Rh2DG683900

TRAM, LAG1 and CLN8 homology domains.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004398
Physical Location & Seq
Reverse (-)
90292300 .. 90293970
1671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG683900.1

Sequence Viewer

Length: 681 bp
ATGAATGAGTTCAAACAGAGTCAAGAGACTCTTCTTGTTCTTGTTCTTGTTCATCTAGGCTGCCTCATCTCCCTCGCCCACGGCACCCCCGCCGTCTTCTTCTCCTCCTTCGCCATTCTCTCCGATCCCTCCACCGGCTTCGCCGCCCCCAACACGCGCCTCCAGAACTCCGTCCTCGATTTCAGCGTCGCCTATTTCCTCACGGATCTTCTCCACTACCTCCTCTTCTTCCCCGGCGACGTCCTCTTCATCGGCCACCACCTCGCCACGCTCTTCGTCTTCCTCACCTGCCGCTACGTCGCCTCCCGCGGCGCCTTCGCCGTCCTCACGCTCCTCATCCTCGCCGAGGTCACCAGCCTCTGCCAGAACGTCTGGACGCTAGCCAACGCGCGCCGGAAGGACGTGGAGTTCGCCGCCAAGGTGTACGATTTTCTGTCTCCTCCGTTTTATGTTCTCTATTCGATTGTGAGGGGCTTTGTTGGCCCTTGTTTCGTGTATAGGATGTGTGCTTTCTACGCTAGCGGCGCCGCCGAGGGCTTGATTCCCCGGTGGGTTTGGGTTTCGTGGATTGTGGTGGTAATGTCTGCTATTTCTGTTAGCATTATGTGGATTTCGAATCTTTGGGTGGAGTTGTATAGAGATAGGAGTGGCAAGTTGGAAAAGAAAGTTTTCAGGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF573 TRAM_LAG1_CLN8

Protein Analysis

226

Amino Acids

25.5

Weight (kDa)

8.61

Isoelectric Point (pI)

31.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAM_LAG1_CLN8 PF03798 22 - 208 2.8e-18 TLC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 296
AatII GACGTC 1 cut(s) 243
Acc36I ACCTGC 1 cut(s) 296
AccB1I GGYRCC 3 cut(s) 83, 311, 524
AccII CGCG 4 cut(s) 157, 309, 389, 391
AciI CCGC 8 cut(s) 90, 144, 292, 307, 309, 414, 522, 528
AclWI GGATC 2 cut(s) 119, 213
AcoI YGGCCR 1 cut(s) 253
AcyI GRCGYC 3 cut(s) 240, 312, 525
AfaI GTAC 1 cut(s) 425
AfiI CCNNNNNNNGG 2 cut(s) 134, 346
AgsI TTSAA 1 cut(s) 13
AjiI CACGTC 1 cut(s) 403
AloI GAACNNNNNNTCC 2 cut(s) 392, 424
Alw26I GTCTC 2 cut(s) 20, 441
AlwI GGATC 2 cut(s) 119, 213
AlwNI CAGNNNCTG 1 cut(s) 360
AoxI GGCC 2 cut(s) 253, 481
ApeKI GCWGC 1 cut(s) 60
ArsI GACNNNNNNTTYG 2 cut(s) 392, 424
Asp700I GAANNNNTTC 2 cut(s) 8, 668
AspLEI GCGC 5 cut(s) 159, 314, 391, 393, 527
AspS9I GGNCC 1 cut(s) 482
AsuC2I CCSGG 2 cut(s) 234, 547
AsuHPI GGTGA 2 cut(s) 277, 343
AsuII TTCGAA 1 cut(s) 614
AsuNHI GCTAGC 2 cut(s) 379, 518
BanI GGYRCC 3 cut(s) 83, 311, 524
BbsI GAAGAC 2 cut(s) 88, 271
BbvI GCAGC 1 cut(s) 47
BceAI ACGGC 3 cut(s) 77, 97, 305
BcnI CCSGG 2 cut(s) 234, 547
BcoDI GTCTC 2 cut(s) 20, 441
BfaI CTAG 3 cut(s) 56, 380, 519
BfoI RGCGCY 2 cut(s) 315, 528
BfuAI ACCTGC 1 cut(s) 296
BisI GCNGC 7 cut(s) 61, 144, 292, 310, 414, 523, 528
BlsI GCNGC 7 cut(s) 62, 145, 293, 311, 415, 524, 529
Bme1390I CCNGG 2 cut(s) 234, 547
BmgBI CACGTC 1 cut(s) 403
BmgT120I GGNCC 1 cut(s) 482
BmiI GGNNCC 3 cut(s) 85, 313, 526
BmrFI CCNGG 2 cut(s) 234, 547
BmtI GCTAGC 2 cut(s) 383, 522
BpiI GAAGAC 2 cut(s) 88, 271
BpmI CTGGAG 1 cut(s) 146
Bpu14I TTCGAA 1 cut(s) 614
BpuMI CCSGG 2 cut(s) 234, 547
BsaHI GRCGYC 3 cut(s) 240, 312, 525
BsaJI CCNNGG 7 cut(s) 79, 232, 307, 345, 417, 531, 545
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 346
Bse118I RCCGGY 1 cut(s) 134
BseDI CCNNGG 7 cut(s) 79, 232, 307, 345, 417, 531, 545
BseGI GGATG 2 cut(s) 336, 507
BseLI CCNNNNNNNGG 2 cut(s) 134, 346
BsePI GCGCGC 1 cut(s) 389
BseRI GAGGAG 4 cut(s) 94, 212, 323, 429
BseXI GCAGC 1 cut(s) 47
Bsh1236I CGCG 4 cut(s) 157, 309, 389, 391
BshFI GGCC 2 cut(s) 255, 483
BshNI GGYRCC 3 cut(s) 83, 311, 524
BsiSI CCGG 4 cut(s) 135, 234, 394, 547
BslI CCNNNNNNNGG 2 cut(s) 134, 346
BsmAI GTCTC 2 cut(s) 20, 441
BsnI GGCC 2 cut(s) 255, 483
Bsp119I TTCGAA 1 cut(s) 614
Bsp143I GATC 2 cut(s) 124, 205
BspACI CCGC 8 cut(s) 90, 144, 292, 307, 309, 414, 522, 528
BspANI GGCC 2 cut(s) 255, 483
BspFNI CGCG 4 cut(s) 157, 309, 389, 391
BspLI GGNNCC 3 cut(s) 85, 313, 526
BspMI ACCTGC 1 cut(s) 296
BspOI GCTAGC 2 cut(s) 383, 522
BspPI GGATC 2 cut(s) 119, 213
BspQI GCTCTTC 1 cut(s) 278
BspT104I TTCGAA 1 cut(s) 614
BspT107I GGYRCC 3 cut(s) 83, 311, 524
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 7 cut(s) 79, 232, 307, 345, 417, 531, 545
BssHII GCGCGC 1 cut(s) 389
BssMI GATC 2 cut(s) 124, 205
BssNI GRCGYC 3 cut(s) 240, 312, 525
BssT1I CCWWGG 1 cut(s) 417
Bst6I CTCTTC 4 cut(s) 36, 230, 251, 278
BstACI GRCGYC 3 cut(s) 240, 312, 525
BstBI TTCGAA 1 cut(s) 614
BstC8I GCNNGC 3 cut(s) 381, 391, 520
BstDSI CCRYGG 2 cut(s) 79, 307
BstEII GGTNACC 1 cut(s) 349
BstENI CCTNNNNNAGG 1 cut(s) 344
BstF5I GGATG 2 cut(s) 336, 507
BstFNI CGCG 4 cut(s) 157, 309, 389, 391
BstH2I RGCGCY 2 cut(s) 315, 528
BstHHI GCGC 5 cut(s) 159, 314, 391, 393, 527
BstKTI GATC 2 cut(s) 127, 208
BstMAI GTCTC 2 cut(s) 20, 441
BstMBI GATC 2 cut(s) 124, 205
BstMWI GCNNNNNNNGC 3 cut(s) 480, 515, 524
BstPI GGTNACC 1 cut(s) 349
BstSCI CCNGG 2 cut(s) 232, 545
BstUI CGCG 4 cut(s) 157, 309, 389, 391
BstV1I GCAGC 1 cut(s) 47
BstV2I GAAGAC 2 cut(s) 88, 271
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 2 cut(s) 255, 483
BtgI CCRYGG 2 cut(s) 79, 307
BtrI CACGTC 1 cut(s) 403
BtsCI GGATG 2 cut(s) 336, 507
BveI ACCTGC 1 cut(s) 296
Cac8I GCNNGC 3 cut(s) 381, 391, 520
CaiI CAGNNNCTG 1 cut(s) 360
CfoI GCGC 5 cut(s) 159, 314, 391, 393, 527
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 482
Cfr42I CCGCGG 1 cut(s) 310
CseI GACGC 2 cut(s) 175, 385
Csp6I GTAC 1 cut(s) 424
CviJI RGCY 8 cut(s) 60, 138, 255, 357, 383, 474, 483, 537
CviKI_1 RGCY 8 cut(s) 60, 138, 255, 357, 383, 474, 483, 537
CviQI GTAC 1 cut(s) 424
DinI GGCGCC 2 cut(s) 313, 526
DpnI GATC 2 cut(s) 126, 207
DpnII GATC 2 cut(s) 124, 205
EaeI YGGCCR 1 cut(s) 253
Eam1104I CTCTTC 4 cut(s) 36, 230, 251, 278
EarI CTCTTC 4 cut(s) 36, 230, 251, 278
Eco130I CCWWGG 1 cut(s) 417
Eco91I GGTNACC 1 cut(s) 349
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoO65I GGTNACC 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 417
EgeI GGCGCC 2 cut(s) 313, 526
EheI GGCGCC 2 cut(s) 313, 526
ErhI CCWWGG 1 cut(s) 417
FaiI YATR 4 cut(s) 450, 498, 605, 636
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FauI CCCGC 2 cut(s) 97, 314
Fnu4HI GCNGC 7 cut(s) 61, 144, 292, 310, 414, 523, 528
FokI GGATG 2 cut(s) 323, 514
Fsp4HI GCNGC 7 cut(s) 61, 144, 292, 310, 414, 523, 528
FspBI CTAG 3 cut(s) 56, 380, 519
GlaI GCGC 5 cut(s) 158, 313, 390, 392, 526
GluI GCNGC 7 cut(s) 61, 144, 292, 310, 414, 523, 528
GsuI CTGGAG 1 cut(s) 146
HaeII RGCGCY 2 cut(s) 315, 528
HaeIII GGCC 2 cut(s) 255, 483
HapII CCGG 4 cut(s) 135, 234, 394, 547
HgaI GACGC 2 cut(s) 175, 385
HhaI GCGC 5 cut(s) 159, 314, 391, 393, 527
Hin1I GRCGYC 3 cut(s) 240, 312, 525
Hin6I GCGC 5 cut(s) 157, 312, 389, 391, 525
HinP1I GCGC 5 cut(s) 157, 312, 389, 391, 525
HinfI GANTC 4 cut(s) 19, 28, 541, 616
HpaII CCGG 4 cut(s) 135, 234, 394, 547
HphI GGTGA 2 cut(s) 277, 343
Hpy166II GTNNAC 1 cut(s) 424
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 3 cut(s) 23, 163, 373
Hpy8I GTNNAC 1 cut(s) 424
Hpy99I CGWCG 3 cut(s) 191, 242, 302
HpyAV CCTTC 3 cut(s) 118, 325, 391
HpyCH4IV ACGT 4 cut(s) 240, 297, 369, 402
HpyF10VI GCNNNNNNNGC 3 cut(s) 480, 515, 524
HpySE526I ACGT 4 cut(s) 240, 297, 369, 402
Hsp92I GRCGYC 3 cut(s) 240, 312, 525
HspAI GCGC 5 cut(s) 157, 312, 389, 391, 525
KasI GGCGCC 2 cut(s) 311, 524
KspI CCGCGG 1 cut(s) 310
Kzo9I GATC 2 cut(s) 124, 205
LguI GCTCTTC 1 cut(s) 278
LmnI GCTCC 1 cut(s) 336
Lsp1109I GCAGC 1 cut(s) 47
MaeI CTAG 3 cut(s) 56, 380, 519
MaeII ACGT 4 cut(s) 240, 297, 369, 402
MaeIII GTNAC 1 cut(s) 349
MalI GATC 2 cut(s) 126, 207
MboI GATC 2 cut(s) 124, 205
MboII GAAGA 9 cut(s) 23, 88, 91, 200, 217, 220, 238, 265, 271
MflI RGATCY 1 cut(s) 205
Mly113I GGCGCC 2 cut(s) 312, 525
MlyI GAGTC 2 cut(s) 22, 28
MmeI TCCRAC 1 cut(s) 636
MroXI GAANNNNTTC 2 cut(s) 8, 668
MspA1I CMGCKG 1 cut(s) 309
MspI CCGG 4 cut(s) 135, 234, 394, 547
MspR9I CCNGG 2 cut(s) 234, 547
MvnI CGCG 4 cut(s) 157, 309, 389, 391
MwoI GCNNNNNNNGC 3 cut(s) 480, 515, 524
NarI GGCGCC 2 cut(s) 312, 525
NciI CCSGG 2 cut(s) 234, 547
NdeII GATC 2 cut(s) 124, 205
NheI GCTAGC 2 cut(s) 379, 518
NlaIV GGNNCC 3 cut(s) 85, 313, 526
NmeAIII GCCGAG 2 cut(s) 370, 556
NmuCI GTSAC 1 cut(s) 349
NspV TTCGAA 1 cut(s) 614
PaqCI CACCTGC 1 cut(s) 296
PauI GCGCGC 1 cut(s) 389
PciSI GCTCTTC 1 cut(s) 278
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PdmI GAANNNNTTC 2 cut(s) 8, 668
PfeI GAWTC 2 cut(s) 541, 616
PkrI GCNGC 7 cut(s) 62, 145, 293, 311, 415, 524, 529
PleI GAGTC 2 cut(s) 22, 27
PluTI GGCGCC 2 cut(s) 315, 528
PpsI GAGTC 2 cut(s) 22, 27
PspEI GGTNACC 1 cut(s) 349
PspN4I GGNNCC 3 cut(s) 85, 313, 526
PspPI GGNCC 1 cut(s) 482
PstNI CAGNNNCTG 1 cut(s) 360
PsuI RGATCY 1 cut(s) 205
PteI GCGCGC 1 cut(s) 389
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
SacII CCGCGG 1 cut(s) 310
SapI GCTCTTC 1 cut(s) 278
SatI GCNGC 7 cut(s) 61, 144, 292, 310, 414, 523, 528
Sau3AI GATC 2 cut(s) 124, 205
Sau96I GGNCC 1 cut(s) 482
SchI GAGTC 2 cut(s) 22, 28
ScrFI CCNGG 2 cut(s) 234, 547
SetI ASST 9 cut(s) 222, 243, 264, 290, 300, 351, 372, 405, 423
SfoI GGCGCC 2 cut(s) 313, 526
Sfr303I CCGCGG 1 cut(s) 310
SfuI TTCGAA 1 cut(s) 614
SgrBI CCGCGG 1 cut(s) 310
SsiI CCGC 8 cut(s) 90, 144, 292, 307, 309, 414, 522, 528
SspDI GGCGCC 2 cut(s) 311, 524
SspMI CTAG 3 cut(s) 56, 380, 519
StyD4I CCNGG 2 cut(s) 232, 545
StyI CCWWGG 1 cut(s) 417
TaiI ACGT 4 cut(s) 243, 300, 372, 405
TaqI TCGA 3 cut(s) 177, 461, 614
TauI GCSGC 6 cut(s) 146, 294, 312, 416, 525, 530
TfiI GAWTC 2 cut(s) 541, 616
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 1 cut(s) 60
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 3 cut(s) 17, 41, 238
TspGWI ACGGA 3 cut(s) 160, 218, 432
XagI CCTNNNNNAGG 1 cut(s) 344
XmnI GAANNNNTTC 2 cut(s) 8, 668
XspI CTAG 3 cut(s) 56, 380, 519
ZraI GACGTC 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.