FvH4_6g52910

TRAM, LAG1 and CLN8 homology domains.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004398
Physical Location & Seq
Reverse (-)
38851453 .. 38856163
4711 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52910.t2

Sequence Viewer

Length: 618 bp
ATGAAAAGAGTGACACTCATTTTCAGAATTCAAATTGAGTCAGAGAGAGAGAGAGAGAGAGAGAGTGTTCTAGGGTTTCAAATGGAAACACAGAGCCCAATAATCCTCCCACCCCTCCCAATCCTCTTCTCCTTCTTCTTCACCATCTACCTCATCGCCTACTTCATCGTCTTCCGCACATGGAGCCCCAAGATCCGACCCGAAGCCTCCAGCTGTCTCATCTCCCTCGCCCACGGCACCCCCGCCGTCTTCTTCTCCTCCTACGCCCTCCTCTCCGATCCCTCCACCGGCTTCGCCGCCGCCAACACGCGCCTCCAGAACTCCGTCCTCGAATTCAGCGTCGCCTATTTCCTCATGGATCTTCTCCACTACCTAATCTTCTTCCCCGGCGACGTCCTCTTCATCGGCCACCACCTCGCCACGCTCTTCGTCTTCCTCACGTGCCGCTACGTCGCCTCACGCGGCGCGTTGGCCGTCCTGGGGCTCCTGATCCTCGCCGAGGTCACGAGCCTCTGCCAGAACGTGTGGACGCTCGCCAACGCGCGGCGGAGGGAGGTGGAGTTCGCCGCCAAGGTCTACTTAGAGTGCCCTCTTGCTGTCATGTTGGATTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF573 TRAM_LAG1_CLN8

Protein Analysis

206

Amino Acids

23.36

Weight (kDa)

6.9

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAM_LAG1_CLN8 PF03798 70 - 193 5e-12 TLC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 396
AccB1I GGYRCC 1 cut(s) 236
AccI GTMKAC 1 cut(s) 576
AccII CGCG 5 cut(s) 310, 462, 467, 542, 544
AciI CCGC 9 cut(s) 175, 243, 297, 300, 445, 462, 544, 547, 567
AclWI GGATC 4 cut(s) 187, 272, 366, 484
AcoI YGGCCR 2 cut(s) 406, 471
AcsI RAATTY 2 cut(s) 27, 332
AcvI CACGTG 1 cut(s) 441
AcyI GRCGYC 1 cut(s) 393
AfiI CCNNNNNNNGG 4 cut(s) 287, 480, 499, 543
AflIII ACRYGT 1 cut(s) 522
AgsI TTSAA 2 cut(s) 32, 80
AjnI CCWGG 1 cut(s) 477
AloI GAACNNNNNNTCC 2 cut(s) 545, 577
AluBI AGCT 1 cut(s) 213
AluI AGCT 1 cut(s) 213
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 4 cut(s) 187, 272, 366, 484
AoxI GGCC 2 cut(s) 406, 471
ApoI RAATTY 2 cut(s) 27, 332
ArsI GACNNNNNNTTYG 2 cut(s) 324, 356
AspLEI GCGC 3 cut(s) 312, 467, 544
AsuC2I CCSGG 1 cut(s) 387
AsuHPI GGTGA 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 590
BanI GGYRCC 1 cut(s) 236
BanII GRGCYC 3 cut(s) 98, 188, 486
BauI CACGAG 1 cut(s) 505
BbrPI CACGTG 1 cut(s) 441
BbsI GAAGAC 3 cut(s) 163, 241, 424
BccI CCATC 1 cut(s) 152
BceAI ACGGC 3 cut(s) 230, 250, 458
BciT130I CCWGG 1 cut(s) 479
BcnI CCSGG 1 cut(s) 387
BcoDI GTCTC 1 cut(s) 221
BfaI CTAG 1 cut(s) 71
BisI GCNGC 6 cut(s) 297, 300, 445, 463, 545, 567
BlsI GCNGC 6 cut(s) 298, 301, 446, 464, 546, 568
Bme1390I CCNGG 2 cut(s) 387, 479
BmiI GGNNCC 3 cut(s) 185, 238, 485
BmrFI CCNGG 2 cut(s) 387, 479
BpiI GAAGAC 3 cut(s) 163, 241, 424
BplI GAGNNNNNCTC 1 cut(s) 32
BpmI CTGGAG 2 cut(s) 193, 299
BpuMI CCSGG 1 cut(s) 387
BsaAI YACGTR 1 cut(s) 441
BsaHI GRCGYC 1 cut(s) 393
BsaJI CCNNGG 5 cut(s) 232, 385, 478, 498, 570
BsaXI ACNNNNNCTCC 2 cut(s) 545, 575
Bsc4I CCNNNNNNNGG 4 cut(s) 287, 480, 499, 543
Bse118I RCCGGY 1 cut(s) 287
BseBI CCWGG 1 cut(s) 479
BseDI CCNNGG 5 cut(s) 232, 385, 478, 498, 570
BseLI CCNNNNNNNGG 4 cut(s) 287, 480, 499, 543
BseRI GAGGAG 2 cut(s) 247, 260
BseSI GKGCMC 1 cut(s) 590
Bsh1236I CGCG 5 cut(s) 310, 462, 467, 542, 544
BshFI GGCC 2 cut(s) 408, 473
BshNI GGYRCC 1 cut(s) 236
BsiSI CCGG 2 cut(s) 288, 387
BslI CCNNNNNNNGG 4 cut(s) 287, 480, 499, 543
BsmAI GTCTC 1 cut(s) 221
BsnI GGCC 2 cut(s) 408, 473
Bsp1286I GDGCHC 4 cut(s) 98, 188, 486, 590
Bsp143I GATC 4 cut(s) 192, 277, 358, 489
BspACI CCGC 9 cut(s) 175, 243, 297, 300, 445, 462, 544, 547, 567
BspANI GGCC 2 cut(s) 408, 473
BspFNI CGCG 5 cut(s) 310, 462, 467, 542, 544
BspLI GGNNCC 3 cut(s) 185, 238, 485
BspPI GGATC 4 cut(s) 187, 272, 366, 484
BspQI GCTCTTC 1 cut(s) 431
BspT107I GGYRCC 1 cut(s) 236
BsrFI RCCGGY 1 cut(s) 287
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 5 cut(s) 232, 385, 478, 498, 570
BssMI GATC 4 cut(s) 192, 277, 358, 489
BssNI GRCGYC 1 cut(s) 393
BssSI CACGAG 1 cut(s) 505
BssT1I CCWWGG 1 cut(s) 570
Bst2BI CACGAG 1 cut(s) 505
Bst2UI CCWGG 1 cut(s) 479
Bst6I CTCTTC 3 cut(s) 131, 404, 431
BstACI GRCGYC 1 cut(s) 393
BstBAI YACGTR 1 cut(s) 441
BstC8I GCNNGC 1 cut(s) 534
BstDEI CTNAG 1 cut(s) 580
BstDSI CCRYGG 1 cut(s) 232
BstENI CCTNNNNNAGG 1 cut(s) 497
BstFNI CGCG 5 cut(s) 310, 462, 467, 542, 544
BstHHI GCGC 3 cut(s) 312, 467, 544
BstKTI GATC 4 cut(s) 195, 280, 361, 492
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 4 cut(s) 192, 277, 358, 489
BstMWI GCNNNNNNNGC 1 cut(s) 183
BstNI CCWGG 1 cut(s) 479
BstSCI CCNGG 2 cut(s) 385, 477
BstSLI GKGCMC 1 cut(s) 590
BstUI CGCG 5 cut(s) 310, 462, 467, 542, 544
BstV2I GAAGAC 3 cut(s) 163, 241, 424
BstX2I RGATCY 2 cut(s) 192, 358
BstYI RGATCY 2 cut(s) 192, 358
BsuRI GGCC 2 cut(s) 408, 473
BtgI CCRYGG 1 cut(s) 232
BtgZI GCGATG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 534
CfoI GCGC 3 cut(s) 312, 467, 544
Cfr10I RCCGGY 1 cut(s) 287
CseI GACGC 2 cut(s) 328, 538
CviAII CATG 3 cut(s) 180, 355, 601
CviJI RGCY 9 cut(s) 96, 186, 206, 213, 291, 408, 473, 484, 510
CviKI_1 RGCY 9 cut(s) 96, 186, 206, 213, 291, 408, 473, 484, 510
DdeI CTNAG 1 cut(s) 580
DpnI GATC 4 cut(s) 194, 279, 360, 491
DpnII GATC 4 cut(s) 192, 277, 358, 489
EaeI YGGCCR 2 cut(s) 406, 471
Eam1104I CTCTTC 3 cut(s) 131, 404, 431
EarI CTCTTC 3 cut(s) 131, 404, 431
EciI GGCGGA 1 cut(s) 562
Eco130I CCWWGG 1 cut(s) 570
Eco24I GRGCYC 3 cut(s) 98, 188, 486
Eco72I CACGTG 1 cut(s) 441
EcoNI CCTNNNNNAGG 1 cut(s) 497
EcoRI GAATTC 2 cut(s) 27, 332
EcoRII CCWGG 1 cut(s) 477
EcoT14I CCWWGG 1 cut(s) 570
EcoT38I GRGCYC 3 cut(s) 98, 188, 486
ErhI CCWWGG 1 cut(s) 570
FaeI CATG 3 cut(s) 183, 358, 604
FaiI YATR 3 cut(s) 181, 356, 602
FalI AAGNNNNNCTT 2 cut(s) 563, 595
FatI CATG 3 cut(s) 179, 354, 600
FauI CCCGC 1 cut(s) 250
FblI GTMKAC 1 cut(s) 576
Fnu4HI GCNGC 6 cut(s) 297, 300, 445, 463, 545, 567
FriOI GRGCYC 3 cut(s) 98, 188, 486
Fsp4HI GCNGC 6 cut(s) 297, 300, 445, 463, 545, 567
FspBI CTAG 1 cut(s) 71
GlaI GCGC 3 cut(s) 311, 466, 543
GluI GCNGC 6 cut(s) 297, 300, 445, 463, 545, 567
GsuI CTGGAG 2 cut(s) 193, 299
HaeIII GGCC 2 cut(s) 408, 473
HapII CCGG 2 cut(s) 288, 387
HgaI GACGC 2 cut(s) 328, 538
HhaI GCGC 3 cut(s) 312, 467, 544
Hin1I GRCGYC 1 cut(s) 393
Hin1II CATG 3 cut(s) 183, 358, 604
Hin6I GCGC 3 cut(s) 310, 465, 542
HinP1I GCGC 3 cut(s) 310, 465, 542
HinfI GANTC 1 cut(s) 38
HpaII CCGG 2 cut(s) 288, 387
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 2 cut(s) 528, 577
Hpy188I TCNGA 4 cut(s) 26, 43, 197, 277
Hpy188III TCNNGA 3 cut(s) 316, 487, 505
Hpy8I GTNNAC 2 cut(s) 528, 577
Hpy99I CGWCG 3 cut(s) 344, 395, 455
HpyAV CCTTC 1 cut(s) 142
HpyCH4IV ACGT 4 cut(s) 393, 440, 450, 522
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
HpyF3I CTNAG 1 cut(s) 580
HpySE526I ACGT 4 cut(s) 393, 440, 450, 522
Hsp92I GRCGYC 1 cut(s) 393
Hsp92II CATG 3 cut(s) 183, 358, 604
HspAI GCGC 3 cut(s) 310, 465, 542
Kzo9I GATC 4 cut(s) 192, 277, 358, 489
LguI GCTCTTC 1 cut(s) 431
LmnI GCTCC 2 cut(s) 183, 489
LpnPI CCDG 8 cut(s) 223, 301, 329, 400, 464, 491, 500, 530
MaeI CTAG 1 cut(s) 71
MaeII ACGT 4 cut(s) 393, 440, 450, 522
MaeIII GTNAC 2 cut(s) 10, 502
MalI GATC 4 cut(s) 194, 279, 360, 491
MboI GATC 4 cut(s) 192, 277, 358, 489
MflI RGATCY 2 cut(s) 192, 358
MhlI GDGCHC 4 cut(s) 98, 188, 486, 590
MluCI AATT 3 cut(s) 27, 33, 332
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 2 cut(s) 220, 585
MspA1I CMGCKG 1 cut(s) 213
MspI CCGG 2 cut(s) 288, 387
MspR9I CCNGG 2 cut(s) 387, 479
MvaI CCWGG 1 cut(s) 479
MvnI CGCG 5 cut(s) 310, 462, 467, 542, 544
MwoI GCNNNNNNNGC 1 cut(s) 183
NciI CCSGG 1 cut(s) 387
NdeII GATC 4 cut(s) 192, 277, 358, 489
NlaIII CATG 3 cut(s) 183, 358, 604
NlaIV GGNNCC 3 cut(s) 185, 238, 485
NmeAIII GCCGAG 1 cut(s) 523
NmuCI GTSAC 2 cut(s) 10, 502
PciSI GCTCTTC 1 cut(s) 431
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PkrI GCNGC 6 cut(s) 298, 301, 446, 464, 546, 568
PleI GAGTC 1 cut(s) 46
PmaCI CACGTG 1 cut(s) 441
PmlI CACGTG 1 cut(s) 441
PpsI GAGTC 1 cut(s) 46
Ppu21I YACGTR 1 cut(s) 441
Psp6I CCWGG 1 cut(s) 477
PspCI CACGTG 1 cut(s) 441
PspGI CCWGG 1 cut(s) 477
PspN4I GGNNCC 3 cut(s) 185, 238, 485
PsuI RGATCY 2 cut(s) 192, 358
PvuII CAGCTG 1 cut(s) 213
SapI GCTCTTC 1 cut(s) 431
SatI GCNGC 6 cut(s) 297, 300, 445, 463, 545, 567
Sau3AI GATC 4 cut(s) 192, 277, 358, 489
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 2 cut(s) 387, 479
SduI GDGCHC 4 cut(s) 98, 188, 486, 590
Sse9I AATT 3 cut(s) 27, 33, 332
SsiI CCGC 9 cut(s) 175, 243, 297, 300, 445, 462, 544, 547, 567
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 2 cut(s) 385, 477
StyI CCWWGG 1 cut(s) 570
TaiI ACGT 4 cut(s) 396, 443, 453, 525
TaqI TCGA 1 cut(s) 330
TasI AATT 3 cut(s) 27, 33, 332
TauI GCSGC 6 cut(s) 299, 302, 447, 465, 547, 569
TseFI GTSAC 2 cut(s) 10, 502
Tsp45I GTSAC 2 cut(s) 10, 502
TspDTI ATGAA 3 cut(s) 17, 154, 391
TspGWI ACGGA 1 cut(s) 313
XagI CCTNNNNNAGG 1 cut(s) 497
XapI RAATTY 2 cut(s) 27, 332
XmiI GTMKAC 1 cut(s) 576
XspI CTAG 1 cut(s) 71
ZraI GACGTC 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.