s)	979
PfeI	GAWTC	1 cut(s)	1993
PflFI	GACNNNGTC	1 cut(s)	1541
PflMI	CCANNNNNTGG	1 cut(s)	1119
PfoI	TCCNGGA	1 cut(s)	1431
PleI	GAGTC	5 cut(s)	221, 424, 517, 539, 753
PluTI	GGCGCC	1 cut(s)	1939
PpsI	GAGTC	5 cut(s)	221, 424, 517, 539, 753
Ppu21I	YACGTR	2 cut(s)	281, 499
PpuMI	RGGWCCY	2 cut(s)	198, 1591
PshAI	GACNNNNGTC	2 cut(s)	212, 921
PshBI	ATTAAT	2 cut(s)	1131, 1235
Psp124BI	GAGCTC	1 cut(s)	1363
Psp5II	RGGWCCY	2 cut(s)	198, 1591
Psp6I	CCWGG	2 cut(s)	462, 1776
PspGI	CCWGG	2 cut(s)	462, 1776
PspOMI	GGGCCC	1 cut(s)	389
PspPI	GGNCC	6 cut(s)	198, 242, 389, 390, 576, 1591
PspPPI	RGGWCCY	2 cut(s)	198, 1591
PsuI	RGATCY	3 cut(s)	346, 1101, 1474
PsyI	GACNNNGTC	1 cut(s)	1541
PteI	GCGCGC	1 cut(s)	265
PvuII	CAGCTG	1 cut(s)	1294
RsaI	GTAC	4 cut(s)	648, 1491, 1599, 1677
RsaNI	GTAC	4 cut(s)	647, 1490, 1598, 1676
RseI	CAYNNNNRTG	2 cut(s)	407, 1268
SacI	GAGCTC	1 cut(s)	1363
SapI	GCTCTTC	1 cut(s)	359
SaqAI	TTAA	9 cut(s)	486, 641, 813, 819, 836, 1127, 1131, 1235, 1455
Sau3AI	GATC	8 cut(s)	159, 346, 681, 1101, 1419, 1474, 1917, 2041
Sau96I	GGNCC	6 cut(s)	198, 242, 389, 390, 576, 1591
SchI	GAGTC	5 cut(s)	222, 424, 518, 539, 753
ScrFI	CCNGG	7 cut(s)	196, 259, 464, 1433, 1448, 1686, 1778
SduI	GDGCHC	3 cut(s)	393, 1224, 1363
SfaNI	GCATC	4 cut(s)	442, 589, 1311, 1795
SfoI	GGCGCC	1 cut(s)	1937
SinI	GGWCC	3 cut(s)	198, 576, 1591
SmiMI	CAYNNNNRTG	2 cut(s)	407, 1268
SmlI	CTYRAG	2 cut(s)	13, 2048
SmoI	CTYRAG	2 cut(s)	13, 2048
Sse9I	AATT	9 cut(s)	54, 618, 633, 642, 1128, 1236, 1415, 1578, 1894
SseBI	AGGCCT	2 cut(s)	65, 1647
SspDI	GGCGCC	1 cut(s)	1935
SspI	AATATT	1 cut(s)	963
SspMI	CTAG	5 cut(s)	675, 1208, 1472, 1508, 1664
SstI	GAGCTC	1 cut(s)	1363
StuI	AGGCCT	2 cut(s)	65, 1647
StyD4I	CCNGG	7 cut(s)	194, 257, 462, 1431, 1446, 1684, 1776
StyI	CCWWGG	3 cut(s)	954, 1563, 1642
TaaI	ACNGT	6 cut(s)	657, 740, 912, 1382, 1494, 1555
TaiI	ACGT	8 cut(s)	283, 294, 366, 411, 446, 501, 889, 1639
TaqI	TCGA	7 cut(s)	273, 512, 597, 1303, 1680, 1892, 1989
TasI	AATT	9 cut(s)	54, 618, 633, 642, 1128, 1236, 1415, 1578, 1894
TatI	WGTACW	2 cut(s)	1597, 1675
TauI	GCSGC	7 cut(s)	243, 845, 1063, 1731, 1746, 1913, 2038
TfiI	GAWTC	1 cut(s)	1993
Tru1I	TTAA	9 cut(s)	486, 641, 813, 819, 836, 1127, 1131, 1235, 1455
Tru9I	TTAA	9 cut(s)	486, 641, 813, 819, 836, 1127, 1131, 1235, 1455
TscAI	CASTG	6 cut(s)	185, 511, 745, 917, 1678, 1834
TseFI	GTSAC	6 cut(s)	427, 563, 769, 914, 1169, 1535
TseI	GCWGC	6 cut(s)	150, 525, 1291, 1388, 1972, 2012
Tsp45I	GTSAC	6 cut(s)	427, 563, 769, 914, 1169, 1535
TspDTI	ATGAA	4 cut(s)	709, 1610, 1719, 1872
TspRI	CASTG	6 cut(s)	185, 511, 745, 917, 1678, 1834
Tth111I	GACNNNGTC	1 cut(s)	1541
Van91I	CCANNNNNTGG	1 cut(s)	1119
VpaK11BI	GGWCC	3 cut(s)	198, 576, 1591
VspI	ATTAAT	2 cut(s)	1131, 1235
XceI	RCATGY	1 cut(s)	334
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XmiI	GTMKAC	2 cut(s)	1074, 1557
XmnI	GAANNNNTTC	1 cut(s)	979
XspI	CTAG	5 cut(s)	675, 1208, 1472, 1508, 1664
Zsp2I	ATGCAT	1 cut(s)	997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.