Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0003871

Physical Location & Seq

Genomic Coordinates Reverse (-)

3306299 .. 3306757

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g05130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCTATTTATCGTACGAGGGCGCATTAAGCGGACCCAAGGCCTAAGCAAAGGCATGGTGGGAACCAATGTGCTCGAACCGGGAGGGTTTTTTGGCGATGAGCTGCTCTCCTGGTGCCTTCGCCGGCCATTCTTGGACCGCCTTCCAGCCTCATCCGCAACATTCACCTGCATTGAATCAACAGAAGCATTTGGCCTCAATGCAGTCGATCTGAGATACATGACGGATCACTTCCGCTACAAATTTGCCAACGAAAGGCTTAAGCGAACGGCGAGATACTACTCTTCAAATTGGAGAACATGGGCAGCGGTGAATATACAATTCGCTTGGCGCCGGTACAGGTTGAGGACTAATCGAGGTCCCGTGATTCCTGTGAATCCAAATGGAAGCTCTGAGAGGAAGCTGTTGCAGTATGCTGCAATGTTCTTGTCACTTAGGCCACATGATCACCTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

153

Amino Acids

17.74

Weight (kDa)

10.52

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15410 AT5G15410
fragaria_vesca	FvH4_6g47520 FvH4_6g47520 FvH4_7g26890
malus_domestica	MD07G1248200.v1.1 MD09G1061000.v1.1 MD17G1056400.v1.1
prunus_persica	Prupe.2G272100_v2.0.a1 Prupe.3G259100_v2.0.a1
pyrus_communis	pycom07g22190 pycom111g05130 pycom17g05550
rosa_chinensis	RchiOBHm_Chr1g0373561 RchiOBHm_Chr2g0166581
rosa_laevigata	RLG00000021630 RLG00000026815
rosa_multiflora	Rmu_sc0002860.1_g000003 Rmu_sc0008222.1_g000009
rosa_roxburghii	Rroxscaffold_2G00084740 Rroxscaffold_4G00284140
rosa_rugosa	Rorug01G0378300 Rorug02G0524300 Rorug02G0524400
rosa_samantha	Rh1AG387700 Rh1BG352000 Rh1CG364700 Rh1DG382400 Rh2AG590200 Rh2BG602300 Rh2CG573000 Rh2DG612900
rosa_wichuraiana	Rw1G034770 Rw2G049200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	176
Acc36I	ACCTGC	1 cut(s)	176
AccB1I	GGYRCC	2 cut(s)	114, 330
AciI	CCGC	5 cut(s)	31, 139, 156, 235, 308
AclWI	GGATC	1 cut(s)	234
AcoI	YGGCCR	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	242
AcyI	GRCGYC	1 cut(s)	331
AfaI	GTAC	2 cut(s)	15, 338
AfiI	CCNNNNNNNGG	1 cut(s)	255
AflII	CTTAAG	1 cut(s)	260
AgsI	TTSAA	2 cut(s)	176, 288
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	3 cut(s)	103, 390, 403
AluI	AGCT	3 cut(s)	103, 390, 403
Alw21I	GWGCWC	1 cut(s)	75
AlwI	GGATC	1 cut(s)	234
AoxI	GGCC	4 cut(s)	40, 125, 193, 437
ApeKI	GCWGC	3 cut(s)	103, 305, 416
ApoI	RAATTY	1 cut(s)	242
AspLEI	GCGC	2 cut(s)	24, 333
AspS9I	GGNCC	3 cut(s)	33, 136, 359
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	3 cut(s)	157, 322, 440
AvaII	GGWCC	3 cut(s)	33, 136, 359
BanI	GGYRCC	2 cut(s)	114, 330
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	3 cut(s)	90, 317, 403
BceAI	ACGGC	1 cut(s)	285
BciT130I	CCWGG	1 cut(s)	112
BclI	TGATCA	1 cut(s)	445
BcnI	CCSGG	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	334
BfrI	CTTAAG	1 cut(s)	260
BfuAI	ACCTGC	1 cut(s)	176
BisI	GCNGC	3 cut(s)	104, 306, 417
BlsI	GCNGC	3 cut(s)	105, 307, 418
Bme1390I	CCNGG	2 cut(s)	81, 112
Bme18I	GGWCC	3 cut(s)	33, 136, 359
BmgT120I	GGNCC	3 cut(s)	33, 136, 359
BmiI	GGNNCC	5 cut(s)	35, 64, 116, 332, 361
BmrFI	CCNGG	2 cut(s)	81, 112
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
Bpu10I	CCTNAGC	1 cut(s)	44
BpuMI	CCSGG	1 cut(s)	81
BsaHI	GRCGYC	1 cut(s)	331
BsaJI	CCNNGG	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse118I	RCCGGY	2 cut(s)	123, 333
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	1 cut(s)	152
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	2 cut(s)	203, 384
BseXI	GCAGC	3 cut(s)	90, 317, 403
BshFI	GGCC	4 cut(s)	42, 127, 195, 439
BshNI	GGYRCC	2 cut(s)	114, 330
BsiHKAI	GWGCWC	1 cut(s)	75
BsiSI	CCGG	3 cut(s)	80, 124, 334
BsiWI	CGTACG	1 cut(s)	13
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	345
BsnI	GGCC	4 cut(s)	42, 127, 195, 439
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	3 cut(s)	208, 226, 445
BspACI	CCGC	5 cut(s)	31, 139, 156, 235, 308
BspANI	GGCC	4 cut(s)	42, 127, 195, 439
BspCNI	CTCAG	2 cut(s)	204, 385
BspLI	GGNNCC	5 cut(s)	35, 64, 116, 332, 361
BspMI	ACCTGC	1 cut(s)	176
BspPI	GGATC	1 cut(s)	234
BspT107I	GGYRCC	2 cut(s)	114, 330
BspTI	CTTAAG	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	426
BsrFI	RCCGGY	2 cut(s)	123, 333
BssAI	RCCGGY	2 cut(s)	123, 333
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	3 cut(s)	208, 226, 445
BssNI	GRCGYC	1 cut(s)	331
BssT1I	CCWWGG	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	289
BstACI	GRCGYC	1 cut(s)	331
BstAFI	CTTAAG	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	4 cut(s)	44, 212, 393, 434
BstF5I	GGATG	1 cut(s)	152
BstH2I	RGCGCY	1 cut(s)	334
BstHHI	GCGC	2 cut(s)	24, 333
BstKTI	GATC	3 cut(s)	211, 229, 448
BstMBI	GATC	3 cut(s)	208, 226, 445
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 155
BstNI	CCWGG	1 cut(s)	112
BstSCI	CCNGG	2 cut(s)	79, 110
BstV1I	GCAGC	3 cut(s)	90, 317, 403
BsuRI	GGCC	4 cut(s)	42, 127, 195, 439
BtgZI	GCGATG	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	152
BveI	ACCTGC	1 cut(s)	176
Cac8I	GCNNGC	1 cut(s)	125
CfoI	GCGC	2 cut(s)	24, 333
Cfr10I	RCCGGY	2 cut(s)	123, 333
Cfr13I	GGNCC	3 cut(s)	33, 136, 359
Csp6I	GTAC	2 cut(s)	14, 337
CviAII	CATG	4 cut(s)	55, 220, 300, 443
CviJI	RGCY	9 cut(s)	42, 103, 127, 149, 195, 259, 390, 403, 439
CviKI_1	RGCY	9 cut(s)	42, 103, 127, 149, 195, 259, 390, 403, 439
CviQI	GTAC	2 cut(s)	14, 337
DdeI	CTNAG	4 cut(s)	44, 212, 393, 434
DinI	GGCGCC	1 cut(s)	332
DpnI	GATC	3 cut(s)	210, 228, 447
DpnII	GATC	3 cut(s)	208, 226, 445
EaeI	YGGCCR	1 cut(s)	125
Eam1104I	CTCTTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	37
Eco147I	AGGCCT	1 cut(s)	42
Eco47I	GGWCC	3 cut(s)	33, 136, 359
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	110
EcoT14I	CCWWGG	1 cut(s)	37
EgeI	GGCGCC	1 cut(s)	332
EheI	GGCGCC	1 cut(s)	332
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	4 cut(s)	58, 223, 303, 446
FaiI	YATR	6 cut(s)	56, 221, 301, 317, 414, 444
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	4 cut(s)	54, 219, 299, 442
FbaI	TGATCA	1 cut(s)	445
Fnu4HI	GCNGC	3 cut(s)	104, 306, 417
FokI	GGATG	1 cut(s)	139
Fsp4HI	GCNGC	3 cut(s)	104, 306, 417
GlaI	GCGC	2 cut(s)	23, 332
GluI	GCNGC	3 cut(s)	104, 306, 417
HaeII	RGCGCY	1 cut(s)	334
HaeIII	GGCC	4 cut(s)	42, 127, 195, 439
HapII	CCGG	3 cut(s)	80, 124, 334
HhaI	GCGC	2 cut(s)	24, 333
Hin1I	GRCGYC	1 cut(s)	331
Hin1II	CATG	4 cut(s)	58, 223, 303, 446
Hin6I	GCGC	2 cut(s)	22, 331
HinP1I	GCGC	2 cut(s)	22, 331
HinfI	GANTC	3 cut(s)	176, 367, 376
HpaII	CCGG	3 cut(s)	80, 124, 334
HphI	GGTGA	3 cut(s)	157, 322, 440
Hpy188I	TCNGA	2 cut(s)	213, 394
HpyAV	CCTTC	2 cut(s)	128, 152
HpyCH4V	TGCA	4 cut(s)	171, 203, 409, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 155
HpyF3I	CTNAG	4 cut(s)	44, 212, 393, 434
Hsp92I	GRCGYC	1 cut(s)	331
Hsp92II	CATG	4 cut(s)	58, 223, 303, 446
HspAI	GCGC	2 cut(s)	22, 331
KasI	GGCGCC	1 cut(s)	330
KroI	GCCGGC	1 cut(s)	123
KroNI	GCCGGC	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	3 cut(s)	208, 226, 445
LpnPI	CCDG	9 cut(s)	93, 97, 124, 137, 159, 181, 325, 347, 384
Lsp1109I	GCAGC	3 cut(s)	90, 317, 403
MaeIII	GTNAC	1 cut(s)	429
MalI	GATC	3 cut(s)	210, 228, 447
MboI	GATC	3 cut(s)	208, 226, 445
MboII	GAAGA	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	3 cut(s)	242, 289, 320
Mly113I	GGCGCC	1 cut(s)	331
MnlI	CCTC	7 cut(s)	11, 77, 160, 206, 339, 350, 390
MroNI	GCCGGC	1 cut(s)	123
MseI	TTAA	2 cut(s)	27, 261
MspA1I	CMGCKG	1 cut(s)	308
MspCI	CTTAAG	1 cut(s)	260
MspI	CCGG	3 cut(s)	80, 124, 334
MspR9I	CCNGG	2 cut(s)	81, 112
MvaI	CCWGG	1 cut(s)	112
MwoI	GCNNNNNNNGC	2 cut(s)	28, 155
NaeI	GCCGGC	1 cut(s)	125
NarI	GGCGCC	1 cut(s)	331
NciI	CCSGG	1 cut(s)	81
NdeII	GATC	3 cut(s)	208, 226, 445
NgoMIV	GCCGGC	1 cut(s)	123
NlaIII	CATG	4 cut(s)	58, 223, 303, 446
NlaIV	GGNNCC	5 cut(s)	35, 64, 116, 332, 361
NmuCI	GTSAC	1 cut(s)	429
PaqCI	CACCTGC	1 cut(s)	176
PceI	AGGCCT	1 cut(s)	42
PdiI	GCCGGC	1 cut(s)	125
PfeI	GAWTC	3 cut(s)	176, 367, 376
Pfl23II	CGTACG	1 cut(s)	13
PkrI	GCNGC	3 cut(s)	105, 307, 418
PluTI	GGCGCC	1 cut(s)	334
PpuMI	RGGWCCY	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspLI	CGTACG	1 cut(s)	13
PspN4I	GGNNCC	5 cut(s)	35, 64, 116, 332, 361
PspPI	GGNCC	3 cut(s)	33, 136, 359
PspPPI	RGGWCCY	1 cut(s)	359
RsaI	GTAC	2 cut(s)	15, 338
RsaNI	GTAC	2 cut(s)	14, 337
SaqAI	TTAA	2 cut(s)	27, 261
SatI	GCNGC	3 cut(s)	104, 306, 417
Sau3AI	GATC	3 cut(s)	208, 226, 445
Sau96I	GGNCC	3 cut(s)	33, 136, 359
ScrFI	CCNGG	2 cut(s)	81, 112
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	7 cut(s)	105, 170, 344, 361, 392, 405, 453
SfoI	GGCGCC	1 cut(s)	332
SinI	GGWCC	3 cut(s)	33, 136, 359
SmlI	CTYRAG	2 cut(s)	260, 452
SmoI	CTYRAG	2 cut(s)	260, 452
Sse9I	AATT	3 cut(s)	242, 289, 320
SseBI	AGGCCT	1 cut(s)	42
SsiI	CCGC	5 cut(s)	31, 139, 156, 235, 308
SspDI	GGCGCC	1 cut(s)	330
StuI	AGGCCT	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	79, 110
StyI	CCWWGG	1 cut(s)	37
TaqI	TCGA	3 cut(s)	75, 207, 355
TasI	AATT	3 cut(s)	242, 289, 320
TfiI	GAWTC	3 cut(s)	176, 367, 376
Tru1I	TTAA	2 cut(s)	27, 261
Tru9I	TTAA	2 cut(s)	27, 261
TseFI	GTSAC	1 cut(s)	429
TseI	GCWGC	3 cut(s)	103, 305, 416
Tsp45I	GTSAC	1 cut(s)	429
TspGWI	ACGGA	1 cut(s)	239
Vha464I	CTTAAG	1 cut(s)	260
VpaK11BI	GGWCC	3 cut(s)	33, 136, 359
XapI	RAATTY	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.