Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003871

Physical Location & Seq

Genomic Coordinates Reverse (-)

6237740 .. 6241878

Gene Structure 4139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026815

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2031 bp

ATGTCGTCACCATCGCACTCCAGGTGGAATAATGGCAATGGAGACGACTCATTTGAGTTTAGTTCTCCGGAATGCTATGCTTGCACTCAGGCGGGTCTTCCGGTGTTTCACTCCACCCGCTGCCGTGACCCGATCCACCATTCCCAGCTGCAATGGGAGCGCTCCGCCGGTTCTTCTTTGACCCGGGTGGAGACCCCGACGGACCTCAAATGCAGCCCCACCGACCTGACCCGGACCCGGGTCATCGACCCGCGTAGCAACTACGTGAAAAGGTTGAACCGTGTCGTCCTTATGGCACGTGGCCTAGCGGTCGCCGTGGATCCGCTCTTCCTCTACGTCATCGCTTTGAGCAAGAGTGGGGCCTCCTGCTTCTACATGGACGTCGCCCTGGCCTTCTACGTGACCGTCTTTCGCACGTGTCTGGACGCCTTACAACTGGCCCACATTTTGCTTCAGTTCAAGCTTGCATACGTGTCCAGTGAGTCGATGGTGACTGGCTGCGGGAAGCTCGTGTGGGACCCGCGAGAGATTGCGTGGCACTACATGAAGTCCTTCAGGGGGTTCTGGCTTGACGTCTTTGTCATTCTACCTATTCCTCAGATTGTAATTTGGCTAATTGAGCCAAAATTGCTTAGAGGAGAACGGCCGACACAGATAATGGCGACCGTTTTGCTAACCTTCTTGTTCCAGTTCACCCCCAAGGTCTACCACATTATTCACTTGGCCAAAAGACTACAAAAGGTCACAGGTTACATCTTCTCATATGGCAACATTTGGTGGCGTTTCAAACTTAATGTCATCGCCTACTTAACTGCGTGTCACGTTGTTGGAGGAATTTGGTATGTTCTTGCAACACAACGTGTAATGTTATGCATCCAAGAACAGTGTGAGAGTATTAAAAAGTGTAATCTATCTCTCTATTGCTCAAGGGAAATATTTTCCCATGGAAATTTTTCTGAAGTTAACAAAATTCCAAAGATAAAGGCTATGTGCTTTGATGAGGACACTGAATTTGGCTACGGAATTTACCAGCCGATCCTTCTTGTCTATAATGGCAATACACGCGCCGTTAGGATCCTTTATCCCATTTACTGGGGTTTAAATAACCTAGGCTCCTTTGCCAACAATCTAACTCCTACAAGTGACTGGCTGGAACTGTTATTCTCTTGCTGCTTGTGTCTGGCGGGCTTGAGCCTCTTTATTACTTTACTTGGAAATATCCAGTTTTTTCTGCATTCGATCATGTCAAACAAGAAGAAAATGCAGTTGAAATATCGAGACATGGAATGGTGGATGCATCGTAGACAGTTGCCGCATCATTTGAGAAAGAGAGTTCGACATTTTCAACGCTGCAGTTGGGCAGCAATGCAAGGACTGGATGAGATTGATTTGATCCAAAACTTTCCTGATGGACTCCGAAGGGACATCAAGCGCCATCTTTGCCTAGATCTTGTCTTGAAGGTACCGCTGTTCCACAAGTTGGATGATGTGATTCTTGACAACATATGTGATCTAGTCCGTCCACTAATCTACTCCAAGGGTGAAAAGATAATTAGAGAAGGAGACCCTGTCCAAAGGATGGTGTTCTTGGTTCGTGGACGCATAAAACGTAGTCAAGGCCTGAGCAAAGGGTTCTTAGCCATGAGTGTGCTAGAACCTGGTGCCTTCTTTGGGGATGAGCTTCTCTCGTGGTGCCTCCGCCGTCCATTTTTAGGCCGCCTTCCTCCCTCATCCGCCACATTCACTACCATGGGACCTGTTGAAGCATTTGGCCTCGACGCAGAGTTTCTTCGCTACATTTCTGATCATTTTCGGTACAAATTCTCCAGCGAAAACCTCAGACGGACGGCGAGGTATTACTCGTCAAATTGGAGGACTTGGGGGGCTGTCATCATTCAACTTGCTTGGCGTCGTCACAGGGAGAGGACTAAGGGTAGTCCAACACCAATACAAAATTGGGATATTGAGAACCGGCTTAAAATGTATGCTGCCATGTTCTTGTCAGTAAAGCCTCAGGACCATATGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005215 GO:0005216 GO:0005217 GO:0005221 GO:0005222 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005262 GO:0005267 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007263 GO:0008150 GO:0008219 GO:0008324 GO:0009626 GO:0009987 GO:0012501 GO:0015075 GO:0015077 GO:0015079 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0019932 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031224 GO:0031226 GO:0033554 GO:0034050 GO:0034220 GO:0035556 GO:0042391 GO:0043855 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0065008 GO:0070509 GO:0070588 GO:0070838 GO:0071804 GO:0071805 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0099094

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

677

Amino Acids

78.5

Weight (kDa)

9.4

Isoelectric Point (pI)

51.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	511 - 598	8.9e-08	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15410 AT5G15410
fragaria_vesca	FvH4_6g47520 FvH4_6g47520 FvH4_7g26890
malus_domestica	MD07G1248200.v1.1 MD09G1061000.v1.1 MD17G1056400.v1.1
prunus_persica	Prupe.2G272100_v2.0.a1 Prupe.3G259100_v2.0.a1
pyrus_communis	pycom07g22190 pycom111g05130 pycom17g05550
rosa_chinensis	RchiOBHm_Chr1g0373561 RchiOBHm_Chr2g0166581
rosa_laevigata	RLG00000021630 RLG00000026815
rosa_multiflora	Rmu_sc0002860.1_g000003 Rmu_sc0008222.1_g000009
rosa_roxburghii	Rroxscaffold_2G00084740 Rroxscaffold_4G00284140
rosa_rugosa	Rorug01G0378300 Rorug02G0524300 Rorug02G0524400
rosa_samantha	Rh1AG387700 Rh1BG352000 Rh1CG364700 Rh1DG382400 Rh2AG590200 Rh2BG602300 Rh2CG573000 Rh2DG612900
rosa_wichuraiana	Rw1G034770 Rw2G049200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	578
AatII	GACGTC	2 cut(s)	384, 576
Acc65I	GGTACC	1 cut(s)	1462
AccB1I	GGYRCC	3 cut(s)	1462, 1661, 1692
AccB7I	CCANNNNNTGG	3 cut(s)	1092, 1480, 1579
AccBSI	CCGCTC	1 cut(s)	325
AccI	GTMKAC	2 cut(s)	705, 1303
AccII	CGCG	3 cut(s)	253, 523, 1065
AccIII	TCCGGA	1 cut(s)	67
AclWI	GGATC	7 cut(s)	127, 314, 327, 1030, 1069, 1082, 1387
AcoI	YGGCCR	2 cut(s)	644, 723
AcsI	RAATTY	6 cut(s)	834, 949, 969, 1010, 1023, 1820
AcuI	CTGAAG	3 cut(s)	437, 538, 978
AcvI	CACGTG	2 cut(s)	299, 417
AcyI	GRCGYC	4 cut(s)	381, 426, 573, 1909
AdeI	CACNNNGTG	1 cut(s)	860
AfaI	GTAC	2 cut(s)	1464, 1817
AfeI	AGCGCT	1 cut(s)	161
AfiI	CCNNNNNNNGG	8 cut(s)	237, 238, 558, 1092, 1480, 1579, 1671, 1712
AflIII	ACRYGT	3 cut(s)	416, 471, 859
AgsI	TTSAA	8 cut(s)	277, 460, 787, 1270, 1346, 1459, 1763, 1898
AjnI	CCWGG	3 cut(s)	20, 387, 1657
AluBI	AGCT	4 cut(s)	148, 463, 508, 1681
AluI	AGCT	4 cut(s)	148, 463, 508, 1681
Alw26I	GTCTC	4 cut(s)	36, 185, 1272, 1557
AlwI	GGATC	7 cut(s)	127, 314, 327, 1030, 1069, 1082, 1387
Ama87I	CYCGRG	2 cut(s)	183, 237
Aor13HI	TCCGGA	1 cut(s)	67
Aor51HI	AGCGCT	1 cut(s)	161
AoxI	GGCC	9 cut(s)	301, 360, 390, 438, 644, 723, 1618, 1714, 1771
ApeKI	GCWGC	8 cut(s)	120, 148, 213, 498, 1170, 1350, 1361, 1988
ApoI	RAATTY	6 cut(s)	834, 949, 969, 1010, 1023, 1820
ArsI	GACNNNNNNTTYG	6 cut(s)	35, 67, 780, 812, 995, 1027
Asp700I	GAANNNNTTC	2 cut(s)	551, 952
Asp718I	GGTACC	1 cut(s)	1462
AspA2I	CCTAGG	1 cut(s)	1108
AspLEI	GCGC	3 cut(s)	162, 1067, 1434
AspS9I	GGNCC	7 cut(s)	202, 234, 360, 439, 517, 1754, 2017
AsuC2I	CCSGG	5 cut(s)	184, 185, 232, 238, 239
AsuHPI	GGTGA	3 cut(s)	502, 685, 1553
AvaI	CYCGRG	2 cut(s)	183, 237
AvaII	GGWCC	5 cut(s)	202, 234, 517, 1754, 2017
AvrII	CCTAGG	1 cut(s)	1108
AxyI	CCTNAGG	1 cut(s)	2013
BaeI	ACNNNNGTAYC	2 cut(s)	1454, 1487
BalI	TGGCCA	1 cut(s)	725
BamHI	GGATCC	2 cut(s)	319, 1074
BanI	GGYRCC	3 cut(s)	1462, 1661, 1692
BauI	CACGAG	2 cut(s)	509, 1687
BbrPI	CACGTG	2 cut(s)	299, 417
BbsI	GAAGAC	1 cut(s)	89
BbvI	GCAGC	8 cut(s)	107, 135, 225, 485, 1157, 1337, 1373, 1975
BccI	CCATC	5 cut(s)	19, 481, 1403, 1443, 1573
BceAI	ACGGC	6 cut(s)	108, 299, 659, 1052, 1686, 1863
BcgI	CGANNNNNNTGC	2 cut(s)	652, 686
BciT130I	CCWGG	3 cut(s)	22, 389, 1659
BclI	TGATCA	1 cut(s)	1804
BcnI	CCSGG	5 cut(s)	184, 185, 232, 238, 239
BcoDI	GTCTC	4 cut(s)	36, 185, 1272, 1557
BfaI	CTAG	6 cut(s)	305, 1109, 1445, 1514, 1652, 2029
BfmI	CTRYAG	1 cut(s)	1351
BfoI	RGCGCY	2 cut(s)	163, 1435
BglII	AGATCT	1 cut(s)	1447
BlnI	CCTAGG	1 cut(s)	1108
Bme1390I	CCNGG	8 cut(s)	22, 184, 185, 232, 238, 239, 389, 1659
Bme18I	GGWCC	5 cut(s)	202, 234, 517, 1754, 2017
BmeT110I	CYCGRG	2 cut(s)	183, 237
BmgT120I	GGNCC	7 cut(s)	202, 234, 360, 439, 517, 1754, 2017
BmrFI	CCNGG	8 cut(s)	22, 184, 185, 232, 238, 239, 389, 1659
BmrI	ACTGGG	1 cut(s)	1102
BmsI	GCATC	4 cut(s)	882, 1284, 1306, 1324
BmuI	ACTGGG	1 cut(s)	1102
BoxI	GACNNNNGTC	1 cut(s)	239
BpiI	GAAGAC	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	1670, 1702
BpmI	CTGGAG	2 cut(s)	4, 1810
Bpu10I	CCTNAGC	1 cut(s)	1622
BpuEI	CTTGAG	2 cut(s)	910, 1210
BpuMI	CCSGG	5 cut(s)	184, 185, 232, 238, 239
BsaAI	YACGTR	5 cut(s)	265, 299, 400, 417, 472
BsaHI	GRCGYC	4 cut(s)	381, 426, 573, 1909
BsaI	GGTCTC	2 cut(s)	185, 1557
BsaJI	CCNNGG	9 cut(s)	183, 237, 315, 387, 699, 943, 1108, 1536, 1749
BsaWI	WCCGGW	2 cut(s)	67, 100
BsaXI	ACNNNNNCTCC	6 cut(s)	1097, 1127, 1554, 1584, 1808, 1838
Bsc4I	CCNNNNNNNGG	8 cut(s)	237, 238, 558, 1092, 1480, 1579, 1671, 1712
Bse118I	RCCGGY	2 cut(s)	167, 1971
Bse1I	ACTGG	8 cut(s)	441, 477, 499, 688, 1097, 1151, 1222, 1380
Bse21I	CCTNAGG	1 cut(s)	2013
Bse3DI	GCAATG	3 cut(s)	43, 158, 1371
BseAI	TCCGGA	1 cut(s)	67
BseBI	CCWGG	3 cut(s)	22, 389, 1659
BseDI	CCNNGG	9 cut(s)	183, 237, 315, 387, 699, 943, 1108, 1536, 1749
BseGI	GGATG	7 cut(s)	873, 1299, 1384, 1489, 1584, 1681, 1730
BseLI	CCNNNNNNNGG	8 cut(s)	237, 238, 558, 1092, 1480, 1579, 1671, 1712
BseMI	GCAATG	3 cut(s)	43, 158, 1371
BseMII	CTCAG	5 cut(s)	101, 611, 1613, 1852, 2027
BseNI	ACTGG	8 cut(s)	441, 477, 499, 688, 1097, 1151, 1222, 1380
BseRI	GAGGAG	1 cut(s)	651
BseX3I	CGGCCG	1 cut(s)	644
BseXI	GCAGC	8 cut(s)	107, 135, 225, 485, 1157, 1337, 1373, 1975
BseYI	CCCAGC	1 cut(s)	144
Bsh1236I	CGCG	3 cut(s)	253, 523, 1065
Bsh1285I	CGRYCG	3 cut(s)	312, 647, 666
BshFI	GGCC	9 cut(s)	303, 362, 392, 440, 646, 725, 1620, 1716, 1773
BshNI	GGYRCC	3 cut(s)	1462, 1661, 1692
BsiEI	CGRYCG	3 cut(s)	312, 647, 666
BsiHKCI	CYCGRG	2 cut(s)	183, 237
BsiSI	CCGG	7 cut(s)	68, 101, 168, 184, 232, 238, 1972
BslFI	GGGAC	3 cut(s)	530, 1436, 1767
BslI	CCNNNNNNNGG	8 cut(s)	237, 238, 558, 1092, 1480, 1579, 1671, 1712
BsmAI	GTCTC	4 cut(s)	36, 185, 1272, 1557
BsmBI	CGTCTC	1 cut(s)	36
BsmFI	GGGAC	3 cut(s)	530, 1436, 1767
BsmI	GAATGC	2 cut(s)	77, 1234
BsnI	GGCC	9 cut(s)	303, 362, 392, 440, 646, 725, 1620, 1716, 1773
Bso31I	GGTCTC	2 cut(s)	185, 1557
BsoBI	CYCGRG	2 cut(s)	183, 237
Bsp13I	TCCGGA	1 cut(s)	67
Bsp143I	GATC	9 cut(s)	132, 319, 1035, 1074, 1239, 1392, 1447, 1510, 1804
Bsp19I	CCATGG	2 cut(s)	943, 1749
BspANI	GGCC	9 cut(s)	303, 362, 392, 440, 646, 725, 1620, 1716, 1773
BspCNI	CTCAG	5 cut(s)	100, 610, 1614, 1851, 2026
BspEI	TCCGGA	1 cut(s)	67
BspFNI	CGCG	3 cut(s)	253, 523, 1065
BspMAI	CTGCAG	1 cut(s)	1355
BspPI	GGATC	7 cut(s)	127, 314, 327, 1030, 1069, 1082, 1387
BspQI	GCTCTTC	1 cut(s)	332
BspT107I	GGYRCC	3 cut(s)	1462, 1661, 1692
BspTNI	GGTCTC	2 cut(s)	185, 1557
BsrBI	CCGCTC	1 cut(s)	325
BsrDI	GCAATG	3 cut(s)	43, 158, 1371
BsrFI	RCCGGY	2 cut(s)	167, 1971
BsrI	ACTGG	8 cut(s)	441, 477, 499, 688, 1097, 1151, 1222, 1380
BssAI	RCCGGY	2 cut(s)	167, 1971
BssECI	CCNNGG	9 cut(s)	183, 237, 315, 387, 699, 943, 1108, 1536, 1749
BssMI	GATC	9 cut(s)	132, 319, 1035, 1074, 1239, 1392, 1447, 1510, 1804
BssNI	GRCGYC	4 cut(s)	381, 426, 573, 1909
BssSI	CACGAG	2 cut(s)	509, 1687
BssT1I	CCWWGG	5 cut(s)	699, 943, 1108, 1536, 1749
Bst2BI	CACGAG	2 cut(s)	509, 1687
Bst2UI	CCWGG	3 cut(s)	22, 389, 1659
Bst4CI	ACNGT	6 cut(s)	281, 406, 667, 885, 1158, 1308
Bst6I	CTCTTC	1 cut(s)	332
BstACI	GRCGYC	4 cut(s)	381, 426, 573, 1909
BstBAI	YACGTR	5 cut(s)	265, 299, 400, 417, 472
BstC8I	GCNNGC	3 cut(s)	82, 465, 1186
BstDEI	CTNAG	8 cut(s)	87, 597, 632, 1622, 1636, 1838, 1929, 2013
BstDSI	CCRYGG	3 cut(s)	315, 943, 1749
BstF5I	GGATG	7 cut(s)	873, 1299, 1384, 1489, 1584, 1681, 1730
BstFNI	CGCG	3 cut(s)	253, 523, 1065
BstH2I	RGCGCY	2 cut(s)	163, 1435
BstHHI	GCGC	3 cut(s)	162, 1067, 1434
BstKTI	GATC	9 cut(s)	135, 322, 1038, 1077, 1242, 1395, 1450, 1513, 1807
BstMAI	GTCTC	4 cut(s)	36, 185, 1272, 1557
BstMBI	GATC	9 cut(s)	132, 319, 1035, 1074, 1239, 1392, 1447, 1510, 1804
BstMCI	CGRYCG	3 cut(s)	312, 647, 666
BstMWI	GCNNNNNNNGC	6 cut(s)	81, 157, 619, 628, 1062, 1440
BstNI	CCWGG	3 cut(s)	22, 389, 1659
BstPAI	GACNNNNGTC	1 cut(s)	239
BstSCI	CCNGG	8 cut(s)	20, 182, 183, 230, 236, 237, 387, 1657
BstSFI	CTRYAG	1 cut(s)	1351
BstUI	CGCG	3 cut(s)	253, 523, 1065
BstV1I	GCAGC	8 cut(s)	107, 135, 225, 485, 1157, 1337, 1373, 1975
BstV2I	GAAGAC	1 cut(s)	89
BstX2I	RGATCY	3 cut(s)	319, 1074, 1447
BstYI	RGATCY	3 cut(s)	319, 1074, 1447
BstZI	CGGCCG	1 cut(s)	644
Bsu36I	CCTNAGG	1 cut(s)	2013
BsuRI	GGCC	9 cut(s)	303, 362, 392, 440, 646, 725, 1620, 1716, 1773
BtgI	CCRYGG	3 cut(s)	315, 943, 1749
BtgZI	GCGATG	2 cut(s)	325, 784
BtsCI	GGATG	7 cut(s)	873, 1299, 1384, 1489, 1584, 1681, 1730
BtsIMutI	CAGTG	3 cut(s)	484, 890, 1005
Cac8I	GCNNGC	3 cut(s)	82, 465, 1186
CfoI	GCGC	3 cut(s)	162, 1067, 1434
Cfr10I	RCCGGY	2 cut(s)	167, 1971
Cfr13I	GGNCC	7 cut(s)	202, 234, 360, 439, 517, 1754, 2017
Cfr9I	CCCGGG	2 cut(s)	183, 237
CseI	GACGC	4 cut(s)	434, 1608, 1787, 1898
CsiI	ACCWGGT	1 cut(s)	1657
Csp6I	GTAC	2 cut(s)	1463, 1816
CviAII	CATG	8 cut(s)	376, 544, 944, 1243, 1282, 1642, 1750, 1993
CviQI	GTAC	2 cut(s)	1463, 1816
DdeI	CTNAG	8 cut(s)	87, 597, 632, 1622, 1636, 1838, 1929, 2013
DpnI	GATC	9 cut(s)	134, 321, 1037, 1076, 1241, 1394, 1449, 1512, 1806
DpnII	GATC	9 cut(s)	132, 319, 1035, 1074, 1239, 1392, 1447, 1510, 1804
DraI	TTTAAA	1 cut(s)	1101
DraIII	CACNNNGTG	1 cut(s)	860
DrdI	GACNNNNNNGTC	1 cut(s)	578
DseDI	GACNNNNNNGTC	1 cut(s)	578
EaeI	YGGCCR	2 cut(s)	644, 723
EagI	CGGCCG	1 cut(s)	644
Eam1104I	CTCTTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	332
EciI	GGCGGA	3 cut(s)	154, 1688, 1723
EclXI	CGGCCG	1 cut(s)	644
Eco130I	CCWWGG	5 cut(s)	699, 943, 1108, 1536, 1749
Eco147I	AGGCCT	1 cut(s)	1620
Eco31I	GGTCTC	2 cut(s)	185, 1557
Eco47I	GGWCC	5 cut(s)	202, 234, 517, 1754, 2017
Eco47III	AGCGCT	1 cut(s)	161
Eco52I	CGGCCG	1 cut(s)	644
Eco57I	CTGAAG	3 cut(s)	437, 538, 978
Eco72I	CACGTG	2 cut(s)	299, 417
Eco81I	CCTNAGG	1 cut(s)	2013
Eco88I	CYCGRG	2 cut(s)	183, 237
EcoO109I	RGGNCCY	3 cut(s)	360, 517, 1754
EcoRII	CCWGG	3 cut(s)	20, 387, 1657
EcoT14I	CCWWGG	5 cut(s)	699, 943, 1108, 1536, 1749
EcoT22I	ATGCAT	2 cut(s)	875, 1299
ErhI	CCWWGG	5 cut(s)	699, 943, 1108, 1536, 1749
Esp3I	CGTCTC	1 cut(s)	36
FaeI	CATG	8 cut(s)	379, 547, 947, 1246, 1285, 1645, 1753, 1996
FaqI	GGGAC	3 cut(s)	530, 1436, 1767
FatI	CATG	8 cut(s)	375, 543, 943, 1242, 1281, 1641, 1749, 1992
FauI	CCCGC	6 cut(s)	85, 125, 258, 494, 528, 1177
FauNDI	CATATG	3 cut(s)	763, 1505, 2022
FbaI	TGATCA	1 cut(s)	1804
FblI	GTMKAC	2 cut(s)	705, 1303
FokI	GGATG	7 cut(s)	860, 1306, 1391, 1496, 1591, 1688, 1717
FspBI	CTAG	6 cut(s)	305, 1109, 1445, 1514, 1652, 2029
GlaI	GCGC	3 cut(s)	161, 1066, 1433
GsaI	CCCAGC	1 cut(s)	148
GsuI	CTGGAG	2 cut(s)	4, 1810
HaeII	RGCGCY	2 cut(s)	163, 1435
HaeIII	GGCC	9 cut(s)	303, 362, 392, 440, 646, 725, 1620, 1716, 1773
HapII	CCGG	7 cut(s)	68, 101, 168, 184, 232, 238, 1972
HgaI	GACGC	4 cut(s)	434, 1608, 1787, 1898
HhaI	GCGC	3 cut(s)	162, 1067, 1434
Hin1I	GRCGYC	4 cut(s)	381, 426, 573, 1909
Hin1II	CATG	8 cut(s)	379, 547, 947, 1246, 1285, 1645, 1753, 1996
Hin6I	GCGC	3 cut(s)	160, 1065, 1432
HinP1I	GCGC	3 cut(s)	160, 1065, 1432
HincII	GTYRAC	1 cut(s)	964
HindII	GTYRAC	1 cut(s)	964
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	4 cut(s)	47, 482, 1413, 1492
HpaI	GTTAAC	1 cut(s)	964
HpaII	CCGG	7 cut(s)	68, 101, 168, 184, 232, 238, 1972
HphI	GGTGA	3 cut(s)	502, 685, 1553
Hpy166II	GTNNAC	6 cut(s)	693, 706, 964, 1304, 1523, 1598
Hpy188I	TCNGA	5 cut(s)	600, 958, 1418, 1804, 1841
Hpy188III	TCNNGA	7 cut(s)	68, 422, 1277, 1406, 1456, 1496, 2015
Hpy8I	GTNNAC	6 cut(s)	693, 706, 964, 1304, 1523, 1598
Hpy99I	CGWCG	4 cut(s)	202, 386, 1781, 1914
HpyAV	CCTTC	9 cut(s)	403, 562, 688, 1049, 1413, 1453, 1553, 1675, 1730
HpyCH4III	ACNGT	6 cut(s)	281, 406, 667, 885, 1158, 1308
HpyF10VI	GCNNNNNNNGC	6 cut(s)	81, 157, 619, 628, 1062, 1440
HpyF3I	CTNAG	8 cut(s)	87, 597, 632, 1622, 1636, 1838, 1929, 2013
Hsp92I	GRCGYC	4 cut(s)	381, 426, 573, 1909
Hsp92II	CATG	8 cut(s)	379, 547, 947, 1246, 1285, 1645, 1753, 1996
HspAI	GCGC	3 cut(s)	160, 1065, 1432
KflI	GGGWCCC	1 cut(s)	517
Kpn2I	TCCGGA	1 cut(s)	67
KpnI	GGTACC	1 cut(s)	1466
Ksp22I	TGATCA	1 cut(s)	1804
KspAI	GTTAAC	1 cut(s)	964
Kzo9I	GATC	9 cut(s)	132, 319, 1035, 1074, 1239, 1392, 1447, 1510, 1804
LguI	GCTCTTC	1 cut(s)	332
LmnI	GCTCC	3 cut(s)	157, 167, 1118
Lsp1109I	GCAGC	8 cut(s)	107, 135, 225, 485, 1157, 1337, 1373, 1975
LweI	GCATC	4 cut(s)	882, 1284, 1306, 1324
MabI	ACCWGGT	1 cut(s)	1657
MaeI	CTAG	6 cut(s)	305, 1109, 1445, 1514, 1652, 2029
MaeIII	GTNAC	9 cut(s)	6, 125, 400, 490, 742, 749, 818, 1142, 1913
MalI	GATC	9 cut(s)	134, 321, 1037, 1076, 1241, 1394, 1449, 1512, 1806
MbiI	CCGCTC	1 cut(s)	325
MboI	GATC	9 cut(s)	132, 319, 1035, 1074, 1239, 1392, 1447, 1510, 1804
MboII	GAAGA	6 cut(s)	89, 165, 319, 748, 1267, 1781
MflI	RGATCY	3 cut(s)	319, 1074, 1447
MlsI	TGGCCA	1 cut(s)	725
MluNI	TGGCCA	1 cut(s)	725
MlyI	GAGTC	3 cut(s)	41, 491, 1407
MmeI	TCCRAC	3 cut(s)	808, 1461, 1964
Mox20I	TGGCCA	1 cut(s)	725
Mph1103I	ATGCAT	2 cut(s)	875, 1299
MroI	TCCGGA	1 cut(s)	67
MroXI	GAANNNNTTC	2 cut(s)	551, 952
MscI	TGGCCA	1 cut(s)	725
MseI	TTAA	6 cut(s)	792, 809, 897, 963, 1100, 1977
MslI	CAYNNNNRTG	2 cut(s)	1646, 1748
Msp20I	TGGCCA	1 cut(s)	725
MspA1I	CMGCKG	3 cut(s)	120, 148, 1468
MspI	CCGG	7 cut(s)	68, 101, 168, 184, 232, 238, 1972
MspR9I	CCNGG	8 cut(s)	22, 184, 185, 232, 238, 239, 389, 1659
Mva1269I	GAATGC	2 cut(s)	77, 1234
MvaI	CCWGG	3 cut(s)	22, 389, 1659
MvnI	CGCG	3 cut(s)	253, 523, 1065
MwoI	GCNNNNNNNGC	6 cut(s)	81, 157, 619, 628, 1062, 1440
NciI	CCSGG	5 cut(s)	184, 185, 232, 238, 239
NcoI	CCATGG	2 cut(s)	943, 1749
NdeI	CATATG	3 cut(s)	763, 1505, 2022
NdeII	GATC	9 cut(s)	132, 319, 1035, 1074, 1239, 1392, 1447, 1510, 1804
NlaIII	CATG	8 cut(s)	379, 547, 947, 1246, 1285, 1645, 1753, 1996
NmuCI	GTSAC	8 cut(s)	6, 125, 400, 490, 742, 818, 1142, 1913
NsiI	ATGCAT	2 cut(s)	875, 1299
PceI	AGGCCT	1 cut(s)	1620
PciSI	GCTCTTC	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	1 cut(s)	1606
PctI	GAATGC	2 cut(s)	77, 1234
PdmI	GAANNNNTTC	2 cut(s)	551, 952
PfeI	GAWTC	1 cut(s)	1492
PflFI	GACNNNGTC	1 cut(s)	1568
PflMI	CCANNNNNTGG	3 cut(s)	1092, 1480, 1579
PleI	GAGTC	3 cut(s)	41, 490, 1407
PmaCI	CACGTG	2 cut(s)	299, 417
PmlI	CACGTG	2 cut(s)	299, 417
PpsI	GAGTC	3 cut(s)	41, 490, 1407
Ppu21I	YACGTR	5 cut(s)	265, 299, 400, 417, 472
PpuMI	RGGWCCY	2 cut(s)	517, 1754
PshAI	GACNNNNGTC	1 cut(s)	239
Psp5II	RGGWCCY	2 cut(s)	517, 1754
Psp6I	CCWGG	3 cut(s)	20, 387, 1657
PspCI	CACGTG	2 cut(s)	299, 417
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	3 cut(s)	20, 387, 1657
PspPI	GGNCC	7 cut(s)	202, 234, 360, 439, 517, 1754, 2017
PspPPI	RGGWCCY	2 cut(s)	517, 1754
PstI	CTGCAG	1 cut(s)	1355
PsuI	RGATCY	3 cut(s)	319, 1074, 1447
PsyI	GACNNNGTC	1 cut(s)	1568
PvuII	CAGCTG	1 cut(s)	148
RsaI	GTAC	2 cut(s)	1464, 1817
RsaNI	GTAC	2 cut(s)	1463, 1816
RseI	CAYNNNNRTG	2 cut(s)	1646, 1748
SapI	GCTCTTC	1 cut(s)	332
SaqAI	TTAA	6 cut(s)	792, 809, 897, 963, 1100, 1977
Sau3AI	GATC	9 cut(s)	132, 319, 1035, 1074, 1239, 1392, 1447, 1510, 1804
Sau96I	GGNCC	7 cut(s)	202, 234, 360, 439, 517, 1754, 2017
SchI	GAGTC	3 cut(s)	41, 491, 1407
ScrFI	CCNGG	8 cut(s)	22, 184, 185, 232, 238, 239, 389, 1659
SexAI	ACCWGGT	1 cut(s)	1657
SfaNI	GCATC	4 cut(s)	882, 1284, 1306, 1324
SfcI	CTRYAG	1 cut(s)	1351
SinI	GGWCC	5 cut(s)	202, 234, 517, 1754, 2017
SmaI	CCCGGG	2 cut(s)	185, 239
SmiMI	CAYNNNNRTG	2 cut(s)	1646, 1748
SmlI	CTYRAG	2 cut(s)	925, 1189
SmoI	CTYRAG	2 cut(s)	925, 1189
SseBI	AGGCCT	1 cut(s)	1620
SspI	AATATT	1 cut(s)	936
SspMI	CTAG	6 cut(s)	305, 1109, 1445, 1514, 1652, 2029
StuI	AGGCCT	1 cut(s)	1620
StyD4I	CCNGG	8 cut(s)	20, 182, 183, 230, 236, 237, 387, 1657
StyI	CCWWGG	5 cut(s)	699, 943, 1108, 1536, 1749
TaaI	ACNGT	6 cut(s)	281, 406, 667, 885, 1158, 1308
TaqI	TCGA	6 cut(s)	246, 485, 1238, 1276, 1336, 1776
TauI	GCSGC	2 cut(s)	1315, 1719
TfiI	GAWTC	1 cut(s)	1492
Tru1I	TTAA	6 cut(s)	792, 809, 897, 963, 1100, 1977
Tru9I	TTAA	6 cut(s)	792, 809, 897, 963, 1100, 1977
TscAI	CASTG	3 cut(s)	484, 890, 1012
TseFI	GTSAC	8 cut(s)	6, 125, 400, 490, 742, 818, 1142, 1913
TseI	GCWGC	8 cut(s)	120, 148, 213, 498, 1170, 1350, 1361, 1988
Tsp45I	GTSAC	8 cut(s)	6, 125, 400, 490, 742, 818, 1142, 1913
TspDTI	ATGAA	1 cut(s)	560
TspGWI	ACGGA	4 cut(s)	215, 1035, 1508, 1858
TspMI	CCCGGG	2 cut(s)	183, 237
TspRI	CASTG	3 cut(s)	484, 890, 1012
Tth111I	GACNNNGTC	1 cut(s)	1568
Van91I	CCANNNNNTGG	3 cut(s)	1092, 1480, 1579
VpaK11BI	GGWCC	5 cut(s)	202, 234, 517, 1754, 2017
XapI	RAATTY	6 cut(s)	834, 949, 969, 1010, 1023, 1820
XcmI	CCANNNNNNNNNTGG	2 cut(s)	484, 1953
XmaI	CCCGGG	2 cut(s)	183, 237
XmaJI	CCTAGG	1 cut(s)	1108
XmiI	GTMKAC	2 cut(s)	705, 1303
XmnI	GAANNNNTTC	2 cut(s)	551, 952
XspI	CTAG	6 cut(s)	305, 1109, 1445, 1514, 1652, 2029
ZraI	GACGTC	2 cut(s)	382, 574
Zsp2I	ATGCAT	2 cut(s)	875, 1299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.